organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2414-3146

Methyl α-D,L-sorboside

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aGraduate School of Science for Creative Emergence, Kagawa University, 2217-20 Hayashi-cho, Takamatsu, Kagawa 761-0396, Japan, and bFushimi Pharmaceutical Co Ltd, 307 Minatomachi, Marugame, Kagawa 763-8605, Japan
*Correspondence e-mail: [email protected]

Edited by L. Van Meervelt, Katholieke Universiteit Leuven, Belgium (Received 5 August 2026; accepted 19 August 2026; online 20 August 2026)

The title compound, C7H14O6, was prepared from an equimolar mixture of D- and L-sorbose (D:L = 1:1) by Fischer glycosidation in methanol and crystallized from water. The title compound crystallizes in the ortho­rhom­bic space group Pna21. The asymmetric unit contains one mol­ecule each of methyl α-D-sorboside and methyl α-L-sorboside. In the crystal, the mol­ecules are linked by O—H⋯O hydrogen bonds, forming a two-dimensional network parallel to (001).

3D view (loading...)
[Scheme 3D1]
Chemical scheme
[Scheme 1]

Structure description

L-Sorbose is a rare sugar and was the first L-form hexose found in nature (Nordenson et al., 1979View full citation). Sorbosides are derivatives of sorbose in which the anomeric hy­droxy group at C2 is replaced by an alk­oxy group. The crystal structures of racemic α-D,L-sorbose (CSD refcode HELYOP; Taguchi et al., 2018View full citation) and methyl α-L-sorboside monohydrate (CSD refcode LAMPAU; Matsumoto et al., 2021View full citation) have previously been reported. In the present study, single crystals of anhydrous methyl α-D,L-sorboside were prepared to determine its mol­ecular structure, crystal packing and inter­molecular inter­actions.

The title compound crystallizes in the ortho­rhom­bic space group Pna21. The asymmetric unit contains two crystallographically independent mol­ecules, one mol­ecule each of methyl α-D-sorboside and methyl α-L-sorboside (Fig. 1[link]). The D and L enanti­omers adopt mirror-related 5C2 and 2C5 chair conformations, respectively. In both mol­ecules, the meth­oxy substituent at the anomeric carbon atom (C12 or C22) occupies an axial position. The unit cell therefore contains four mol­ecules of each enanti­omer.

[Figure 1]
Figure 1
Mol­ecular structure of the two crystallographically independent mol­ecules in the asymmetric unit, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. The O23—H23⋯O14 hydrogen bond linking the two mol­ecules is shown as a dashed line. H atoms are shown as spheres of arbitrary radius and are not labelled.

The formula weight of methyl α-D,L-sorboside is 194.18, approximately 7.8% greater than that of α-D,L-sorbose (180.16). As both structures have Z = 8, their unit-cell volumes can be compared directly. The unit-cell volume of the title compound [1683.06 (13) Å3] is 232.20 Å3, or approximately 16.0%, larger than that of α-D,L-sorbose [1450.86 (6) Å3; Taguchi et al., 2018View full citation]. This increase is consistent with the replacement of the anomeric hy­droxy group by a meth­oxy group, although the unit-cell volume also depends on the mol­ecular packing.

In the crystal, the mol­ecules are linked by the five inter­molecular O—H⋯O hydrogen bonds listed in Table 1[link]: O23—H23⋯O14, O24—H24⋯O26, O25—H25⋯O22, O11—H11⋯O13 and O13—H13⋯O24. The donor⋯acceptor distances range from 2.748 (4) to 2.924 (4) Å. The meth­oxy oxygen atom O22 and the ring oxygen atom O26 act as acceptors, while the remaining listed acceptors are hy­droxy oxygen atoms. Collectively, these hydrogen bonds generate a two-dimensional network parallel to (001), as shown in Fig. 2[link].

