organic compounds
7-Chloro-3-(4-methylbenzenesulfonyl)pyrrolo[1,2-c]pyrimidine
aDepartment of Chemistry, Dartmouth College, Hanover, NH 03755 , USA, and bDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435 , USA
*Correspondence e-mail: Gordon.W.Gribble@dartmouth.edu, jjasinski@keene.edu
In the title compound, C14H11ClN2O2S, the dihedral angle between the pyrrolo[1,2-c]pyrimidine ring system (r.m.s. deviation = 0.008 Å) and the benzene ring is 80.2 (9)°. In the crystal, inversion dimers linked by pairs of C—H⋯O interactions generate R22(16) loops. Several aromatic π–π stacking interactions between the pyrrolo[1,2-c]pyrimidine rings, as well as separately between the pyrrolo and pyrimidine groups [shortest centroid–centroid separation = 3.5758 (14) Å], help to consolidate the packing.
Keywords: crystal structure; weak intermolecular interactions; pyrrolo[1,2-c]pyrimidine and pyrimidine rings; π–π stacking.
CCDC reference: 1990547
Structure description
Pyrrolo[1,2-c]pyrimidines are a class of fused heterocycles of interest for their biological activity, electrochemical properties, and as components of natural products (Tatu et al., 2018). As part of our studies in this area, we now report the of the title compound, C14H11N2O2SCl (Fig. 1). We believe that this is the first to be reported of a pyrrolo[1,2-c]pyrimidine and one of the few unsymmetrical `diaryl to be described.
The dihedral angle between the C1–C7/N1/N2 pyrrolo[1,2-c]pyrimidine ring system (r.m.s. deviation = 0.008 Å) and the C8–C13 benzene ring is 80.2 (9)°. The rings adopt a typical diaryl sulfone `open-book' conformation with respect to the sulfonyl group (Koch & Moffitt, 1951; Sime & Woodhouse, 1974; Bocelli & Rizzoli, 1990; Colquhoun, 1997; Colquhoun et al., 2002; Rudolph et al., 2010; Benhalima et al., 2012). Notably, the torsion angles differ from the ideal 90°. Thus, the torsion angles in the title compound reveal that the p–d π overlap in the benzene ring between C8 and S1 [torsion angle C1—S1—C8—C9 = 105.19 (19)°], is favored over the p–d π overlap in the pyrrolo[1,2-c]pyrimidine ring between C1 and S1 [C8—S1—C1—C2 = 110.70 (18)°], probably because the benzene ring is electron-rich relative to the pyrrolo[1,2-c]pyrimidine ring. Consistent with this notion is the observation that the S1—C8 bond length [1.767 (2) Å] is slightly shorter than S1—C1 [1.773 (2) Å]. The O1—S1—O2 bond angle of 119.68 (11)° agrees with the literature values for diaryl (Sime & Woodhouse, 1974; Colquhoun, 1997; Colquhoun et al., 2002; Rudolph et al., 2010; Benhalima et al., 2012). Likewise, the C1—S1—C8 bond angle of 105.03 (10)° is consistent with the literature data (Sime & Woodhouse, 1974; Bocelli & Rizzoli, 1990; Colquhoun et al., 2002).
In the crystal, a weak C14—H14B⋯O2 hydrogen bond (Table 1) links two molecules together in a ring face–ring face arrangement (Fig. 2). This packing motif was also observed by Sime & Woodhouse (1974) in the of diphenyl sulfone and by Colquhoun et al. (2002) in the of poly(1,4-phenylenesulfone). Several aromatic π–π stacking interactions between the pyrrolo[1,2-c]pyrimidine rings as well as separately between the pyrrolo and pyrimidine groups (Table 2) are observed and help to consolidate the packing.
