organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2414-3146

Ethidium hepta­fluoro­butyrate

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aDepartment of Applied Chemistry, Faculty of Science Division I, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan
*Correspondence e-mail: sadakiyo@rs.tus.ac.jp

Edited by D.-J. Xu, Zhejiang University (Yuquan Campus), China (Received 31 August 2022; accepted 4 September 2022; online 8 September 2022)

In the title compound (systematic name: 3,8-diamino-5-ethyl-6-phenylphenanthridin-5-ium 2,2,3,3,4,4,4-heptafluorobutyrate), C21H20N3+·C4F7O2, two ethidium ions, C21H20N3+ form a dimerized structure due to ππ inter­actions, even though they are positively charged. The hepta­fluoro­butyrate anions are connected to neighbouring cation dimers via hydrogen-bonding inter­actions, the hydrogen-bonding donor sites of the –NH2 groups of the ethidium ions connecting to the hydrogen-bonding acceptor sites of the –COO groups of the hepta­fluoro­butyrate anions.

3D view (loading...)
[Scheme 3D1]
Chemical scheme
[Scheme 1]

Structure description

Ethidium salts are widely used in scientific research as a result of their important applications, including as inter­calators for DNA (Chen et al., 2000[Chen, W., Turro, N. J. & Tomalia, D. A. (2000). Langmuir, 16, 15-19.]) and as building units for covalent organic frameworks (Ma et al., 2016[Ma, H., Liu, B., Li, B., Zhang, L., Li, Y.-G., Tan, H.-Q., Zang, H.-Y. & Zhu, G. (2016). J. Am. Chem. Soc. 138, 5897-5903.]). In this study, the structure of an ethidium salt with a hepta­fluoro­butyrate anion is reported (Fig. 1[link]). Two ethidium cations form a dimerized structure (Fig. 2[link]) via ππ stacking and four dimeric pairs are located in the unit cell. There are two ethidium cations and two hepta­fluoro­butyrate anions as the crystallographically independent components. The ethidium cations do not exhibit a completely planar structure but instead show a slightly bent shape (C19⋯C11⋯C24 = 170.82°, C12⋯C3⋯C25 = 165.57°). The closest CgCg separation between the ethid­ium cations is 3.7502 (3) Å, indicating the presence of a ππ inter­action. Some hydrogen bonds with relatively short distances are observed between the ethidium cation and hepta­fluoro­butyrate anion (e.g., N3—H3A⋯O1 = 2.899 Å, N3—H3⋯O4 = 2.909 Å, N5—H5A⋯O4 = 2.935 Å, N4—H4A⋯O2 = 2.990 Å, N6—H6A⋯O3 = 2.939 Å; Table 1[link]), which would be related to the formation of this packing structure (Fig. 3[link]).

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3⋯O4i 0.88 2.04 2.909 (4) 171
N3—H3A⋯O1ii 0.88 2.06 2.899 (3) 159
N4—H4⋯O3iii 0.88 2.26 3.088 (4) 158
N4—H4A⋯O2 0.88 2.13 2.991 (3) 166
C15—H15⋯O1iii 0.95 2.62 3.353 (4) 135
N5—H5A⋯O4iv 0.88 2.16 2.934 (3) 146
N5—H5B⋯O1iii 0.88 2.30 3.076 (3) 147
N5—H5B⋯F3iii 0.88 2.54 3.208 (3) 133
C26—H26⋯F1 0.95 2.61 3.184 (3) 119
N6—H6A⋯O3v 0.88 2.16 2.938 (3) 147
N6—H6B⋯O2i 0.88 2.56 3.184 (4) 129
N6—H6B⋯F12i 0.88 2.34 3.097 (4) 144
C33—H33A⋯N3vi 0.99 2.59 3.223 (4) 122
Symmetry codes: (i) [x-{\script{1\over 2}}, -y+{\script{1\over 2}}, z-{\script{1\over 2}}]; (ii) [-x+2, -y, -z+1]; (iii) [-x+{\script{3\over 2}}, y+{\script{1\over 2}}, -z+{\script{3\over 2}}]; (iv) [x-1, y, z]; (v) [-x+1, -y, -z+1]; (vi) [x-{\script{1\over 2}}, -y+{\script{1\over 2}}, z+{\script{1\over 2}}].
[Figure 1]
Figure 1
The crystal structure and hydrogen-bonding arrangements of the title compound with displacement ellipsoids drawn at the 50% probability level. Hydrogen atoms are omitted for clarity.
[Figure 2]
Figure 2
The dimerized structure of the ethidium cations.
[Figure 3]
Figure 3
Illustration of the packing of the title compound along the a axis.

Synthesis and crystallization

A methanol solution (1 ml) of silver(I) hepta­fluoro­butyrate (64.2 mg, 0.20 mmol) was mixed with a methanol solution (30 ml) of ethidium bromide (78.9 mg, 0.20 mmol) and then the mixture was stirred for 30 minutes at room temperature. The insoluble precipitate was removed by centrifugation. The remaining solution was evaporated to obtain a crude powder. The crude powder was dissolved in a mixed solvent (methanol:water = 1:1) and red crystals of the target compound were obtained by slow evaporation of the solution after 9 d at room temperature.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link].