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O11—H11⋯O13i 0.82 2.00 2.783 (4) 160
O13—H13⋯O24ii 0.82 1.94 2.748 (4) 167
O23—H23⋯O14 0.82 2.00 2.805 (4) 169
O24—H24⋯O26iii 0.82 2.14 2.924 (4) 160
O25—H25⋯O22iv 0.82 2.27 2.862 (4) 129
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation; (iv) Mathematical equation.
[Figure 2]
Figure 2
A portion of the crystal packing showing the five O—H⋯O hydrogen bonds listed in Table 1[link] as dashed lines. These inter­actions generate a two-dimensional hydrogen-bonded network parallel to (001). The crystallographic axes are indicated. The mol­ecules highlighted at the centre are shown using a ball-and-stick representation, whereas the surrounding mol­ecules are shown using a capped-stick representation.

Synthesis and crystallization

Methyl α-D,L-sorboside was prepared from an equimolar mixture of D- and L-sorbose (D:L = 1:1) by Fischer glycosidation in methanol. The reaction product was purified by ion-exchange chromatography using Dowex 50 W–X2 resin in the Ca2+ form, with deionized water as the eluent. Fractions containing the target compound, as identified by HPLC, were combined and concentrated to give a syrup. The product was then dissolved in water, and the solution was allowed to evaporate slowly at room temperature. Colorless block-shaped single crystals suitable for single-crystal X-ray diffraction analysis were obtained.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. The Flack parameter was 0.29 (7), determined using 1297 quotients of the type [(I+) − (I)]/[(I+) + (I)] (Parsons et al., 2013View full citation). Since the crystal contains both enanti­omers, this parameter concerns the polarity of the noncentrosymmetric crystal rather than the assignment of the mol­ecular absolute configurations.

Table 2
Experimental details

Crystal data
Chemical formula C7H14O6
Mr 194.18
Crystal system, space group Orthorhombic, Pna21
Temperature (K) 296
a, b, c (Å) 12.9744 (6), 6.1793 (3), 20.9927 (9)
V3) 1683.06 (13)
Z 8
Radiation type Cu Kα
μ (mm−1) 1.17
Crystal size (mm) 0.10 × 0.10 × 0.10
 
Data collection
Diffractometer Rigaku R-AXIS RAPID
Absorption correction Multi-scan (ABSCOR; Rigaku, 1995View full citation)
Tmin, Tmax 0.639, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 16861, 3055, 2873
Rint 0.060
(sin θ/λ)max−1) 0.602
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.048, 0.134, 1.06
No. of reflections 3055
No. of parameters 245
No. of restraints 1
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.59, −0.26
Absolute structure Flack x determined using 1297 quotients [(I+)−(I)]/[(I+)+(I)] (Parsons et al., 2013View full citation)
Absolute structure parameter 0.29 (7)
Computer programs: RAPID-AUTO (Rigaku, 2009View full citation), SHELXT2018/2 (Sheldrick, 2015aView full citation), SHELXL2018/3 (Sheldrick, 2015bView full citation) and OLEX2 (Dolomanov et al., 2009View full citation).