Synthesis and crystallization
A stirred solution of 5-chloropyrrole-2-carbaldehyde (Leen et al., 2011) (0.023 g, 0.18 mmol) in dioxane (10 ml) was cooled in an ice bath and toluenesulfonylmethyl isocyanide (TosMIC) (0.046 g, 0.26 mmol) and 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (0.04 ml) were added. The solution was then stirred for 20 h at 52°C. The reaction was quenched with 1M hydrochloric acid (25 ml) and extracted with ethyl acetate (50 ml). The organic layer was washed once each with 1 M hydrochloric acid (20 ml), saturated aqueous sodium bicarbonate solution (20 ml), and brine (20 ml). The organic layer was dried over anhydrous sodium sulfate, filtered over glass wool and concentrated in vacuo. The resulting crude product was purified by flash using 6:1 hexane:ethyl acetate. Evaporation of the solvent afforded 0.036 g (66%) of 7-chloro-3-tosylpyrrolo[1,2-c]pyrimidine as a light-yellow solid: mp 181–184°C; 1H NMR (500 MHz, CDCl3) δ 8.77 (s, 1H), 8.24 (d, J = 1 Hz, 1H), 7.95 (d, J = 8 Hz, 2H), 7.33 (d, J = 8 Hz, 2H), 6.92 (d, J = 4 Hz, 1H), 6.84 (d, J = 4 Hz, 1H), 2.42 (s, 3H); 13C NMR (500 MHz, CDCl3) δ 144.8, 141.2, 136.4, 135.9, 130.0, 129.60, 128.9, 116.9, 115.0, 110.7, 106.2, 21.8; HRMS m/z calculated for C14H12N2O2SCl: 307.0308, found: 307.0303. Colorless prisms suitable for X-ray determination were recrystallized from ethanol solution. The reaction scheme is shown in Fig. 3.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 3
|
Structural data
CCDC reference: 1990547
https://doi.org/10.1107/S241431462000382X/hb4342sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S241431462000382X/hb4342Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S241431462000382X/hb4342Isup3.cml
Data collection: CrysAlis PRO (Rigaku OD, 2019); cell
CrysAlis PRO (Rigaku OD, 2019); data reduction: CrysAlis PRO (Rigaku OD, 2019); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).C14H11ClN2O2S | Z = 2 |
Mr = 306.76 | F(000) = 316 |
Triclinic, P1 | Dx = 1.535 Mg m−3 |
a = 7.2285 (5) Å | Cu Kα radiation, λ = 1.54184 Å |
b = 7.2385 (5) Å | Cell parameters from 1885 reflections |
c = 13.7586 (11) Å | θ = 6.5–71.4° |
α = 102.192 (7)° | µ = 4.05 mm−1 |
β = 99.616 (6)° | T = 173 K |
γ = 104.149 (6)° | Prism, colourless |
V = 663.91 (9) Å3 | 0.16 × 0.13 × 0.08 mm |
Rigaku-Oxford Diffraction Eos, Gemini diffractometer | 2498 independent reflections |
Radiation source: fine-focus sealed X-ray tube | 2177 reflections with I > 2σ(I) |
Detector resolution: 16.0416 pixels mm-1 | Rint = 0.036 |
ω scans | θmax = 71.2°, θmin = 3.4° |
Absorption correction: multi-scan | h = −5→8 |
Tmin = 0.748, Tmax = 1.000 | k = −8→8 |
