organic compounds
2-Cyano-N′-[(1E)-1-(3,4-dimethoxyphenyl)ethylidene]acetohydrazide
aDepartment of Chemistry, Annamalai University, Annamalainagar, Chidambaram 608 002, India, and bPG & Research Department of Physics, Government Arts College, Melur 625 106, India
*Correspondence e-mail: [email protected]
The non-H part of the molecule of the title compound, C13H15N3O3, is nearly planar, with the 2-cyano-N′-[(1E)-ethylidene]acetohydrazide moiety and the dimethoxy phenol ring forming a dihedral angle of 2.5 (1)°. Intermolecular N—H⋯O, C—H⋯O and C—H⋯π interactions are mainly responsible for the cohesion within the The intermolecular interactions were quantified and analysed using Hirshfeld surface analysis, revealing that H⋯H interactions contribute most to the crystal packing (36.9%). The volume of the crystal voids was calculated to be 167.8 Å3 (13% of the unit-cell volume).
Keywords: benzohydrazine; intermolecular hydrogen bonds; Hirshfeld surface analysis; crystal structure.
CCDC reference: 2501701
Structure description
Hydrazone derivatives have long been valued in medicinal and organic chemistry because they are easy to prepare, structurally flexible, and capable of exhibiting a wide range of biological activities. Within this class, acyl and heterocycle-linked are especially notable, as many of them display antidiabetic, anticancer, antimicrobial, antioxidant, and anti-inflammatory properties (Punitha et al., 2020
). In the present work, the title compound, (I), was chosen due to the particular ombination of functional groups that are known to enhance biological effectiveness. The hydrazone unit (–C=N–NH–) provides an extended- conjugated system that supports strong intermolecular interactions and can promote favourable binding within enzyme active sites. The 3,4-dimethoxyphenyl ring adds lipophilicity, encouraging π–π stacking and improving membrane permeability, which together may enhance pharmacological performance. The cyano (–C≡N) group, being a strong electron-withdrawing substituent, fine-tunes the electronic character of the molecule, increases hydrogen-bond acceptor strength, and is often associated with improved antimicrobial and anticancer effects (Senthilkumar et al., 2021
; Maheswari et al., 2025
). The coexistence of electron-donating methoxy groups and an electron-withdrawing cyano group creates an internal charge-transfer environment, a feature commonly linked to stronger biological responses in hydrazone frameworks. Because of this combination of structural and electronic attributes, the selected compound offers enhanced biological activity, making it a promising candidate for further pharmacological development (Senthilkumar et al., 2020
).
The molecular structure of (I) is displayed in Fig. 1
. The phenyl ring (C6–C11) is planar with a maximum deviation of 0.010 (3) Å for atom C9, and its attached methoxy atoms O2, C12, O3 and C13 deviate by −0.015 (2), 0.075 (4), 0.036 (2) and 0.218 (4) Å, respectively. The 2-cyano-N′-[(1E)-ethylidene]acetohydrazide moiety (N1/C1/C2/C3/O1/N2/N3/C4/C5) is nearly planar with a maximum deviation of 0.120 (4) Å for atom C5. This moiety forms a dihedral angle of 2.5 (1)° with the dimethoxy phenyl ring. Weak intramolecular C5—H5A⋯N2 and C7—H7⋯N3 contacts, forming two S(5) ring motifs (Bernstein et al., 1995
) may help to establish the solid-state conformation (Table 1
, Fig. 1
).
|
| Figure 1 Molecular structure of (I) showing the atom-labelling scheme and the intramolecular hydrogen bonds (dashed lines). Displacement ellipsoids are drawn at the 50% probability level. Only one part of the disordered methyl group at C5 is shown. |
In the crystal, molecules associate pairwise through N2—H2⋯O1i and C5—H5A⋯O1i hydrogen bonds (Table 1
) into inversion dimers with R22(8) and R22(14) graph-set motifs (Etter et al., 1990
; Bernstein et al., 1995
), as shown in Fig. 2
. The molecules are linked into a C(7) chain motif by C5—H5E⋯O2ii hydrogen bonds running parallel to [001] (Table 1
, Fig. 3
). Moreover, molecules are further linked along the same direction into a C(5) chain motif by C—H⋯π interactions, C13—H13B⋯Cg, where Cg is the centroid of the symmetry-related C6–C11 benzene ring at (x, −y + , z +
) (Table 1
, Fig. 4
).