Table 2
Experimental details

Crystal data
Chemical formula C21H20N3+·C4F7O2
Mr 527.44
Crystal system, space group Monoclinic, P21/n
Temperature (K) 100
a, b, c (Å) 12.1592 (8), 18.9260 (14), 20.3097 (17)
β (°) 91.474 (3)
V3) 4672.2 (6)
Z 8
Radiation type Mo Kα
μ (mm−1) 0.13
Crystal size (mm) 0.25 × 0.20 × 0.15
 
Data collection
Diffractometer Bruker PHOTON II CPAD
Absorption correction Multi-scan (SADABS; Krause et al., 2015[Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3-10.])
Tmin, Tmax 0.605, 0.711
No. of measured, independent and observed [I > 2σ(I)] reflections 58553, 12404, 9416
Rint 0.109
(sin θ/λ)max−1) 0.717
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.089, 0.218, 1.11
No. of reflections 12404
No. of parameters 669
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.47, −0.45
Computer programs: APEX4 and SAINT (Bruker, 2021[Bruker (2021). APEX4 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]), SIR2019 (Burla et al., 2015[Burla, M. C., Caliandro, R., Carrozzini, B., Cascarano, G. L., Cuocci, C., Giacovazzo, C., Mallamo, M., Mazzone, A. & Polidori, G. (2015). J. Appl. Cryst. 48, 306-309.]), SHELXL2018/3 (Sheldrick, 2015[Sheldrick, G. M. (2015). Acta Cryst. C71, 3-8.]), DIAMOND (Brandenburg, 2014[Brandenburg, K. (2014). DIAMOND, Crystal Impact GbR, Bonn, Germany.]) and Yadokari-XG (Kabuto et al., 2009[Kabuto, C., Akine, S., Nemoto, T. & Kwon, E. (2009). J. Crystallogr. Soc. Japan, 51, 218-224.]).

Structural data


Computing details top

Data collection: APEX4 (Bruler, 2021); cell refinement: SAINT (Bruler, 2021); data reduction: SAINT (Bruler, 2021); program(s) used to solve structure: SIR2019 (Burla 2015); program(s) used to refine structure: SHELXL2018/3 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: Yadokari-XG (Kabuto, 2009).

3,8-Diamino-5-ethyl-6-phenylphenanthridin-5-ium 2,2,3,3,4,4,4-heptafluorobutyrate top
Crystal data top
C21H20N3+·C4F7O2F(000) = 2160
Mr = 527.44Dx = 1.500 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71069 Å
a = 12.1592 (8) ÅCell parameters from 7105 reflections
b = 18.9260 (14) Åθ = 2.2–27.2°
c = 20.3097 (17) ŵ = 0.13 mm1
β = 91.474 (3)°T = 100 K
V = 4672.2 (6) Å3Block, red
Z = 80.25 × 0.20 × 0.15 mm
Data collection top
Bruker PHOTON II CPAD
diffractometer
9416 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.109
φ and ω scansθmax = 30.6°, θmin = 1.9°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 1617
Tmin = 0.605, Tmax = 0.711k = 2525
58553 measured reflectionsl = 2726
12404 independent reflections
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.089H-atom parameters constrained
wR(F2) = 0.218 w = 1/[σ2(Fo2) + (0.0532P)2 + 9.0949P]
where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
12404 reflectionsΔρmax = 0.47 e Å3
669 parametersΔρmin = 0.45 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