3839 measured reflections | l = −16→16 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0554P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.114 | (Δ/σ)max < 0.001 |
S = 1.04 | Δρmax = 0.53 e Å−3 |
2498 reflections | Δρmin = −0.31 e Å−3 |
183 parameters | Extinction correction: SHELXL-2018/1 (Sheldrick 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0018 (6) |
Primary atom site location: dual |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. All of the H atoms were placed in their calculated positions and then refined with atom-H lengths of 0.93 Å (CH); 0.96 Å (CH3) using the riding model with Uiso (H) = 1.2 (CH) or 1.5 times Ueq (CH3) of the parent atom. The idealized methyl group was refined as a rotating group. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.01870 (9) | 0.02376 (9) | 0.27155 (4) | 0.03578 (19) | |
S1 | 0.40553 (8) | 0.62315 (7) | 0.76558 (4) | 0.02404 (18) | |
O1 | 0.5458 (3) | 0.7802 (2) | 0.74516 (13) | 0.0334 (4) | |
O2 | 0.2700 (3) | 0.6692 (3) | 0.82618 (13) | 0.0340 (4) | |
N1 | 0.3648 (3) | 0.4137 (3) | 0.57537 (14) | 0.0250 (4) | |
N2 | 0.0639 (3) | 0.2272 (3) | 0.46404 (13) | 0.0216 (4) | |
C1 | 0.2605 (3) | 0.4612 (3) | 0.64732 (16) | 0.0221 (4) | |
C2 | 0.0627 (3) | 0.3971 (3) | 0.63311 (16) | 0.0231 (4) | |
H2 | 0.001144 | 0.434521 | 0.685034 | 0.028* | |
C3 | −0.0462 (3) | 0.2721 (3) | 0.53723 (17) | 0.0228 (4) | |
C4 | −0.2410 (3) | 0.1749 (3) | 0.49171 (18) | 0.0282 (5) | |
H4 | −0.346453 | 0.178047 | 0.521972 | 0.034* | |
C5 | −0.2517 (3) | 0.0705 (3) | 0.39148 (18) | 0.0289 (5) | |
H5 | −0.365477 | −0.008063 | 0.343710 | 0.035* | |
C6 | −0.0663 (3) | 0.1047 (3) | 0.37665 (16) | 0.0257 (5) | |
C7 | 0.2645 (3) | 0.3009 (3) | 0.48672 (16) | 0.0235 (4) | |
H7 | 0.331004 | 0.268421 | 0.436325 | 0.028* | |
C8 | 0.5354 (3) | 0.4809 (3) | 0.82241 (16) | 0.0253 (4) | |
C9 | 0.7327 (4) | 0.5134 (3) | 0.82356 (17) | 0.0293 (5) | |
H9 | 0.796540 | 0.608266 | 0.794615 | 0.035* | |
C10 | 0.8339 (4) | 0.4003 (4) | 0.86927 (19) | 0.0316 (5) | |
H10 | 0.966752 | 0.421378 | 0.871207 | 0.038* | |
C11 | 0.7390 (4) | 0.2571 (3) | 0.91184 (16) | 0.0269 (5) | |
C12 | 0.5414 (4) | 0.2299 (4) | 0.90997 (19) | 0.0331 (5) | |
H12 | 0.476588 | 0.134692 | 0.938446 | 0.040* | |
C13 | 0.4392 (4) | 0.3421 (4) | 0.86641 (19) | 0.0326 (5) | |
H13 | 0.307487 | 0.324508 | 0.866706 | 0.039* | |
C14 | 0.8477 (4) | 0.1336 (4) | 0.95979 (18) | 0.0335 (5) | |
H14A | 0.794694 | −0.002190 | 0.921296 | 0.050* | |
H14B | 0.833361 | 0.145628 | 1.028789 | 0.050* | |
H14C | 0.984104 | 0.178670 | 0.959859 | 0.050* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0431 (4) | 0.0340 (3) | 0.0238 (3) | 0.0029 (2) | 0.0081 (2) | 0.0033 (2) |