| Figure 2 The formation of a centrosymmetric dimer in the crystal structure of (I) through N—H⋯O and C—H⋯O hydrogen bonds. [Symmetry code: (a) −x + 1, −y + 1, −z]. |
| | Figure 3 The crystal packing of compound (I) viewed along the b axis. The C—H⋯O hydrogen bonds are shown as dashed lines. For clarity, H atoms not involved in hydrogen bonds have been omitted. |
| | Figure 4 The crystal packing of (I). C—H⋯π interactions are shown as dashed lines. For clarity, H atoms not involved in these interactions have been omitted. |
In order to further characterize and quantify the intermolecular interactions in the title compound, a Hirshfeld surface (HS) analysis (Spackman & Jayatilaka, 2009
) was carried out using CrystalExplorer (Spackman et al., 2021
). The HS mapped over dnorm is illustrated in Fig. 5
where the deep-red spots indicative of strong interactions occur at O1, H2 and H5A, and these atoms are responsible for intermolecular N—H⋯O and C—H⋯O hydrogen bonds discussed above.
| Figure 5 A view of the Hirshfeld surface mapped over dnorm for compound (I). |
The associated two-dimensional fingerprint plots (McKinnon et al., 2007
) provide quantitative information about the non-covalent interactions in the crystal packing in terms of the percentage contribution of the interatomic contacts (Spackman & McKinnon, 2002
). As shown in Fig. 6
, the overall two-dimensional fingerprint plot for compound (I) is delineated into the different contact types, revealing that H⋯H (36.9%) and H⋯O/O⋯H (22.2%) are the main contributors to the crystal packing.
| Figure 6 Two-dimensional fingerprint plots for compound (I), showing (a) all interactions, and delineated into (b) H⋯H, (c) H⋯O/O⋯H, (d) H⋯C/C⋯H, (e) H⋯N/N⋯H, (f) N⋯C/C⋯N, (g) N⋯N and (h) O⋯C/C⋯O interactions. The di and de values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface. |
A void analysis was performed by adding up the electron densities of the spherically symmetric atoms contained in the (Turner et al., 2011
). The void surface is defined as an isosurface of the procrystal electron density and is calculated for the whole unit cell where the void surface meets the boundary of the unit cell and capping faces are generated to create an enclosed volume. The volume of the crystal voids (Fig. 7
) was calculated to be 168 Å3 (13% of the unit-cell volume). Fig. 7
(b) also reveals that individual molecules are arranged in layers parallel to (10).
| Figure 7 Graphical views of voids in the crystal packing of compound (I) viewed down the (a) a-axis and (b) b-axis directions. |
Synthesis and crystallization
Compound (I) was prepared through a condensation reaction involving an equimolar ratio of 2-cyanoacetohydrazide (0.05 mol) and 3,4-dimethoxyacetophenone (0.05 mol). The reagents were placed into a clean reaction flask where methanol served as the reaction medium. A few drops of glacial acetic acid were added to promote the formation of the hydrazone bond. The mixture was then heated under reflux for about 6–8 h. Throughout this period, the progress of the reaction was checked at intervals using thin-layer chromatography (TLC) to confirm that the starting materials were being fully consumed. Once the reaction reached completion, the mixture was allowed to cool gradually to room temperature, during which a solid product began to separate out. The resulting precipitate was collected by filtration, thoroughly washed to remove any remaining impurities, and dried under reduced pressure to eliminate traces of solvent. Final purification was achieved by recrystallizing the crude product from warm ethanol solution, affording the desired hydrazone derivative with 75% yield.