Structural data


Computing details top

Methyl α-D,L-sorboside top
Crystal data top
C7H14O6Dx = 1.533 Mg m3
Mr = 194.18Cu Kα radiation, λ = 1.54187 Å
Orthorhombic, Pna21Cell parameters from 3106 reflections
a = 12.9744 (6) Åθ = 4.4–68.2°
b = 6.1793 (3) ŵ = 1.17 mm1
c = 20.9927 (9) ÅT = 296 K
V = 1683.06 (13) Å3Block, clear light colourless
Z = 80.1 × 0.1 × 0.1 mm
F(000) = 832
Data collection top
Rigaku R-AXIS RAPID
diffractometer
2873 reflections with I > 2σ(I)
ω scansRint = 0.060
Absorption correction: multi-scan
(ABSCOR; Rigaku, 1995)
θmax = 68.2°, θmin = 4.2°
Tmin = 0.639, Tmax = 1.000h = 1415
16861 measured reflectionsk = 77
3055 independent reflectionsl = 2525
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.048 w = 1/[σ2(Fo2) + (0.1016P)2 + 0.0448P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.134(Δ/σ)max = 0.005
S = 1.06Δρmax = 0.59 e Å3
3055 reflectionsΔρmin = 0.25 e Å3
245 parametersAbsolute structure: Flack x determined using 1297 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
1 restraintAbsolute structure parameter: 0.29 (7)
Primary atom site location: iterative
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. The structure was solved using SHELXT (Sheldrick, 2015a) and refined against F2 by full-matrix least-squares methods using SHELXL (Sheldrick, 2015b). All non-hydrogen atoms were refined anisotropically. All H atoms were placed in calculated positions and refined using constrained models. C-bound H atoms were refined using riding models, with C—H = 0.96–0.98 Å and Uiso(H) = 1.2Ueq(C), or 1.5Ueq(C) for methyl groups. Hydroxy H atoms were treated as rotating groups, with O—H = 0.82 Å and Uiso(H) = 1.5Ueq(O). The methyl groups at C17 and C27 were refined as rotating groups using AFIX 137. The final refinement gave R1 = 0.0481 for reflections with I > 2σ(I) and wR2 = 0.1342 for all data. The maximum and minimum residual electron densities were 0.59 and -0.26 e Å-3, respectively.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O110.4003 (3)0.3240 (5)0.78069 (16)0.0671 (10)
H110.3874710.4519340.7739440.101*
O120.4126 (2)0.0201 (4)0.64021 (12)0.0396 (6)
O130.4084 (2)0.2354 (4)0.75361 (13)0.0410 (6)
H130.4369540.1864410.7853230.062*
O140.1999 (2)0.3795 (4)0.74496 (14)0.0480 (7)
H140.2327480.4926330.7430660.072*
O150.0851 (3)0.1770 (7)0.64158 (15)0.0647 (10)
H150.0443670.2441860.6639350.097*
O160.2831 (2)0.2182 (4)0.67377 (12)0.0392 (6)
C110.4427 (3)0.2310 (6)0.72577 (19)0.0420 (9)
H11A0.5033040.1478030.7373350.050*
H11B0.4642280.3448560.6968790.050*
C120.3666 (3)0.0849 (5)0.69220 (16)0.0303 (7)
C130.3273 (3)0.0967 (5)0.73539 (14)0.0302 (7)
