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ISSN: 2414-3146

2-Cyano-N′-[(1E)-1-(3,4-di­meth­­oxy­phen­yl)ethyl­idene]acetohydrazide

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aDepartment of Chemistry, Annamalai University, Annamalainagar, Chidambaram 608 002, India, and bPG & Research Department of Physics, Government Arts College, Melur 625 106, India
*Correspondence e-mail: [email protected]

Edited by M. Weil, Vienna University of Technology, Austria (Received 18 December 2025; accepted 28 January 2026; online 5 February 2026)

The non-H part of the mol­ecule of the title compound, C13H15N3O3, is nearly planar, with the 2-cyano-N′-[(1E)-ethyl­idene]acetohydrazide moiety and the dimeth­oxy phenol ring forming a dihedral angle of 2.5 (1)°. Inter­molecular N—H⋯O, C—H⋯O and C—H⋯π inter­actions are mainly responsible for the cohesion within the crystal structure. The inter­molecular inter­actions were qu­anti­fied and analysed using Hirshfeld surface analysis, revealing that H⋯H inter­actions contribute most to the crystal packing (36.9%). The volume of the crystal voids was calculated to be 167.8 Å3 (13% of the unit-cell volume).

3D view (loading...)
[Scheme 3D1]
Chemical scheme
[Scheme 1]

Structure description

Hydrazone derivatives have long been valued in medicinal and organic chemistry because they are easy to prepare, structurally flexible, and capable of exhibiting a wide range of biological activities. Within this class, acyl hydrazones and heterocycle-linked hydrazones are especially notable, as many of them display anti­diabetic, anti­cancer, anti­microbial, anti­oxidant, and anti-inflammatory properties (Punitha et al., 2020View full citation). In the present work, the title compound, (I), was chosen due to the particular ombination of functional groups that are known to enhance biological effectiveness. The hydrazone unit (–C=N–NH–) provides an extended- conjugated system that supports strong inter­molecular inter­actions and can promote favourable binding within enzyme active sites. The 3,4-di­meth­oxy­phenyl ring adds lipophilicity, encouraging ππ stacking and improving membrane permeability, which together may enhance pharmacological performance. The cyano (–C≡N) group, being a strong electron-withdrawing substit­uent, fine-tunes the electronic character of the mol­ecule, increases hydrogen-bond acceptor strength, and is often associated with improved anti­microbial and anti­cancer effects (Senthilkumar et al., 2021View full citation; Maheswari et al., 2025View full citation). The coexistence of electron-donating meth­oxy groups and an electron-withdrawing cyano group creates an inter­nal charge-transfer environment, a feature commonly linked to stronger biological responses in hydrazone frameworks. Because of this combination of structural and electronic attributes, the selected compound offers enhanced biological activity, making it a promising candidate for further pharmacological development (Senthilkumar et al., 2020View full citation).

The mol­ecular structure of (I) is displayed in Fig. 1[link]. The phenyl ring (C6–C11) is planar with a maximum deviation of 0.010 (3) Å for atom C9, and its attached meth­oxy atoms O2, C12, O3 and C13 deviate by −0.015 (2), 0.075 (4), 0.036 (2) and 0.218 (4) Å, respectively. The 2-cyano-N′-[(1E)-ethyl­idene]acetohydrazide moiety (N1/C1/C2/C3/O1/N2/N3/C4/C5) is nearly planar with a maximum deviation of 0.120 (4) Å for atom C5. This moiety forms a dihedral angle of 2.5 (1)° with the dimeth­oxy phenyl ring. Weak intra­molecular C5—H5A⋯N2 and C7—H7⋯N3 contacts, forming two S(5) ring motifs (Bernstein et al., 1995View full citation) may help to establish the solid-state conformation (Table 1[link], Fig. 1[link]).

Table 1
Hydrogen-bond geometry (Å, °)

Cg is the centroid of the benzene ring (C6–C11).

D—H⋯A D—H H⋯A DA D—H⋯A
C5—H5A⋯N2 0.96 2.38 2.796 (4) 105
C7—H7⋯N3 0.93 2.44 2.749 (3) 100
N2—H2⋯O1i 0.86 2.14 2.982 (3) 166
C5—H5A⋯O1i 0.96 2.33 3.252 (4) 160
C5—H5E⋯O2ii 0.96 2.59 3.436 (4) 147
C13—H13BCgiii 0.97 2.86 3.569 (4) 132
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation.
[Figure 1]
Figure 1
Mol­ecular structure of (I) showing the atom-labelling scheme and the intra­molecular hydrogen bonds (dashed lines). Displacement ellipsoids are drawn at the 50% probability level. Only one part of the disordered methyl group at C5 is shown.