Refinement
Crystal data, data collection and structure details are summarized in Table 2
. The methyl hydrogen atoms at C5 were refined as equally disordered (using an AFIX 127 instruction with SHELXL; Sheldrick, 2015b
) with C—H = 0.98 Å.
|
Structural data
CCDC reference: 2501701
contains datablocks I, shelx. DOI: https://doi.org/10.1107/S2414314626000891/wm4242sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314626000891/wm4242Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314626000891/wm4242Isup3.cml
| C13H15N3O3 | F(000) = 552 |
| Mr = 261.28 | Dx = 1.297 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 11.2308 (13) Å | Cell parameters from 5190 reflections |
| b = 11.7792 (13) Å | θ = 2.5–24.4° |
| c = 10.3668 (12) Å | µ = 0.09 mm−1 |
| β = 102.692 (4)° | T = 300 K |
| V = 1337.9 (3) Å3 | Plate, colourless |
| Z = 4 | 0.46 × 0.12 × 0.06 mm |
| Bruker APEXII CCD diffractometer | 1510 reflections with I > 2σ(I) |
| Radiation source: i-mu-s microfocus source | Rint = 0.064 |
| φ and ω scans | θmax = 28.3°, θmin = 1.9° |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | h = −14→14 |
| Tmin = 0.672, Tmax = 0.746 | k = −15→15 |
| 25559 measured reflections | l = −13→13 |
| 3317 independent reflections |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.067 | w = 1/[σ2(Fo2) + (0.1011P)2 + 0.4583P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.239 | (Δ/σ)max < 0.001 |
| S = 1.04 | Δρmax = 0.34 e Å−3 |
| 3317 reflections | Δρmin = −0.18 e Å−3 |
| 174 parameters | Extinction correction: SHELXL (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.008 (3) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| O1 | 0.4532 (2) | 0.63384 (18) | −0.0687 (2) | 0.0873 (8) | |
| O2 | 0.87019 (19) | 0.96378 (15) | 0.55091 (18) | 0.0716 (6) | |
| O3 | 1.00787 (18) | 0.85504 (16) | 0.74705 (17) | 0.0680 (6) | |
| N1 | 0.3940 (3) | 0.9169 (3) | −0.1399 (4) | 0.1051 (11) | |
| N2 | 0.5860 (2) | 0.61306 (19) | 0.1263 (2) | 0.0626 (7) | |
| H2 | 0.585827 | 0.540243 | 0.120280 | 0.075* | |
| N3 | 0.65690 (19) | 0.66651 (18) | 0.2344 (2) | 0.0590 (6) | |
| C1 | 0.4510 (3) | 0.8648 (3) | −0.0567 (3) | 0.0750 (9) | |
| C2 | 0.5239 (3) | 0.8034 (2) | 0.0532 (3) | 0.0680 (8) | |
| H2A | 0.495556 | 0.820980 | 0.132830 | 0.082* | |
| H2B | 0.608161 | 0.827932 | 0.066527 | 0.082* | |
| C3 | 0.5174 (2) | 0.6761 (2) | 0.0306 (3) | 0.0629 (7) | |