S1 | 0.0260 (3) | 0.0219 (3) | 0.0216 (3) | 0.0068 (2) | 0.0011 (2) | 0.00387 (19) |
O1 | 0.0329 (9) | 0.0238 (8) | 0.0372 (9) | 0.0025 (7) | −0.0034 (7) | 0.0107 (7) |
O2 | 0.0357 (9) | 0.0376 (9) | 0.0269 (8) | 0.0160 (7) | 0.0033 (7) | 0.0016 (7) |
N1 | 0.0239 (9) | 0.0272 (9) | 0.0235 (9) | 0.0050 (7) | 0.0050 (7) | 0.0091 (7) |
N2 | 0.0240 (9) | 0.0212 (8) | 0.0200 (8) | 0.0054 (7) | 0.0031 (7) | 0.0089 (7) |
C1 | 0.0240 (10) | 0.0209 (10) | 0.0214 (10) | 0.0054 (8) | 0.0040 (8) | 0.0080 (8) |
C2 | 0.0271 (11) | 0.0234 (10) | 0.0228 (10) | 0.0108 (8) | 0.0080 (8) | 0.0090 (8) |
C3 | 0.0220 (10) | 0.0247 (10) | 0.0263 (10) | 0.0093 (8) | 0.0067 (8) | 0.0124 (8) |
C4 | 0.0207 (10) | 0.0310 (12) | 0.0338 (12) | 0.0076 (9) | 0.0030 (9) | 0.0128 (9) |
C5 | 0.0276 (11) | 0.0257 (11) | 0.0302 (11) | 0.0044 (9) | −0.0018 (9) | 0.0109 (9) |
C6 | 0.0309 (11) | 0.0210 (10) | 0.0230 (10) | 0.0050 (8) | 0.0021 (9) | 0.0070 (8) |
C7 | 0.0230 (10) | 0.0236 (10) | 0.0244 (10) | 0.0056 (8) | 0.0069 (8) | 0.0077 (8) |
C8 | 0.0275 (11) | 0.0241 (10) | 0.0216 (10) | 0.0063 (8) | −0.0004 (8) | 0.0065 (8) |
C9 | 0.0342 (12) | 0.0299 (11) | 0.0278 (11) | 0.0096 (9) | 0.0111 (9) | 0.0124 (9) |
C10 | 0.0262 (11) | 0.0391 (13) | 0.0331 (11) | 0.0120 (10) | 0.0091 (9) | 0.0124 (10) |
C11 | 0.0331 (12) | 0.0260 (11) | 0.0193 (9) | 0.0095 (9) | 0.0011 (8) | 0.0038 (8) |
C12 | 0.0322 (12) | 0.0326 (12) | 0.0360 (12) | 0.0064 (10) | 0.0074 (10) | 0.0161 (10) |
C13 | 0.0248 (11) | 0.0350 (12) | 0.0375 (12) | 0.0047 (9) | 0.0054 (9) | 0.0145 (10) |
C14 | 0.0435 (14) | 0.0328 (12) | 0.0275 (11) | 0.0179 (11) | 0.0058 (10) | 0.0088 (9) |
Cl1—C6 | 1.711 (2) | C2—C3 | 1.407 (3) |
S1—O1 | 1.4370 (18) | C3—C4 | 1.380 (3) |
S1—O2 | 1.4429 (18) | C4—C5 | 1.405 (3) |
S1—C1 | 1.773 (2) | C5—C6 | 1.360 (3) |
S1—C8 | 1.767 (2) | C8—C9 | 1.384 (3) |
N1—C1 | 1.378 (3) | C8—C13 | 1.384 (3) |
N1—C7 | 1.294 (3) | C9—C10 | 1.399 (3) |
N2—C3 | 1.417 (3) | C10—C11 | 1.390 (3) |
N2—C6 | 1.371 (3) | C11—C12 | 1.389 (4) |
N2—C7 | 1.373 (3) | C11—C14 | 1.507 (3) |
C1—C2 | 1.358 (3) | C12—C13 | 1.384 (4) |
O1—S1—O2 | 119.68 (11) | C3—C4—C5 | 107.8 (2) |
O1—S1—C1 | 108.51 (10) | C6—C5—C4 | 108.0 (2) |
O1—S1—C8 | 107.90 (11) | N2—C6—Cl1 | 119.51 (18) |
O2—S1—C1 | 106.24 (11) | C5—C6—Cl1 | 130.89 (18) |
O2—S1—C8 | 108.56 (11) | C5—C6—N2 | 109.6 (2) |
C8—S1—C1 | 105.03 (10) | N1—C7—N2 | 122.67 (19) |
C7—N1—C1 | 116.87 (19) | C9—C8—S1 | 119.13 (17) |
C6—N2—C3 | 107.32 (18) | C13—C8—S1 | 119.48 (18) |
C6—N2—C7 | 131.24 (19) | C13—C8—C9 | 121.4 (2) |
C7—N2—C3 | 121.44 (18) | C8—C9—C10 | 118.5 (2) |
N1—C1—S1 | 114.68 (16) | C11—C10—C9 | 121.1 (2) |
C2—C1—S1 | 119.95 (16) | C10—C11—C14 | 121.0 (2) |