In the crystal, mol­ecules associate pairwise through N2—H2⋯O1i and C5—H5A⋯O1i hydrogen bonds (Table 1[link]) into inversion dimers with R22(8) and R22(14) graph-set motifs (Etter et al., 1990View full citation; Bernstein et al., 1995View full citation), as shown in Fig. 2[link]. The mol­ecules are linked into a C(7) chain motif by C5—H5E⋯O2ii hydrogen bonds running parallel to [001] (Table 1[link], Fig. 3[link]). Moreover, mol­ecules are further linked along the same direction into a C(5) chain motif by C—H⋯π inter­actions, C13—H13B⋯Cg, where Cg is the centroid of the symmetry-related C6–C11 benzene ring at (x, −y + Mathematical equation, z + Mathematical equation) (Table 1[link], Fig. 4[link]).

[Figure 2]
Figure 2
The formation of a centrosymmetric dimer in the crystal structure of (I) through N—H⋯O and C—H⋯O hydrogen bonds. [Symmetry code: (a) −x + 1, −y + 1, −z].
[Figure 3]
Figure 3
The crystal packing of compound (I) viewed along the b axis. The C—H⋯O hydrogen bonds are shown as dashed lines. For clarity, H atoms not involved in hydrogen bonds have been omitted.
[Figure 4]
Figure 4
The crystal packing of (I). C—H⋯π inter­actions are shown as dashed lines. For clarity, H atoms not involved in these inter­actions have been omitted.

In order to further characterize and qu­antify the inter­molecular inter­actions in the title compound, a Hirshfeld surface (HS) analysis (Spackman & Jayatilaka, 2009View full citation) was carried out using CrystalExplorer (Spackman et al., 2021View full citation). The HS mapped over dnorm is illustrated in Fig. 5[link] where the deep-red spots indicative of strong inter­actions occur at O1, H2 and H5A, and these atoms are responsible for inter­molecular N—H⋯O and C—H⋯O hydrogen bonds discussed above.

[Figure 5]
Figure 5
A view of the Hirshfeld surface mapped over dnorm for compound (I).

The associated two-dimensional fingerprint plots (McKinnon et al., 2007View full citation) provide qu­anti­tative information about the non-covalent inter­actions in the crystal packing in terms of the percentage contribution of the inter­atomic contacts (Spackman & McKinnon, 2002View full citation). As shown in Fig. 6[link], the overall two-dimensional fingerprint plot for compound (I) is delineated into the different contact types, revealing that H⋯H (36.9%) and H⋯O/O⋯H (22.2%) are the main contributors to the crystal packing.

[Figure 6]
Figure 6
Two-dimensional fingerprint plots for compound (I), showing (a) all inter­actions, and delineated into (b) H⋯H, (c) H⋯O/O⋯H, (d) H⋯C/C⋯H, (e) H⋯N/N⋯H, (f) N⋯C/C⋯N, (g) N⋯N and (h) O⋯C/C⋯O inter­actions. The di and de values are the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surface.

A void analysis was performed by adding up the electron densities of the spherically symmetric atoms contained in the asymmetric unit (Turner et al., 2011View full citation). The void surface is defined as an isosurface of the procrystal electron density and is calculated for the whole unit cell where the void surface meets the boundary of the unit cell and capping faces are generated to create an enclosed volume. The volume of the crystal voids (Fig. 7[link]) was calculated to be 168 Å3 (13% of the unit-cell volume). Fig. 7[link](b) also reveals that individual mol­ecules are arranged in layers parallel to (10Mathematical equation).

[Figure 7]
Figure 7
Graphical views of voids in the crystal packing of compound (I) viewed down the (a) a-axis and (b) b-axis directions.

Synthesis and crystallization

Compound (I) was prepared through a condensation reaction involving an equimolar ratio of 2-cyano­acetohydrazide (0.05 mol) and 3,4-di­meth­oxy­aceto­phenone (0.05 mol). The reagents were placed into a clean reaction flask where methanol served as the reaction medium. A few drops of glacial acetic acid were added to promote the formation of the hydrazone bond. The mixture was then heated under reflux for about 6–8 h. Throughout this period, the progress of the reaction was checked at inter­vals using thin-layer chromatography (TLC) to confirm that the starting materials were being fully consumed. Once the reaction reached completion, the mixture was allowed to cool gradually to room temperature, during which a solid product began to separate out. The resulting precipitate was collected by filtration, thoroughly washed to remove any remaining impurities, and dried under reduced pressure to eliminate traces of solvent. Final purification was achieved by recrystallizing the crude product from warm ethanol solution, affording the desired hydrazone derivative with 75% yield.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. The methyl hydrogen atoms at C5 were refined as equally disordered (using an AFIX 127 instruction with SHELXL; Sheldrick, 2015bView full citation) with C—H = 0.98 Å.