H13A0.2980120.0313930.7738880.036*
C140.2434 (3)0.2254 (5)0.70227 (15)0.0334 (7)
H14A0.2724270.3003950.6652590.040*
C150.1593 (3)0.0737 (6)0.68080 (16)0.0401 (8)
H15A0.1248570.0127940.7182700.048*
C160.2033 (3)0.1069 (7)0.6415 (2)0.0461 (9)
H16A0.2301630.0481940.6019690.055*
H16B0.1488580.2082350.6309110.055*
C170.4440 (4)0.1097 (8)0.5876 (2)0.0565 (11)
H17A0.4634470.2507640.6025230.085*
H17B0.3878950.1230210.5579990.085*
H17C0.5016600.0429480.5667900.085*
O210.1728 (3)0.2626 (6)0.83033 (15)0.0693 (10)
H210.1210870.3384970.8324710.104*
O220.16767 (18)0.0279 (4)0.98010 (10)0.0352 (5)
O230.1854 (2)0.2583 (4)0.87343 (12)0.0432 (6)
H230.1844120.3076500.8371780.065*
O240.0240 (3)0.4150 (5)0.86951 (14)0.0574 (8)
H240.0210340.5347010.8862930.086*
O250.1493 (3)0.2152 (8)0.97162 (17)0.0809 (13)
H250.1979860.2594790.9504100.121*
O260.04060 (18)0.1940 (4)0.93706 (13)0.0391 (6)
C210.2054 (3)0.2084 (6)0.8919 (2)0.0443 (9)
H21A0.2143720.3394030.9167810.053*
H21B0.2714190.1351030.8896770.053*
C220.1280 (2)0.0639 (5)0.92409 (15)0.0295 (7)
C230.0973 (3)0.1279 (5)0.88316 (15)0.0313 (7)
H23A0.0737880.0738390.8417400.038*
C240.0105 (3)0.2554 (6)0.91335 (17)0.0373 (8)
H24A0.0364530.3274480.9517150.045*
C250.0787 (3)0.1094 (7)0.9316 (2)0.0471 (9)
H25A0.1140180.0593670.8930780.057*
C260.0401 (3)0.0828 (7)0.9690 (2)0.0481 (9)
H26A0.0967930.1820730.9762390.058*
H26B0.0154080.0339961.0101440.058*
C270.1993 (4)0.1151 (7)1.0295 (2)0.0519 (10)
H27A0.2504290.0452991.0554610.078*
H27B0.1409190.1525061.0553720.078*
H27C0.2279870.2439901.0111480.078*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O110.103 (3)0.0426 (15)0.0562 (17)0.0166 (18)0.0040 (18)0.0075 (14)
O120.0445 (14)0.0373 (13)0.0370 (11)0.0016 (11)0.0099 (10)0.0032 (10)
O130.0477 (15)0.0299 (12)0.0454 (13)0.0059 (10)0.0151 (11)0.0024 (10)
O140.0561 (17)0.0349 (13)0.0529 (15)0.0097 (12)0.0092 (13)0.0099 (11)
O150.0482 (18)0.090 (3)0.0559 (17)0.0319 (17)0.0164 (14)0.0109 (17)
O160.0336 (13)0.0310 (11)0.0529 (14)0.0064 (10)0.0059 (11)0.0074 (10)
C110.040 (2)0.0313 (17)0.054 (2)0.0046 (15)0.0051 (17)0.0005 (14)
C120.0278 (16)0.0275 (16)0.0356 (15)0.0033 (12)0.0015 (13)0.0033 (12)
C130.0364 (18)0.0258 (14)0.0285 (14)0.0027 (13)0.0019 (12)0.0001 (11)
C140.0387 (19)0.0325 (16)0.0290 (14)0.0071 (14)0.0067 (14)0.0001 (12)
C150.0277 (18)0.051 (2)0.0416 (19)0.0050 (15)0.0044 (13)0.0019 (14)
C160.032 (2)0.052 (2)0.055 (2)0.0016 (17)0.0107 (16)0.0136 (16)
C170.055 (3)0.068 (3)0.047 (2)0.016 (2)0.0114 (19)0.012 (2)
O210.092 (3)0.0563 (19)0.0600 (19)0.0102 (18)0.0099 (18)0.0186 (15)
O220.0382 (12)0.0340 (11)0.0335 (11)0.0021 (10)0.0099 (10)0.0036 (10)