All of hydrogen atoms are geometrically fixed using a riding-model approximation with C–H = 0.95 (for phenyl), 0.98 (for methyl), 0.99 (for methylene), and N–H = 0.88 Å.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
F11.10423 (16)0.34876 (11)0.57616 (10)0.0348 (5)
O10.81718 (17)0.14092 (12)0.72561 (11)0.0272 (5)
F20.69849 (17)0.00943 (11)0.65047 (11)0.0416 (5)
N10.64572 (19)0.32175 (13)0.36249 (12)0.0194 (5)
N20.60689 (19)0.18575 (12)0.61439 (12)0.0190 (5)
F30.96344 (17)0.02675 (11)0.71179 (12)0.0432 (6)
F41.27314 (17)0.37587 (12)0.55497 (10)0.0396 (5)
F50.91654 (18)0.09184 (11)0.59264 (11)0.0419 (5)
F61.25336 (18)0.50412 (11)0.60348 (12)0.0447 (6)
F70.8910 (2)0.07025 (11)0.67357 (12)0.0483 (6)
C10.6334 (2)0.35297 (14)0.47691 (14)0.0179 (5)
F80.7581 (2)0.00011 (11)0.75221 (11)0.0463 (6)
N30.9615 (2)0.19489 (14)0.28830 (13)0.0263 (5)
H30.9237440.1810660.2530590.032*
H3A1.0293770.1799930.2951140.032*
O21.15659 (18)0.33758 (13)0.70389 (12)0.0324 (5)
F91.12268 (19)0.47801 (13)0.53262 (11)0.0480 (6)
O30.66684 (18)0.12731 (13)0.66078 (13)0.0346 (5)
C20.5845 (2)0.34299 (14)0.41299 (14)0.0179 (5)
F100.8540 (2)0.00707 (14)0.55507 (12)0.0572 (7)
F110.98781 (18)0.45093 (13)0.64091 (14)0.0536 (6)
C30.7493 (2)0.34630 (14)0.48463 (14)0.0169 (5)
C40.8107 (2)0.31722 (14)0.43182 (14)0.0176 (5)
C50.7883 (2)0.13477 (14)0.44688 (15)0.0203 (6)
H50.8662880.1375700.4471400.024*
N40.9273 (2)0.28652 (14)0.72447 (13)0.0272 (6)
H40.8873910.3011830.7573330.033*
H4A0.9979670.2963860.7239280.033*
C60.5683 (2)0.37085 (14)0.53133 (14)0.0183 (5)
H60.4906320.3741110.5256470.022*
C70.7207 (2)0.19843 (14)0.61789 (14)0.0185 (5)
C80.7560 (2)0.30125 (14)0.37144 (14)0.0179 (5)
C90.5560 (2)0.16008 (14)0.56038 (14)0.0189 (5)
C100.6156 (2)0.14439 (14)0.50267 (14)0.0188 (5)
C110.7837 (2)0.17952 (14)0.56289 (14)0.0181 (5)
C120.6164 (2)0.38361 (14)0.59262 (14)0.0192 (5)
C130.5596 (2)0.12177 (15)0.44471 (14)0.0208 (6)
H130.4820340.1159380.4445440.025*
C140.7315 (2)0.15223 (14)0.50495 (14)0.0178 (5)
C150.7690 (2)0.23179 (15)0.67315 (14)0.0207 (6)
H150.7253650.2429140.7098830.025*
F121.1169 (2)0.49419 (13)0.70211 (12)0.0530 (6)
C160.4646 (2)0.35300 (15)0.40168 (14)0.0194 (5)
C170.8079 (2)0.26311 (15)0.32207 (14)0.0207 (6)
H170.7698950.2535500.2815870.025*
C180.8990 (2)0.19243 (15)0.56844 (15)0.0208 (6)
H180.9446620.1776690.5337800.025*
C190.8796 (2)0.24854 (15)0.67443 (15)0.0215 (6)
C200.9232 (2)0.29873 (15)0.43770 (14)0.0200 (5)
H200.9644770.3129170.4757810.024*
N50.5568 (2)0.39977 (14)0.64670 (12)0.0252 (5)
H5A0.4845880.4024200.6433710.030*
H5B0.5905420.4075350.6848570.030*
C210.7971 (2)0.36382 (15)0.54669 (14)0.0192 (5)
H210.8748860.3630640.5524010.023*
C220.7334 (2)0.38185 (15)0.59871 (14)0.0202 (6)
H220.7680090.3934370.6397740.024*
F131.0447 (2)0.55673 (12)0.62469 (15)0.0620 (8)
C230.7332 (2)0.11406 (15)0.39074 (15)0.0226 (6)
H230.7737300.1034580.3526140.027*
C240.6170 (2)0.10799 (15)0.38796 (14)0.0212 (6)
C250.9149 (2)0.23925 (15)0.33223 (14)0.0205 (6)
C260.9456 (2)0.22516 (15)0.62169 (15)0.0223 (6)
H261.0229060.2325390.6238170.027*
N60.5651 (2)0.08560 (15)0.33075 (13)0.0296 (6)
H6A0.4932930.0796120.3293790.035*
H6B0.6036440.0772630.2955030.035*
C270.9738 (2)0.26090 (16)0.38982 (15)0.0218 (6)
H271.0494000.2489870.3952200.026*
C280.4343 (2)0.14853 (15)0.56064 (14)0.0205 (6)
O41.3299 (2)0.36498 (19)0.68042 (15)0.0545 (9)