| C4 | 0.7271 (2) | 0.6060 (2) | 0.3220 (3) | 0.0554 (7) | |
| C5 | 0.7404 (3) | 0.4793 (2) | 0.3148 (3) | 0.0791 (9) | |
| H5A | 0.696800 | 0.452706 | 0.229983 | 0.119* | 0.5 |
| H5B | 0.707704 | 0.444113 | 0.383042 | 0.119* | 0.5 |
| H5C | 0.825218 | 0.460173 | 0.326694 | 0.119* | 0.5 |
| H5D | 0.789682 | 0.451955 | 0.396497 | 0.119* | 0.5 |
| H5E | 0.778777 | 0.460548 | 0.243437 | 0.119* | 0.5 |
| H5F | 0.661263 | 0.444489 | 0.299785 | 0.119* | 0.5 |
| C6 | 0.8006 (2) | 0.6688 (2) | 0.4357 (2) | 0.0544 (7) | |
| C7 | 0.7997 (2) | 0.7877 (2) | 0.4374 (3) | 0.0557 (7) | |
| H7 | 0.752355 | 0.826757 | 0.366329 | 0.067* | |
| C8 | 0.8673 (2) | 0.8482 (2) | 0.5422 (2) | 0.0544 (7) | |
| C9 | 0.9413 (2) | 0.7895 (2) | 0.6492 (2) | 0.0548 (7) | |
| C10 | 0.9413 (3) | 0.6734 (2) | 0.6487 (3) | 0.0627 (7) | |
| H10 | 0.987959 | 0.634148 | 0.720009 | 0.075* | |
| C11 | 0.8724 (3) | 0.6137 (2) | 0.5426 (3) | 0.0646 (8) | |
| H11 | 0.874624 | 0.534744 | 0.543617 | 0.078* | |
| C12 | 0.8042 (3) | 1.0254 (2) | 0.4392 (3) | 0.0795 (9) | |
| H12A | 0.812865 | 1.105355 | 0.456610 | 0.119* | |
| H12B | 0.836055 | 1.007186 | 0.363009 | 0.119* | |
| H12C | 0.719483 | 1.005024 | 0.422915 | 0.119* | |
| C13 | 1.0939 (3) | 0.7968 (3) | 0.8472 (3) | 0.0808 (10) | |
| H13A | 1.135675 | 0.850615 | 0.910895 | 0.121* | |
| H13B | 1.051878 | 0.742740 | 0.890291 | 0.121* | |
| H13C | 1.152076 | 0.758002 | 0.807590 | 0.121* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0962 (16) | 0.0556 (12) | 0.0888 (15) | −0.0086 (11) | −0.0261 (13) | −0.0013 (11) |
| O2 | 0.0960 (14) | 0.0461 (11) | 0.0650 (12) | 0.0002 (10) | 0.0014 (10) | −0.0039 (9) |
| O3 | 0.0821 (13) | 0.0586 (11) | 0.0568 (11) | −0.0016 (10) | 0.0011 (10) | −0.0062 (9) |
| N1 | 0.102 (2) | 0.081 (2) | 0.118 (3) | 0.0087 (18) | −0.006 (2) | 0.0182 (19) |
| N2 | 0.0645 (14) | 0.0452 (12) | 0.0703 (15) | −0.0035 (10) | −0.0021 (12) | −0.0056 (11) |
| N3 | 0.0589 (13) | 0.0472 (12) | 0.0648 (14) | −0.0062 (10) | 0.0006 (11) | −0.0067 (11) |
| C1 | 0.0699 (19) | 0.0540 (17) | 0.095 (2) | 0.0030 (15) | 0.0049 (18) | 0.0030 (17) |
| C2 | 0.0673 (17) | 0.0479 (15) | 0.082 (2) | −0.0003 (13) | 0.0028 (15) | −0.0026 (14) |
| C3 | 0.0587 (16) | 0.0524 (15) | 0.0709 (18) | −0.0058 (13) | −0.0004 (14) | −0.0005 (14) |
| C4 | 0.0586 (15) | 0.0477 (14) | 0.0603 (16) | −0.0027 (12) | 0.0136 (13) | −0.0004 (12) |