O230.0476 (14)0.0363 (13)0.0457 (14)0.0136 (11)0.0039 (12)0.0085 (11)
O240.079 (2)0.0365 (14)0.0570 (16)0.0221 (14)0.0342 (15)0.0060 (12)
O250.051 (2)0.128 (3)0.063 (2)0.050 (2)0.0025 (17)0.013 (2)
O260.0336 (13)0.0321 (11)0.0515 (13)0.0043 (10)0.0045 (11)0.0018 (10)
C210.041 (2)0.038 (2)0.054 (2)0.0077 (15)0.0128 (17)0.0017 (15)
C220.0285 (16)0.0250 (14)0.0351 (15)0.0041 (12)0.0003 (12)0.0006 (12)
C230.0353 (18)0.0281 (16)0.0306 (15)0.0029 (13)0.0035 (13)0.0007 (12)
C240.043 (2)0.0344 (16)0.0349 (15)0.0111 (14)0.0144 (15)0.0068 (13)
C250.0335 (19)0.066 (3)0.0417 (17)0.0126 (17)0.0028 (16)0.0048 (17)
C260.0255 (18)0.067 (3)0.052 (2)0.0012 (16)0.0050 (16)0.0044 (18)
C270.051 (2)0.061 (3)0.044 (2)0.012 (2)0.0096 (17)0.0136 (18)
Geometric parameters (Å, º) top
O11—H110.8200O21—H210.8200
O11—C111.401 (5)O21—C211.401 (5)
O12—C121.403 (4)O22—C221.403 (4)
O12—C171.425 (4)O22—C271.424 (4)
O13—H130.8200O23—H230.8200
O13—C131.410 (4)O23—C231.414 (4)
O14—H140.8200O24—H240.8200
O14—C141.424 (4)O24—C241.421 (4)
O15—H150.8200O25—H250.8200
O15—C151.418 (4)O25—C251.404 (5)
O16—C121.415 (4)O26—C221.417 (4)
O16—C161.416 (5)O26—C261.420 (4)
C11—H11A0.9700C21—H21A0.9700
C11—H11B0.9700C21—H21B0.9700
C11—C121.513 (5)C21—C221.504 (5)
C12—C131.530 (4)C22—C231.518 (4)
C13—H13A0.9800C23—H23A0.9800
C13—C141.517 (4)C23—C241.513 (5)
C14—H14A0.9800C24—H24A0.9800
C14—C151.507 (5)C24—C251.516 (6)
C15—H15A0.9800C25—H25A0.9800
C15—C161.501 (5)C25—C261.509 (6)
C16—H16A0.9700C26—H26A0.9700
C16—H16B0.9700C26—H26B0.9700
C17—H17A0.9600C27—H27A0.9600
C17—H17B0.9600C27—H27B0.9600
C17—H17C0.9600C27—H27C0.9600
C11—O11—H11109.5C21—O21—H21109.5
C12—O12—C17117.7 (3)C22—O22—C27117.7 (3)
C13—O13—H13109.5C23—O23—H23109.5
C14—O14—H14109.5C24—O24—H24109.5
C15—O15—H15109.5C25—O25—H25109.5
C12—O16—C16114.0 (3)C22—O26—C26114.0 (3)
O11—C11—H11A109.2O21—C21—H21A109.5
O11—C11—H11B109.2O21—C21—H21B109.5
O11—C11—C12111.8 (3)O21—C21—C22110.8 (3)
H11A—C11—H11B107.9H21A—C21—H21B108.1
C12—C11—H11A109.2C22—C21—H21A109.5
C12—C11—H11B109.2C22—C21—H21B109.5
O12—C12—O16112.5 (3)O22—C22—O26111.2 (3)
O12—C12—C11111.1 (3)O22—C22—C21111.8 (3)
O12—C12—C13105.3 (3)O22—C22—C23104.8 (2)
O16—C12—C11106.2 (3)O26—C22—C21106.5 (3)
O16—C12—C13109.5 (3)O26—C22—C23110.0 (3)
C11—C12—C13112.3 (3)C21—C22—C23112.6 (3)
O13—C13—C12111.0 (3)O23—C23—C22108.3 (3)
O13—C13—H13A108.4O23—C23—H23A108.5
O13—C13—C14109.9 (3)O23—C23—C24111.5 (3)
C12—C13—H13A108.4C22—C23—H23A108.5
C14—C13—C12110.6 (3)C24—C23—C22111.4 (3)
C14—C13—H13A108.4C24—C23—H23A108.5
O14—C14—C13110.3 (3)O24—C24—C23108.9 (3)
O14—C14—H14A109.6O24—C24—H24A109.0
O14—C14—C15108.5 (3)O24—C24—C25109.7 (3)
C13—C14—H14A109.6C23—C24—H24A109.0