C291.2309 (2)0.35991 (17)0.66902 (16)0.0260 (6)
C300.4161 (2)0.41967 (16)0.40651 (15)0.0239 (6)
H300.4601040.4600490.4159840.029*
C310.3991 (2)0.29412 (16)0.38733 (15)0.0230 (6)
H310.4318730.2487510.3839220.028*
C320.3920 (3)0.08359 (16)0.57879 (18)0.0290 (7)
H320.4400690.0460240.5911240.035*
C330.5421 (2)0.19980 (16)0.67456 (14)0.0223 (6)
H330.4634240.2052090.6619020.027*
H33A0.5674720.2445670.6951050.027*
C340.2383 (2)0.36769 (18)0.38333 (16)0.0278 (7)
H340.1609980.3727940.3773530.033*
C350.7493 (2)0.10657 (17)0.69107 (15)0.0244 (6)
C360.2866 (2)0.30157 (17)0.37806 (16)0.0266 (6)
H360.2423730.2614020.3680750.032*
C370.6013 (2)0.32601 (18)0.29317 (15)0.0259 (6)
H370.5204770.3324420.2935460.031*
H37A0.6167770.2812700.2699240.031*
C380.8860 (3)0.00120 (17)0.66979 (17)0.0303 (7)
C390.3034 (3)0.42642 (17)0.39738 (16)0.0284 (7)
H390.2701320.4716660.4007460.034*
C400.2508 (3)0.19222 (18)0.54011 (17)0.0299 (7)
H400.2023390.2291240.5266100.036*
C411.1930 (2)0.38599 (17)0.59907 (16)0.0262 (6)
C420.5551 (3)0.14010 (18)0.72407 (16)0.0303 (7)
H420.5257770.0963310.7047270.046*
H42A0.5146290.1516540.7637720.046*
H42B0.6331970.1337860.7356640.046*
C431.1618 (3)0.46488 (18)0.59370 (17)0.0303 (7)
C440.3635 (2)0.20300 (16)0.54076 (16)0.0254 (6)
H440.3925320.2473070.5277260.030*
C450.7712 (3)0.02542 (17)0.69042 (16)0.0270 (6)
F141.0221 (2)0.00067 (16)0.59017 (17)0.0744 (9)
C460.2090 (3)0.12757 (19)0.55915 (19)0.0349 (8)
H460.1317480.1201420.5586910.042*
C470.2793 (3)0.07386 (18)0.5788 (2)0.0378 (8)
H470.2499920.0298610.5924850.045*
C480.6529 (3)0.3871 (2)0.25683 (17)0.0380 (8)
H480.6366020.4314700.2794660.057*
H48A0.6228160.3889580.2116410.057*
H48B0.7328010.3803770.2559040.057*
C491.0752 (3)0.49156 (19)0.6410 (2)0.0380 (8)
C500.9189 (3)0.0216 (2)0.6003 (2)0.0398 (9)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
F10.0375 (11)0.0321 (10)0.0343 (11)0.0072 (8)0.0076 (8)0.0019 (8)
O10.0229 (10)0.0265 (11)0.0321 (12)0.0015 (8)0.0014 (9)0.0064 (9)
F20.0363 (11)0.0372 (12)0.0511 (13)0.0142 (9)0.0055 (9)0.0075 (10)
N10.0186 (11)0.0224 (12)0.0172 (12)0.0015 (9)0.0004 (9)0.0017 (9)
N20.0182 (11)0.0184 (11)0.0208 (12)0.0014 (9)0.0052 (9)0.0012 (9)
F30.0340 (11)0.0366 (12)0.0578 (14)0.0118 (9)0.0205 (10)0.0162 (10)
F40.0418 (11)0.0466 (12)0.0312 (11)0.0077 (9)0.0151 (9)0.0037 (9)
F50.0514 (13)0.0348 (11)0.0401 (12)0.0074 (9)0.0159 (10)0.0062 (9)
F60.0427 (12)0.0328 (11)0.0590 (15)0.0151 (9)0.0084 (10)0.0105 (10)
F70.0676 (15)0.0212 (10)0.0555 (15)0.0098 (10)0.0093 (12)0.0071 (9)
C10.0197 (13)0.0133 (12)0.0207 (14)0.0029 (9)0.0005 (10)0.0000 (10)
F80.0762 (16)0.0325 (11)0.0308 (11)0.0037 (10)0.0115 (10)0.0092 (9)
N30.0231 (12)0.0319 (14)0.0239 (13)0.0063 (10)0.0040 (10)0.0028 (11)
O20.0248 (11)0.0415 (14)0.0310 (12)0.0027 (10)0.0021 (9)0.0082 (10)
F90.0575 (14)0.0498 (14)0.0365 (12)0.0109 (11)0.0017 (10)0.0192 (10)
O30.0241 (11)0.0366 (13)0.0427 (14)0.0017 (9)0.0050 (10)0.0055 (11)
C20.0181 (12)0.0151 (12)0.0204 (14)0.0012 (10)0.0007 (10)0.0008 (10)
F100.0867 (19)0.0517 (15)0.0334 (12)0.0229 (13)0.0070 (12)0.0139 (11)
F110.0338 (11)0.0446 (14)0.0832 (19)0.0017 (10)0.0185 (11)0.0006 (12)
C30.0190 (12)0.0128 (12)0.0189 (13)0.0022 (9)0.0002 (10)0.0020 (10)
C40.0179 (12)0.0145 (12)0.0205 (14)0.0038 (9)0.0004 (10)0.0021 (10)
C50.0194 (13)0.0152 (13)0.0265 (15)0.0003 (10)0.0046 (11)0.0019 (11)