| C5 | 0.100 (2) | 0.0519 (17) | 0.075 (2) | −0.0004 (16) | −0.0025 (17) | −0.0036 (15) |
| C6 | 0.0588 (15) | 0.0478 (14) | 0.0558 (15) | −0.0019 (12) | 0.0108 (12) | 0.0000 (12) |
| C7 | 0.0621 (16) | 0.0491 (14) | 0.0553 (15) | −0.0007 (12) | 0.0113 (13) | 0.0010 (12) |
| C8 | 0.0614 (15) | 0.0480 (14) | 0.0534 (15) | −0.0002 (12) | 0.0115 (12) | −0.0005 (12) |
| C9 | 0.0592 (15) | 0.0549 (15) | 0.0494 (14) | −0.0010 (12) | 0.0103 (12) | −0.0049 (12) |
| C10 | 0.0705 (17) | 0.0559 (16) | 0.0566 (16) | 0.0007 (13) | 0.0032 (13) | 0.0063 (13) |
| C11 | 0.0753 (18) | 0.0454 (14) | 0.0697 (18) | −0.0022 (13) | 0.0083 (15) | 0.0039 (13) |
| C12 | 0.106 (2) | 0.0497 (16) | 0.073 (2) | −0.0010 (16) | 0.0002 (17) | 0.0056 (15) |
| C13 | 0.085 (2) | 0.076 (2) | 0.0684 (19) | 0.0057 (17) | −0.0101 (16) | −0.0089 (16) |
| O1—C3 | 1.225 (3) | C5—H5D | 0.9600 |
| O2—C8 | 1.364 (3) | C5—H5E | 0.9600 |
| O2—C12 | 1.428 (3) | C5—H5F | 0.9600 |
| O3—C9 | 1.360 (3) | C6—C11 | 1.382 (4) |
| O3—C13 | 1.429 (3) | C6—C7 | 1.401 (4) |
| N1—C1 | 1.135 (4) | C7—C8 | 1.379 (3) |
| N2—C3 | 1.339 (3) | C7—H7 | 0.9300 |
| N2—N3 | 1.376 (3) | C8—C9 | 1.412 (3) |
| N2—H2 | 0.8600 | C9—C10 | 1.367 (4) |
| N3—C4 | 1.280 (3) | C10—C11 | 1.390 (4) |
| C1—C2 | 1.443 (4) | C10—H10 | 0.9300 |
| C2—C3 | 1.517 (4) | C11—H11 | 0.9300 |
| C2—H2A | 0.9700 | C12—H12A | 0.9600 |
| C2—H2B | 0.9700 | C12—H12B | 0.9600 |
| C4—C6 | 1.480 (3) | C12—H12C | 0.9600 |
| C4—C5 | 1.504 (4) | C13—H13A | 0.9600 |
| C5—H5A | 0.9600 | C13—H13B | 0.9600 |
| C5—H5B | 0.9600 | C13—H13C | 0.9600 |
| C5—H5C | 0.9600 | ||
| C8—O2—C12 | 116.9 (2) | H5A—C5—H5F | 56.3 |
| C9—O3—C13 | 116.3 (2) | H5B—C5—H5F | 56.3 |
| C3—N2—N3 | 119.0 (2) | H5C—C5—H5F | 141.1 |
| C3—N2—H2 | 120.5 | H5D—C5—H5F | 109.5 |
| N3—N2—H2 | 120.5 | H5E—C5—H5F | 109.5 |
| C4—N3—N2 | 118.6 (2) | C11—C6—C7 | 117.7 (2) |
| N1—C1—C2 | 177.2 (4) | C11—C6—C4 | 121.9 (2) |
| C1—C2—C3 | 112.0 (2) | C7—C6—C4 | 120.4 (2) |
| C1—C2—H2A | 109.2 | C8—C7—C6 | 121.5 (2) |
| C3—C2—H2A | 109.2 | C8—C7—H7 | 119.2 |
| C1—C2—H2B | 109.2 | C6—C7—H7 | 119.2 |
| C3—C2—H2B | 109.2 | O2—C8—C7 | 124.7 (2) |
| H2A—C2—H2B | 107.9 | O2—C8—C9 | 115.8 (2) |
| O1—C3—N2 | 122.3 (3) | C7—C8—C9 | 119.5 (2) |
| O1—C3—C2 | 122.0 (2) | O3—C9—C10 | 124.7 (2) |
| N2—C3—C2 | 115.7 (2) | O3—C9—C8 | 116.1 (2) |
| N3—C4—C6 | 115.8 (2) | C10—C9—C8 | 119.2 (2) |