Table 2
Experimental details

Crystal data
Chemical formula C13H15N3O3
Mr 261.28
Crystal system, space group Monoclinic, P21/c
Temperature (K) 300
a, b, c (Å) 11.2308 (13), 11.7792 (13), 10.3668 (12)
β (°) 102.692 (4)
V3) 1337.9 (3)
Z 4
Radiation type Mo Kα
μ (mm−1) 0.09
Crystal size (mm) 0.46 × 0.12 × 0.06
 
Data collection
Diffractometer Bruker APEXII CCD
Absorption correction Multi-scan (SADABS; Krause et al., 2015View full citation)
Tmin, Tmax 0.672, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 25559, 3317, 1510
Rint 0.064
(sin θ/λ)max−1) 0.667
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.067, 0.239, 1.04
No. of reflections 3317
No. of parameters 174
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.34, −0.18
Computer programs: APEX3 and SAINT (Bruker, 2017View full citation), SHELXT (Sheldrick, 2015aView full citation), ORTEP-3 for Windows (Farrugia, 2012View full citation), PLATON (Spek, 2020View full citation) and SHELXL (Sheldrick, 2015bView full citation).

Structural data


Computing details top

2-Cyano-N'-[(1E)-1-(3,4-dimethoxyphenyl)ethylidene]acetohydrazide top
Crystal data top
C13H15N3O3F(000) = 552
Mr = 261.28Dx = 1.297 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 11.2308 (13) ÅCell parameters from 5190 reflections
b = 11.7792 (13) Åθ = 2.5–24.4°
c = 10.3668 (12) ŵ = 0.09 mm1
β = 102.692 (4)°T = 300 K
V = 1337.9 (3) Å3Plate, colourless
Z = 40.46 × 0.12 × 0.06 mm
Data collection top
Bruker APEXII CCD
diffractometer
1510 reflections with I > 2σ(I)
Radiation source: i-mu-s microfocus sourceRint = 0.064
φ and ω scansθmax = 28.3°, θmin = 1.9°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 1414
Tmin = 0.672, Tmax = 0.746k = 1515
25559 measured reflectionsl = 1313
3317 independent reflections
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.067 w = 1/[σ2(Fo2) + (0.1011P)2 + 0.4583P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.239(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.34 e Å3
3317 reflectionsΔρmin = 0.18 e Å3
174 parametersExtinction correction: SHELXL (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.008 (3)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
O10.4532 (2)0.63384 (18)0.0687 (2)0.0873 (8)
O20.87019 (19)0.96378 (15)0.55091 (18)0.0716 (6)
O31.00787 (18)0.85504 (16)0.74705 (17)0.0680 (6)
N10.3940 (3)0.9169 (3)0.1399 (4)0.1051 (11)
N20.5860 (2)0.61306 (19)0.1263 (2)0.0626 (7)
H20.5858270.5402430.1202800.075*
N30.65690 (19)0.66651 (18)0.2344 (2)0.0590 (6)
C10.4510 (3)0.8648 (3)0.0567 (3)0.0750 (9)
C20.5239 (3)0.8034 (2)0.0532 (3)0.0680 (8)
H2A0.4955560.8209800.1328300.082*
H2B0.6081610.8279320.0665270.082*