N40.0213 (12)0.0302 (14)0.0297 (14)0.0004 (10)0.0042 (10)0.0048 (11)
C60.0169 (12)0.0176 (13)0.0203 (14)0.0014 (10)0.0001 (10)0.0003 (10)
C70.0170 (12)0.0172 (13)0.0212 (14)0.0006 (10)0.0018 (10)0.0036 (10)
C80.0173 (12)0.0178 (13)0.0185 (13)0.0012 (10)0.0014 (10)0.0012 (10)
C90.0190 (13)0.0160 (13)0.0218 (14)0.0017 (10)0.0020 (10)0.0026 (10)
C100.0218 (13)0.0150 (12)0.0196 (14)0.0014 (10)0.0033 (10)0.0028 (10)
C110.0204 (13)0.0150 (12)0.0192 (13)0.0021 (10)0.0040 (10)0.0039 (10)
C120.0217 (13)0.0150 (12)0.0211 (14)0.0017 (10)0.0025 (11)0.0013 (10)
C130.0190 (13)0.0205 (14)0.0229 (14)0.0020 (10)0.0010 (11)0.0026 (11)
C140.0189 (12)0.0145 (12)0.0202 (14)0.0016 (9)0.0046 (10)0.0041 (10)
C150.0215 (13)0.0199 (13)0.0208 (14)0.0033 (10)0.0029 (11)0.0016 (11)
F120.0798 (18)0.0401 (13)0.0397 (13)0.0022 (12)0.0134 (12)0.0063 (10)
C160.0185 (13)0.0216 (14)0.0180 (13)0.0005 (10)0.0001 (10)0.0002 (10)
C170.0202 (13)0.0231 (14)0.0188 (14)0.0022 (11)0.0016 (10)0.0000 (11)
C180.0177 (13)0.0196 (13)0.0254 (15)0.0031 (10)0.0051 (11)0.0037 (11)
C190.0243 (14)0.0172 (13)0.0230 (14)0.0008 (10)0.0021 (11)0.0023 (11)
C200.0167 (12)0.0210 (13)0.0223 (14)0.0028 (10)0.0008 (10)0.0022 (11)
N50.0215 (12)0.0357 (15)0.0184 (12)0.0032 (10)0.0023 (9)0.0032 (10)
C210.0189 (13)0.0186 (13)0.0199 (14)0.0004 (10)0.0029 (10)0.0020 (10)
C220.0227 (13)0.0172 (13)0.0204 (14)0.0020 (10)0.0022 (11)0.0003 (10)
F130.0771 (18)0.0307 (12)0.0795 (19)0.0179 (11)0.0275 (15)0.0170 (12)
C230.0274 (14)0.0182 (13)0.0225 (15)0.0031 (11)0.0100 (11)0.0024 (11)
C240.0254 (14)0.0169 (13)0.0211 (14)0.0037 (10)0.0008 (11)0.0021 (11)
C250.0202 (13)0.0204 (13)0.0212 (14)0.0032 (10)0.0060 (11)0.0017 (11)
C260.0184 (13)0.0193 (14)0.0293 (16)0.0004 (10)0.0024 (11)0.0052 (11)
N60.0261 (13)0.0400 (16)0.0225 (13)0.0026 (11)0.0012 (10)0.0031 (11)
C270.0162 (12)0.0235 (14)0.0259 (15)0.0008 (10)0.0021 (11)0.0051 (11)
C280.0218 (13)0.0202 (13)0.0199 (14)0.0012 (10)0.0047 (11)0.0007 (11)
O40.0221 (12)0.093 (2)0.0479 (17)0.0125 (13)0.0055 (11)0.0342 (16)
C290.0220 (14)0.0268 (15)0.0293 (16)0.0008 (11)0.0006 (12)0.0077 (12)
C300.0271 (15)0.0204 (14)0.0240 (15)0.0000 (11)0.0030 (12)0.0018 (11)
C310.0214 (13)0.0216 (14)0.0259 (15)0.0011 (11)0.0003 (11)0.0020 (11)
C320.0234 (15)0.0194 (14)0.045 (2)0.0017 (11)0.0037 (13)0.0027 (13)
C330.0196 (13)0.0270 (15)0.0207 (14)0.0022 (11)0.0077 (11)0.0030 (11)
C340.0168 (13)0.0363 (17)0.0302 (17)0.0034 (12)0.0005 (12)0.0008 (13)
C350.0202 (14)0.0287 (16)0.0244 (15)0.0024 (11)0.0045 (11)0.0002 (12)
C360.0193 (14)0.0304 (16)0.0300 (16)0.0032 (12)0.0007 (12)0.0028 (13)
C370.0199 (13)0.0395 (18)0.0182 (14)0.0009 (12)0.0030 (11)0.0041 (12)
C380.0333 (17)0.0211 (15)0.0361 (18)0.0038 (12)0.0069 (14)0.0067 (13)
C390.0305 (16)0.0220 (15)0.0324 (17)0.0082 (12)0.0027 (13)0.0024 (12)
C400.0223 (14)0.0293 (16)0.0381 (18)0.0070 (12)0.0024 (13)0.0008 (14)
C410.0236 (14)0.0300 (16)0.0252 (16)0.0015 (12)0.0030 (12)0.0020 (12)
C420.0347 (17)0.0319 (17)0.0249 (16)0.0002 (13)0.0108 (13)0.0008 (13)
C430.0310 (16)0.0307 (17)0.0292 (17)0.0023 (13)0.0011 (13)0.0073 (13)
C440.0230 (14)0.0221 (14)0.0312 (16)0.0007 (11)0.0031 (12)0.0042 (12)
C450.0307 (16)0.0248 (15)0.0254 (16)0.0078 (12)0.0009 (12)0.0005 (12)
F140.0552 (16)0.0700 (19)0.100 (2)0.0157 (14)0.0377 (16)0.0174 (17)
C460.0200 (14)0.0347 (18)0.050 (2)0.0007 (13)0.0045 (14)0.0023 (16)