C2—C1—N1 | 125.37 (19) | C12—C11—C10 | 118.8 (2) |
C1—C2—C3 | 117.78 (19) | C12—C11—C14 | 120.2 (2) |
C2—C3—N2 | 115.87 (19) | C13—C12—C11 | 121.1 (2) |
C4—C3—N2 | 107.3 (2) | C8—C13—C12 | 119.2 (2) |
C4—C3—C2 | 136.8 (2) | ||
S1—C1—C2—C3 | 178.70 (15) | C3—C4—C5—C6 | −0.2 (3) |
S1—C8—C9—C10 | 179.69 (17) | C4—C5—C6—Cl1 | −179.09 (17) |
S1—C8—C13—C12 | 179.40 (19) | C4—C5—C6—N2 | 0.2 (2) |
O1—S1—C1—N1 | 44.81 (18) | C6—N2—C3—C2 | 179.87 (17) |
O1—S1—C1—C2 | −134.12 (16) | C6—N2—C3—C4 | 0.0 (2) |
O1—S1—C8—C9 | −10.4 (2) | C6—N2—C7—N1 | −178.8 (2) |
O1—S1—C8—C13 | 168.42 (19) | C7—N1—C1—S1 | −177.86 (15) |
O2—S1—C1—N1 | 174.70 (15) | C7—N1—C1—C2 | 1.0 (3) |
O2—S1—C1—C2 | −4.23 (19) | C7—N2—C3—C2 | 0.5 (3) |
O2—S1—C8—C9 | −141.51 (19) | C7—N2—C3—C4 | −179.37 (18) |
O2—S1—C8—C13 | 37.3 (2) | C7—N2—C6—Cl1 | −1.5 (3) |
N1—C1—C2—C3 | −0.1 (3) | C7—N2—C6—C5 | 179.1 (2) |
N2—C3—C4—C5 | 0.2 (2) | C8—S1—C1—N1 | −70.37 (17) |
C1—S1—C8—C9 | 105.19 (19) | C8—S1—C1—C2 | 110.70 (18) |
C1—S1—C8—C13 | −76.0 (2) | C8—C9—C10—C11 | 0.6 (4) |
C1—N1—C7—N2 | −1.1 (3) | C9—C8—C13—C12 | −1.8 (4) |
C1—C2—C3—N2 | −0.6 (3) | C9—C10—C11—C12 | −1.1 (4) |
C1—C2—C3—C4 | 179.2 (2) | C9—C10—C11—C14 | 179.2 (2) |
C2—C3—C4—C5 | −179.7 (2) | C10—C11—C12—C13 | 0.2 (4) |
C3—N2—C6—Cl1 | 179.28 (14) | C11—C12—C13—C8 | 1.2 (4) |
C3—N2—C6—C5 | −0.1 (2) | C13—C8—C9—C10 | 0.9 (3) |
C3—N2—C7—N1 | 0.4 (3) | C14—C11—C12—C13 | 179.9 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14B···O2i | 0.96 | 2.49 | 3.329 (3) | 146 |
Symmetry code: (i) −x+1, −y+1, −z+2. |
Cg(I)—Cg(J) is the distance between ring centroids, α is dihedral angle between planes Cg(I) and Cg(J) and slippage is the distance between Cg(I) and perpendicular the projection of Cg(J) on ring I. Cg(1), Cg(2) and Cg(4) are the centroids N2/C3–C6, N1/C1/C2/C3/N2/C7 and C1–C7/N1/N2 rings, respectively. |
Cg(I)a | Cg(J)b | d[Cg(I)···Cg(J)] | α | slippage |
Cg(1) | Cg(1)i | 3.5758 (14) | 0.00 (13) | 1.169 |
Cg(1) | Cg(2)i | 3.6261 (14) | 0.73 (12) | 1.348 |
Cg(1) | Cg(2)ii | 3.6495 (14) | 0.73 (12) | 1.092 |
Cg(1) | Cg(4)i | 3.4423 (13) | 0.42 (11) | 0.699 |
Cg(1) | Cg(4)ii | 3.8876 (13) | 0.42 (11) | 1.738 |
Cg(2) | Cg(2)ii | 3.9724 (13) | 0.00 (10) | 1.932 |
Cg(2) | Cg(4)ii | 3.6901 (12) | 0.32 (9) | 1.233 |
Cg(4) | Cg(4)i | 3.7241 (11) | 0.00 (7) | 1.586 |
Cg(4) | Cg(4)ii | 3.6280 (11) | 0.00 (7) | 1.010 |
Symmetry codes: (i) 1 - x, -y, 1 - z; (ii) -x, 1 - y, 1 - z. |
Funding information
This work was supported by Dartmouth College. JPJ acknowledges the NSF–MRI program (grant No. CHE-1039027) for funds to purchase the X-ray diffractometer.
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