C30.5174 (2)0.6761 (2)0.0306 (3)0.0629 (7)
C40.7271 (2)0.6060 (2)0.3220 (3)0.0554 (7)
C50.7404 (3)0.4793 (2)0.3148 (3)0.0791 (9)
H5A0.6968000.4527060.2299830.119*0.5
H5B0.7077040.4441130.3830420.119*0.5
H5C0.8252180.4601730.3266940.119*0.5
H5D0.7896820.4519550.3964970.119*0.5
H5E0.7787770.4605480.2434370.119*0.5
H5F0.6612630.4444890.2997850.119*0.5
C60.8006 (2)0.6688 (2)0.4357 (2)0.0544 (7)
C70.7997 (2)0.7877 (2)0.4374 (3)0.0557 (7)
H70.7523550.8267570.3663290.067*
C80.8673 (2)0.8482 (2)0.5422 (2)0.0544 (7)
C90.9413 (2)0.7895 (2)0.6492 (2)0.0548 (7)
C100.9413 (3)0.6734 (2)0.6487 (3)0.0627 (7)
H100.9879590.6341480.7200090.075*
C110.8724 (3)0.6137 (2)0.5426 (3)0.0646 (8)
H110.8746240.5347440.5436170.078*
C120.8042 (3)1.0254 (2)0.4392 (3)0.0795 (9)
H12A0.8128651.1053550.4566100.119*
H12B0.8360551.0071860.3630090.119*
H12C0.7194831.0050240.4229150.119*
C131.0939 (3)0.7968 (3)0.8472 (3)0.0808 (10)
H13A1.1356750.8506150.9108950.121*
H13B1.0518780.7427400.8902910.121*
H13C1.1520760.7580020.8075900.121*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0962 (16)0.0556 (12)0.0888 (15)0.0086 (11)0.0261 (13)0.0013 (11)
O20.0960 (14)0.0461 (11)0.0650 (12)0.0002 (10)0.0014 (10)0.0039 (9)
O30.0821 (13)0.0586 (11)0.0568 (11)0.0016 (10)0.0011 (10)0.0062 (9)
N10.102 (2)0.081 (2)0.118 (3)0.0087 (18)0.006 (2)0.0182 (19)
N20.0645 (14)0.0452 (12)0.0703 (15)0.0035 (10)0.0021 (12)0.0056 (11)
N30.0589 (13)0.0472 (12)0.0648 (14)0.0062 (10)0.0006 (11)0.0067 (11)
C10.0699 (19)0.0540 (17)0.095 (2)0.0030 (15)0.0049 (18)0.0030 (17)
C20.0673 (17)0.0479 (15)0.082 (2)0.0003 (13)0.0028 (15)0.0026 (14)
C30.0587 (16)0.0524 (15)0.0709 (18)0.0058 (13)0.0004 (14)0.0005 (14)
C40.0586 (15)0.0477 (14)0.0603 (16)0.0027 (12)0.0136 (13)0.0004 (12)
C50.100 (2)0.0519 (17)0.075 (2)0.0004 (16)0.0025 (17)0.0036 (15)
C60.0588 (15)0.0478 (14)0.0558 (15)0.0019 (12)0.0108 (12)0.0000 (12)
C70.0621 (16)0.0491 (14)0.0553 (15)0.0007 (12)0.0113 (13)0.0010 (12)
C80.0614 (15)0.0480 (14)0.0534 (15)0.0002 (12)0.0115 (12)0.0005 (12)
C90.0592 (15)0.0549 (15)0.0494 (14)0.0010 (12)0.0103 (12)0.0049 (12)
C100.0705 (17)0.0559 (16)0.0566 (16)0.0007 (13)0.0032 (13)0.0063 (13)
C110.0753 (18)0.0454 (14)0.0697 (18)0.0022 (13)0.0083 (15)0.0039 (13)
C120.106 (2)0.0497 (16)0.073 (2)0.0010 (16)0.0002 (17)0.0056 (15)
C130.085 (2)0.076 (2)0.0684 (19)0.0057 (17)0.0101 (16)0.0089 (16)
Geometric parameters (Å, º) top
O1—C31.225 (3)C5—H5D0.9600
O2—C81.364 (3)C5—H5E0.9600
O2—C121.428 (3)C5—H5F0.9600
O3—C91.360 (3)C6—C111.382 (4)
O3—C131.429 (3)C6—C71.401 (4)
N1—C11.135 (4)C7—C81.379 (3)
N2—C31.339 (3)C7—H70.9300
N2—N31.376 (3)C8—C91.412 (3)
N2—H20.8600C9—C101.367 (4)
N3—C41.280 (3)C10—C111.390 (4)