C470.0261 (16)0.0257 (17)0.062 (2)0.0063 (13)0.0062 (16)0.0044 (16)
C480.0379 (19)0.051 (2)0.0247 (17)0.0022 (16)0.0039 (14)0.0114 (15)
C490.043 (2)0.0252 (17)0.047 (2)0.0019 (14)0.0104 (16)0.0055 (15)
C500.0394 (19)0.036 (2)0.045 (2)0.0013 (15)0.0103 (16)0.0153 (16)
Geometric parameters (Å, º) top
F1—C411.361 (4)C18—C261.358 (4)
O1—C351.252 (4)C18—H180.9500
F2—C451.356 (4)C19—C261.426 (4)
N1—C21.344 (4)C20—C271.367 (4)
N1—C81.403 (3)C20—H200.9500
N1—C371.497 (4)N5—H5A0.8800
N2—C91.337 (4)N5—H5B0.8800
N2—C71.405 (3)C21—C221.369 (4)
N2—C331.494 (3)C21—H210.9500
F3—C381.344 (4)C22—H220.9500
F4—C411.354 (4)F13—C491.328 (4)
F5—C501.338 (4)C23—C241.417 (4)
F6—C431.349 (4)C23—H230.9500
F7—C381.356 (4)C24—N61.375 (4)
C1—C61.417 (4)C25—C271.416 (4)
C1—C31.419 (4)C26—H260.9500
C1—C21.427 (4)N6—H6A0.8800
F8—C451.356 (4)N6—H6B0.8800
N3—C251.359 (4)C27—H270.9500
N3—H30.8800C28—C321.386 (4)
N3—H3A0.8800C28—C441.396 (4)
O2—C291.237 (4)O4—C291.223 (4)
F9—C431.340 (4)C29—C411.562 (4)
O3—C351.227 (4)C30—C391.384 (4)
C2—C161.482 (4)C30—H300.9500
F10—C501.313 (4)C31—C361.383 (4)
F11—C491.312 (4)C31—H310.9500
C3—C211.414 (4)C32—C471.382 (4)
C3—C41.432 (4)C32—H320.9500
C4—C81.413 (4)C33—C421.518 (4)
C4—C201.414 (4)C33—H330.9900
C5—C231.365 (4)C33—H33A0.9900
C5—C141.421 (4)C34—C361.388 (5)
C5—H50.9500C34—C391.389 (5)
N4—C191.362 (4)C34—H340.9500
N4—H40.8800C35—C451.559 (4)
N4—H4A0.8800C36—H360.9500
C6—C121.383 (4)C37—C481.517 (5)
C6—H60.9500C37—H370.9900
C7—C151.403 (4)C37—H37A0.9900
C7—C111.416 (4)C38—C501.526 (5)
C8—C171.399 (4)C38—C451.538 (5)
C9—C101.425 (4)C39—H390.9500
C9—C281.496 (4)C40—C461.384 (5)
C10—C131.411 (4)C40—C441.385 (4)
C10—C141.416 (4)C40—H400.9500
C11—C141.420 (4)C41—C431.544 (5)
C11—C181.424 (4)C42—H420.9800
C12—N51.366 (4)C42—H42A0.9800
C12—C221.425 (4)C42—H42B0.9800
C13—C241.387 (4)C43—C491.529 (5)
C13—H130.9500C44—H440.9500
C15—C191.381 (4)F14—C501.337 (4)
C15—H150.9500C46—C471.380 (5)
F12—C491.330 (5)C46—H460.9500
C16—C311.397 (4)C47—H470.9500
C16—C301.397 (4)C48—H480.9800
C17—C251.387 (4)C48—H48A0.9800
C17—H170.9500C48—H48B0.9800
C2—N1—C8122.0 (2)C32—C28—C44120.1 (3)
C2—N1—C37120.5 (2)C32—C28—C9120.3 (3)
C8—N1—C37117.2 (2)C44—C28—C9119.6 (3)
C9—N2—C7122.5 (2)O4—C29—O2130.4 (3)
C9—N2—C33119.6 (2)O4—C29—C41114.4 (3)
C7—N2—C33117.9 (2)O2—C29—C41115.2 (3)
C6—C1—C3120.5 (3)C39—C30—C16119.5 (3)
C6—C1—C2120.9 (2)C39—C30—H30120.2
C3—C1—C2118.6 (2)C16—C30—H30120.2
C25—N3—H3120.0C36—C31—C16120.3 (3)
C25—N3—H3A120.0C36—C31—H31119.9
H3—N3—H3A120.0C16—C31—H31119.9
N1—C2—C1120.5 (2)C47—C32—C28119.5 (3)
N1—C2—C16118.8 (2)C47—C32—H32120.2
C1—C2—C16120.6 (2)C28—C32—H32120.2
C21—C3—C1117.5 (2)N2—C33—C42111.2 (2)
C21—C3—C4123.2 (2)N2—C33—H33109.4
C1—C3—C4119.1 (2)C42—C33—H33109.4
C8—C4—C20117.0 (3)N2—C33—H33A109.4
C8—C4—C3119.3 (2)C42—C33—H33A109.4
C20—C4—C3123.6 (3)H33—C33—H33A108.0
C23—C5—C14121.4 (3)C36—C34—C39119.9 (3)
C23—C5—H5119.3C36—C34—H34120.1
C14—C5—H5119.3C39—C34—H34120.1
C19—N4—H4120.0O3—C35—O1129.3 (3)
C19—N4—H4A120.0O3—C35—C45116.7 (3)
H4—N4—H4A120.0O1—C35—C45113.9 (3)
C12—C6—C1120.8 (2)C31—C36—C34120.0 (3)
C12—C6—H6119.6C31—C36—H36120.0
C1—C6—H6119.6C34—C36—H36120.0
C15—C7—N2120.6 (2)N1—C37—C48110.8 (3)
C15—C7—C11121.4 (2)N1—C37—H37109.5
N2—C7—C11118.0 (3)C48—C37—H37109.5
C17—C8—N1119.8 (2)N1—C37—H37A109.5
C17—C8—C4121.4 (2)C48—C37—H37A109.5
N1—C8—C4118.7 (2)H37—C37—H37A108.1