| N3—C4—C5 | 124.7 (2) | C9—C10—C11 | 120.6 (2) |
| C6—C4—C5 | 119.5 (2) | C9—C10—H10 | 119.7 |
| C4—C5—H5A | 109.5 | C11—C10—H10 | 119.7 |
| C4—C5—H5B | 109.5 | C6—C11—C10 | 121.5 (2) |
| H5A—C5—H5B | 109.5 | C6—C11—H11 | 119.3 |
| C4—C5—H5C | 109.5 | C10—C11—H11 | 119.3 |
| H5A—C5—H5C | 109.5 | O2—C12—H12A | 109.5 |
| H5B—C5—H5C | 109.5 | O2—C12—H12B | 109.5 |
| C4—C5—H5D | 109.5 | H12A—C12—H12B | 109.5 |
| H5A—C5—H5D | 141.1 | O2—C12—H12C | 109.5 |
| H5B—C5—H5D | 56.3 | H12A—C12—H12C | 109.5 |
| H5C—C5—H5D | 56.3 | H12B—C12—H12C | 109.5 |
| C4—C5—H5E | 109.5 | O3—C13—H13A | 109.5 |
| H5A—C5—H5E | 56.3 | O3—C13—H13B | 109.5 |
| H5B—C5—H5E | 141.1 | H13A—C13—H13B | 109.5 |
| H5C—C5—H5E | 56.3 | O3—C13—H13C | 109.5 |
| H5D—C5—H5E | 109.5 | H13A—C13—H13C | 109.5 |
| C4—C5—H5F | 109.5 | H13B—C13—H13C | 109.5 |
| C3—N2—N3—C4 | −176.4 (2) | C12—O2—C8—C9 | 174.9 (2) |
| N3—N2—C3—O1 | 179.3 (3) | C6—C7—C8—O2 | −179.6 (3) |
| N3—N2—C3—C2 | −0.9 (4) | C6—C7—C8—C9 | 1.3 (4) |
| C1—C2—C3—O1 | −2.4 (4) | C13—O3—C9—C10 | 7.8 (4) |
| C1—C2—C3—N2 | 177.8 (2) | C13—O3—C9—C8 | −172.6 (2) |
| N2—N3—C4—C6 | −179.9 (2) | O2—C8—C9—O3 | −0.9 (3) |
| N2—N3—C4—C5 | 1.3 (4) | C7—C8—C9—O3 | 178.2 (2) |
| N3—C4—C6—C11 | 174.5 (3) | O2—C8—C9—C10 | 178.7 (2) |
| C5—C4—C6—C11 | −6.7 (4) | C7—C8—C9—C10 | −2.1 (4) |
| N3—C4—C6—C7 | −5.8 (4) | O3—C9—C10—C11 | −178.5 (2) |
| C5—C4—C6—C7 | 173.0 (3) | C8—C9—C10—C11 | 1.9 (4) |
| C11—C6—C7—C8 | −0.4 (4) | C7—C6—C11—C10 | 0.1 (4) |
| C4—C6—C7—C8 | 180.0 (2) | C4—C6—C11—C10 | 179.8 (2) |
| C12—O2—C8—C7 | −4.2 (4) | C9—C10—C11—C6 | −0.9 (4) |
| Cg is the centroid of the benzene ring (C6–C11). |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C5—H5A···N2 | 0.96 | 2.38 | 2.796 (4) | 105 |
| C7—H7···N3 | 0.93 | 2.44 | 2.749 (3) | 100 |
| N2—H2···O1i | 0.86 | 2.14 | 2.982 (3) | 166 |
| C5—H5A···O1i | 0.96 | 2.33 | 3.252 (4) | 160 |
| C5—H5E···O2ii | 0.96 | 2.59 | 3.436 (4) | 147 |
| C13—H13B···Cgiii | 0.97 | 2.86 | 3.569 (4) | 132 |
| Symmetry codes: (i) −x+1, −y+1, −z; (ii) x, −y+3/2, z−1/2; (iii) x, −y+3/2, z+1/2. |
Footnotes
‡Additional correspondence author, e-mail: [email protected].
Acknowledgements
The authors thank the Single Crystal XRD Facility at VIT, Vellore, Tamil Nadu, India, for providing the instrumentation and support necessary for this study.
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