C1—C21.443 (4)C10—H100.9300
C2—C31.517 (4)C11—H110.9300
C2—H2A0.9700C12—H12A0.9600
C2—H2B0.9700C12—H12B0.9600
C4—C61.480 (3)C12—H12C0.9600
C4—C51.504 (4)C13—H13A0.9600
C5—H5A0.9600C13—H13B0.9600
C5—H5B0.9600C13—H13C0.9600
C5—H5C0.9600
C8—O2—C12116.9 (2)H5A—C5—H5F56.3
C9—O3—C13116.3 (2)H5B—C5—H5F56.3
C3—N2—N3119.0 (2)H5C—C5—H5F141.1
C3—N2—H2120.5H5D—C5—H5F109.5
N3—N2—H2120.5H5E—C5—H5F109.5
C4—N3—N2118.6 (2)C11—C6—C7117.7 (2)
N1—C1—C2177.2 (4)C11—C6—C4121.9 (2)
C1—C2—C3112.0 (2)C7—C6—C4120.4 (2)
C1—C2—H2A109.2C8—C7—C6121.5 (2)
C3—C2—H2A109.2C8—C7—H7119.2
C1—C2—H2B109.2C6—C7—H7119.2
C3—C2—H2B109.2O2—C8—C7124.7 (2)
H2A—C2—H2B107.9O2—C8—C9115.8 (2)
O1—C3—N2122.3 (3)C7—C8—C9119.5 (2)
O1—C3—C2122.0 (2)O3—C9—C10124.7 (2)
N2—C3—C2115.7 (2)O3—C9—C8116.1 (2)
N3—C4—C6115.8 (2)C10—C9—C8119.2 (2)
N3—C4—C5124.7 (2)C9—C10—C11120.6 (2)
C6—C4—C5119.5 (2)C9—C10—H10119.7
C4—C5—H5A109.5C11—C10—H10119.7
C4—C5—H5B109.5C6—C11—C10121.5 (2)
H5A—C5—H5B109.5C6—C11—H11119.3
C4—C5—H5C109.5C10—C11—H11119.3
H5A—C5—H5C109.5O2—C12—H12A109.5
H5B—C5—H5C109.5O2—C12—H12B109.5
C4—C5—H5D109.5H12A—C12—H12B109.5
H5A—C5—H5D141.1O2—C12—H12C109.5
H5B—C5—H5D56.3H12A—C12—H12C109.5
H5C—C5—H5D56.3H12B—C12—H12C109.5
C4—C5—H5E109.5O3—C13—H13A109.5
H5A—C5—H5E56.3O3—C13—H13B109.5
H5B—C5—H5E141.1H13A—C13—H13B109.5
H5C—C5—H5E56.3O3—C13—H13C109.5
H5D—C5—H5E109.5H13A—C13—H13C109.5
C4—C5—H5F109.5H13B—C13—H13C109.5
C3—N2—N3—C4176.4 (2)C12—O2—C8—C9174.9 (2)
N3—N2—C3—O1179.3 (3)C6—C7—C8—O2179.6 (3)
N3—N2—C3—C20.9 (4)C6—C7—C8—C91.3 (4)
C1—C2—C3—O12.4 (4)C13—O3—C9—C107.8 (4)
C1—C2—C3—N2177.8 (2)C13—O3—C9—C8172.6 (2)
N2—N3—C4—C6179.9 (2)O2—C8—C9—O30.9 (3)
N2—N3—C4—C51.3 (4)C7—C8—C9—O3178.2 (2)
N3—C4—C6—C11174.5 (3)O2—C8—C9—C10178.7 (2)
C5—C4—C6—C116.7 (4)C7—C8—C9—C102.1 (4)
N3—C4—C6—C75.8 (4)O3—C9—C10—C11178.5 (2)
C5—C4—C6—C7173.0 (3)C8—C9—C10—C111.9 (4)
C11—C6—C7—C80.4 (4)C7—C6—C11—C100.1 (4)
C4—C6—C7—C8180.0 (2)C4—C6—C11—C10179.8 (2)
C12—O2—C8—C74.2 (4)C9—C10—C11—C60.9 (4)
Hydrogen-bond geometry (Å, º) top
Cg is the centroid of the benzene ring (C6–C11).
D—H···AD—HH···AD···AD—H···A
C5—H5A···N20.962.382.796 (4)105
C7—H7···N30.932.442.749 (3)100
N2—H2···O1i0.862.142.982 (3)166
C5—H5A···O1i0.962.333.252 (4)160
C5—H5E···O2ii0.962.593.436 (4)147
C13—H13B···Cgiii0.972.863.569 (4)132
Symmetry codes: (i) x+1, y+1, z; (ii) x, y+3/2, z1/2; (iii) x, y+3/2, z+1/2.
 

Footnotes

Additional correspondence author, e-mail: [email protected].

Acknowledgements

The authors thank the Single Crystal XRD Facility at VIT, Vellore, Tamil Nadu, India, for providing the instrumentation and support necessary for this study.

References

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