N2—C9—C10121.1 (2)F3—C38—F7107.0 (3)
N2—C9—C28119.1 (2)F3—C38—C50107.4 (3)
C10—C9—C28119.7 (3)F7—C38—C50107.0 (3)
C13—C10—C14121.1 (2)F3—C38—C45110.2 (3)
C13—C10—C9120.3 (2)F7—C38—C45108.8 (3)
C14—C10—C9118.5 (3)C50—C38—C45116.0 (3)
C7—C11—C14120.4 (2)C30—C39—C34120.7 (3)
C7—C11—C18116.4 (3)C30—C39—H39119.7
C14—C11—C18123.1 (3)C34—C39—H39119.7
N5—C12—C6122.8 (3)C46—C40—C44119.9 (3)
N5—C12—C22119.0 (3)C46—C40—H40120.1
C6—C12—C22118.2 (3)C44—C40—H40120.1
C24—C13—C10120.5 (3)F4—C41—F1106.2 (3)
C24—C13—H13119.7F4—C41—C43105.7 (3)
C10—C13—H13119.7F1—C41—C43106.5 (2)
C10—C14—C11119.2 (2)F4—C41—C29110.9 (2)
C10—C14—C5116.9 (3)F1—C41—C29111.1 (2)
C11—C14—C5123.8 (2)C43—C41—C29115.9 (3)
C19—C15—C7120.3 (3)C33—C42—H42109.5
C19—C15—H15119.8C33—C42—H42A109.5
C7—C15—H15119.8H42—C42—H42A109.5
C31—C16—C30119.7 (3)C33—C42—H42B109.5
C31—C16—C2119.0 (3)H42—C42—H42B109.5
C30—C16—C2121.3 (3)H42A—C42—H42B109.5
C25—C17—C8120.0 (3)F9—C43—F6107.8 (3)
C25—C17—H17120.0F9—C43—C49106.7 (3)
C8—C17—H17120.0F6—C43—C49107.7 (3)
C26—C18—C11122.1 (3)F9—C43—C41109.0 (3)
C26—C18—H18118.9F6—C43—C41108.7 (3)
C11—C18—H18118.9C49—C43—C41116.6 (3)
N4—C19—C15122.1 (3)C40—C44—C28119.8 (3)
N4—C19—C26119.2 (3)C40—C44—H44120.1
C15—C19—C26118.8 (3)C28—C44—H44120.1
C27—C20—C4121.5 (3)F2—C45—F8107.0 (3)
C27—C20—H20119.3F2—C45—C38105.9 (3)
C4—C20—H20119.3F8—C45—C38106.0 (3)
C12—N5—H5A120.0F2—C45—C35112.1 (3)
C12—N5—H5B120.0F8—C45—C35108.4 (3)
H5A—N5—H5B120.0C38—C45—C35116.9 (2)
C22—C21—C3121.2 (3)C47—C46—C40120.2 (3)
C22—C21—H21119.4C47—C46—H46119.9
C3—C21—H21119.4C40—C46—H46119.9
C21—C22—C12121.5 (3)C46—C47—C32120.5 (3)
C21—C22—H22119.3C46—C47—H47119.7
C12—C22—H22119.3C32—C47—H47119.7
C5—C23—C24121.6 (3)C37—C48—H48109.5
C5—C23—H23119.2C37—C48—H48A109.5
C24—C23—H23119.2H48—C48—H48A109.5
N6—C24—C13122.0 (3)C37—C48—H48B109.5
N6—C24—C23119.6 (3)H48—C48—H48B109.5
C13—C24—C23118.3 (3)H48A—C48—H48B109.5
N3—C25—C17120.6 (3)F11—C49—F13108.8 (3)
N3—C25—C27120.7 (3)F11—C49—F12108.2 (3)
C17—C25—C27118.8 (3)F13—C49—F12107.2 (3)
C18—C26—C19120.5 (3)F11—C49—C43112.1 (3)
C18—C26—H26119.7F13—C49—C43110.1 (3)
C19—C26—H26119.7F12—C49—C43110.3 (3)
C24—N6—H6A120.0F10—C50—F14108.6 (3)
C24—N6—H6B120.0F10—C50—F5108.6 (3)
H6A—N6—H6B120.0F14—C50—F5107.1 (3)
C20—C27—C25120.8 (3)F10—C50—C38112.0 (3)
C20—C27—H27119.6F14—C50—C38109.7 (3)
C25—C27—H27119.6F5—C50—C38110.7 (3)
C8—N1—C2—C17.0 (4)C8—C17—C25—N3171.8 (3)
C37—N1—C2—C1166.9 (3)C8—C17—C25—C277.0 (4)
C8—N1—C2—C16170.5 (2)C11—C18—C26—C190.5 (4)
C37—N1—C2—C1615.6 (4)N4—C19—C26—C18174.4 (3)
C6—C1—C2—N1175.8 (3)C15—C19—C26—C185.7 (4)
C3—C1—C2—N15.7 (4)C4—C20—C27—C250.4 (4)
C6—C1—C2—C161.7 (4)N3—C25—C27—C20172.4 (3)
C3—C1—C2—C16176.8 (2)C17—C25—C27—C206.4 (4)
C6—C1—C3—C215.1 (4)N2—C9—C28—C3291.9 (4)
C2—C1—C3—C21173.4 (2)C10—C9—C28—C3288.8 (4)
C6—C1—C3—C4170.0 (2)N2—C9—C28—C4489.8 (3)
C2—C1—C3—C411.5 (4)C10—C9—C28—C4489.5 (3)
C21—C3—C4—C8180.0 (3)C31—C16—C30—C390.4 (4)
C1—C3—C4—C85.1 (4)C2—C16—C30—C39178.2 (3)
C21—C3—C4—C204.4 (4)C30—C16—C31—C360.1 (4)
C1—C3—C4—C20170.4 (3)C2—C16—C31—C36178.5 (3)
C3—C1—C6—C121.4 (4)C44—C28—C32—C471.8 (5)
C2—C1—C6—C12177.1 (3)C9—C28—C32—C47179.9 (3)
C9—N2—C7—C15173.7 (3)C9—N2—C33—C4299.4 (3)
C33—N2—C7—C158.1 (4)C7—N2—C33—C4278.8 (3)
C9—N2—C7—C113.4 (4)C16—C31—C36—C340.3 (5)
C33—N2—C7—C11174.7 (2)C39—C34—C36—C310.6 (5)
C2—N1—C8—C17163.8 (3)C2—N1—C37—C48105.0 (3)