C15—C14—C13109.3 (3)C23—C24—C25111.4 (3)
C15—C14—H14A109.6C25—C24—H24A109.0
O15—C15—C14112.6 (3)O25—C25—C24111.9 (4)
O15—C15—H15A109.2O25—C25—H25A109.6
O15—C15—C16105.9 (3)O25—C25—C26105.8 (3)
C14—C15—H15A109.2C24—C25—H25A109.6
C16—C15—C14110.6 (3)C26—C25—C24110.3 (3)
C16—C15—H15A109.2C26—C25—H25A109.6
O16—C16—C15112.1 (3)O26—C26—C25112.4 (3)
O16—C16—H16A109.2O26—C26—H26A109.1
O16—C16—H16B109.2O26—C26—H26B109.1
C15—C16—H16A109.2C25—C26—H26A109.1
C15—C16—H16B109.2C25—C26—H26B109.1
H16A—C16—H16B107.9H26A—C26—H26B107.9
O12—C17—H17A109.5O22—C27—H27A109.5
O12—C17—H17B109.5O22—C27—H27B109.5
O12—C17—H17C109.5O22—C27—H27C109.5
H17A—C17—H17B109.5H27A—C27—H27B109.5
H17A—C17—H17C109.5H27A—C27—H27C109.5
H17B—C17—H17C109.5H27B—C27—H27C109.5
O11—C11—C12—O12175.4 (3)O21—C21—C22—O22167.9 (3)
O11—C11—C12—O1662.0 (4)O21—C21—C22—O2670.4 (4)
O11—C11—C12—C1357.7 (4)O21—C21—C22—C2350.2 (4)
O12—C12—C13—O1357.7 (3)O22—C22—C23—O2358.0 (3)
O12—C12—C13—C1464.7 (3)O22—C22—C23—C2464.9 (3)
O13—C13—C14—O1463.0 (4)O23—C23—C24—O2466.3 (4)
O13—C13—C14—C15177.8 (3)O23—C23—C24—C25172.6 (3)
O14—C14—C15—O1568.1 (4)O24—C24—C25—O2572.3 (4)
O14—C14—C15—C16173.7 (3)O24—C24—C25—C26170.3 (3)
O15—C15—C16—O16176.9 (3)O25—C25—C26—O26173.8 (3)
O16—C12—C13—O13178.8 (3)O26—C22—C23—O23177.6 (3)
O16—C12—C13—C1456.5 (4)O26—C22—C23—C2454.7 (3)
C11—C12—C13—O1363.4 (3)C21—C22—C23—O2363.8 (4)
C11—C12—C13—C14174.3 (3)C21—C22—C23—C24173.3 (3)
C12—O16—C16—C1558.2 (4)C22—O26—C26—C2559.0 (4)
C12—C13—C14—O14174.0 (3)C22—C23—C24—O24172.5 (3)
C12—C13—C14—C1554.9 (3)C22—C23—C24—C2551.5 (4)
C13—C14—C15—O15171.6 (3)C23—C24—C25—O25167.1 (3)
C13—C14—C15—C1653.4 (4)C23—C24—C25—C2649.7 (4)
C14—C15—C16—O1654.6 (4)C24—C25—C26—O2652.7 (5)
C16—O16—C12—O1258.4 (4)C26—O26—C22—O2256.7 (4)
C16—O16—C12—C11179.8 (3)C26—O26—C22—C21178.8 (3)
C16—O16—C12—C1358.3 (4)C26—O26—C22—C2358.9 (4)
C17—O12—C12—O1652.4 (4)C27—O22—C22—O2658.6 (4)
C17—O12—C12—C1166.5 (4)C27—O22—C22—C2160.3 (4)
C17—O12—C12—C13171.7 (3)C27—O22—C22—C23177.4 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O11—H11···O13i0.822.002.783 (4)160
O13—H13···O24ii0.821.942.748 (4)167
O23—H23···O140.822.002.805 (4)169
O24—H24···O26iii0.822.142.924 (4)160
O25—H25···O22iv0.822.272.862 (4)129
Symmetry codes: (i) x, y+1, z; (ii) x1/2, y1/2, z; (iii) x, y1, z; (iv) x+1/2, y1/2, z.
 

Acknowledgements

The authors gratefully acknowledge Professor Genta Sakane (Okayama University of Science) for valuable discussions and technical guidance. This work was supported by the JST Support for Pioneering Research Initiated by the Next Generation (SPRING) program.

References

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