C37—N1—C8—C1722.1 (4)C8—N1—C37—C4869.2 (3)
C2—N1—C8—C413.5 (4)C16—C30—C39—C340.2 (5)
C37—N1—C8—C4160.6 (3)C36—C34—C39—C300.3 (5)
C20—C4—C8—C175.7 (4)O4—C29—C41—F430.7 (4)
C3—C4—C8—C17170.1 (3)O2—C29—C41—F4149.4 (3)
C20—C4—C8—N1177.0 (2)O4—C29—C41—F1148.5 (3)
C3—C4—C8—N17.1 (4)O2—C29—C41—F131.6 (4)
C7—N2—C9—C100.3 (4)O4—C29—C41—C4389.8 (4)
C33—N2—C9—C10178.4 (2)O2—C29—C41—C4390.2 (4)
C7—N2—C9—C28179.6 (2)F4—C41—C43—F961.8 (3)
C33—N2—C9—C282.3 (4)F1—C41—C43—F950.9 (3)
N2—C9—C10—C13175.8 (3)C29—C41—C43—F9175.0 (2)
C28—C9—C10—C133.5 (4)F4—C41—C43—F655.5 (3)
N2—C9—C10—C144.0 (4)F1—C41—C43—F6168.1 (2)
C28—C9—C10—C14176.7 (2)C29—C41—C43—F667.7 (3)
C15—C7—C11—C14173.7 (3)F4—C41—C43—C49177.4 (3)
N2—C7—C11—C143.4 (4)F1—C41—C43—C4969.9 (4)
C15—C7—C11—C183.5 (4)C29—C41—C43—C4954.2 (4)
N2—C7—C11—C18179.4 (2)C46—C40—C44—C280.0 (5)
C1—C6—C12—N5178.8 (3)C32—C28—C44—C400.9 (5)
C1—C6—C12—C223.2 (4)C9—C28—C44—C40179.2 (3)
C14—C10—C13—C241.3 (4)F3—C38—C45—F2172.9 (3)
C9—C10—C13—C24178.5 (3)F7—C38—C45—F255.8 (3)
C13—C10—C14—C11175.9 (3)C50—C38—C45—F264.8 (3)
C9—C10—C14—C113.9 (4)F3—C38—C45—F859.4 (3)
C13—C10—C14—C51.4 (4)F7—C38—C45—F857.6 (3)
C9—C10—C14—C5178.8 (2)C50—C38—C45—F8178.2 (3)
C7—C11—C14—C100.3 (4)F3—C38—C45—C3561.5 (4)
C18—C11—C14—C10176.8 (2)F7—C38—C45—C35178.6 (3)
C7—C11—C14—C5177.4 (3)C50—C38—C45—C3560.8 (4)
C18—C11—C14—C50.3 (4)O3—C35—C45—F25.6 (4)
C23—C5—C14—C102.5 (4)O1—C35—C45—F2177.6 (3)
C23—C5—C14—C11174.7 (3)O3—C35—C45—F8112.3 (3)
N2—C7—C15—C19175.5 (3)O1—C35—C45—F864.6 (3)
C11—C7—C15—C191.5 (4)O3—C35—C45—C38128.1 (3)
N1—C2—C16—C3166.4 (4)O1—C35—C45—C3855.1 (4)
C1—C2—C16—C31111.1 (3)C44—C40—C46—C470.0 (6)
N1—C2—C16—C30115.0 (3)C40—C46—C47—C321.0 (6)
C1—C2—C16—C3067.5 (4)C28—C32—C47—C461.9 (6)
N1—C8—C17—C25176.3 (3)F9—C43—C49—F1172.4 (4)
C4—C8—C17—C250.9 (4)F6—C43—C49—F11172.1 (3)
C7—C11—C18—C264.1 (4)C41—C43—C49—F1149.6 (4)
C14—C11—C18—C26173.2 (3)F9—C43—C49—F1348.9 (4)
C7—C15—C19—N4174.0 (3)F6—C43—C49—F1366.7 (4)
C7—C15—C19—C266.1 (4)C41—C43—C49—F13170.9 (3)
C8—C4—C20—C276.3 (4)F9—C43—C49—F12166.9 (3)
C3—C4—C20—C27169.3 (3)F6—C43—C49—F1251.4 (4)
C1—C3—C21—C224.4 (4)C41—C43—C49—F1271.1 (4)
C4—C3—C21—C22170.5 (3)F3—C38—C50—F10173.6 (3)
C3—C21—C22—C120.1 (4)F7—C38—C50—F1059.0 (4)
N5—C12—C22—C21177.9 (3)C45—C38—C50—F1062.6 (4)
C6—C12—C22—C214.0 (4)F3—C38—C50—F1452.9 (4)
C14—C5—C23—C240.9 (4)F7—C38—C50—F1461.7 (4)
C10—C13—C24—N6179.7 (3)C45—C38—C50—F14176.7 (3)
C10—C13—C24—C232.9 (4)F3—C38—C50—F565.1 (4)
C5—C23—C24—N6178.7 (3)F7—C38—C50—F5179.7 (3)
C5—C23—C24—C131.8 (4)C45—C38—C50—F558.8 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N3—H3···O4i0.882.042.909 (4)171
N3—H3A···O1ii0.882.062.899 (3)159
N4—H4···O3iii0.882.263.088 (4)158
N4—H4A···O20.882.132.991 (3)166
C15—H15···O1iii0.952.623.353 (4)135
N5—H5A···O4iv0.882.162.934 (3)146
N5—H5B···O1iii0.882.303.076 (3)147
N5—H5B···F3iii0.882.543.208 (3)133
C26—H26···F10.952.613.184 (3)119
N6—H6A···O3v0.882.162.938 (3)147
N6—H6B···O2i0.882.563.184 (4)129
N6—H6B···F12i0.882.343.097 (4)144
C33—H33A···N3vi0.992.593.223 (4)122
Symmetry codes: (i) x1/2, y+1/2, z1/2; (ii) x+2, y, z+1; (iii) x+3/2, y+1/2, z+3/2; (iv) x1, y, z; (v) x+1, y, z+1; (vi) x1/2, y+1/2, z+1/2.
 

Funding information

Funding for this research was provided by: Japan Society for the Promotion of Science (grant No. 21K05089).

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