organic compounds
(2S,3S)-2-Azaniumyl-4-[(1S,4aS,4bS,6S,7S,8aS,10aS)-6,7-dihydroxy-2,4b,8,8,10a-pentamethyl-1,4,4a,4b,5,6,7,8,8a,9,10,10a-dodecahydrophenanthren-1-yl]-3-methoxybutanoate–methanol–water (1/1/1)
aInstitute of Pharmaceutical Sciences, Department of Pharmaceutial and Medicinal Chemistry, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 8, 72076 Tübingen, Germany, bDepartment of Organic Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, D-55099 Mainz, Germany, and cInstitute of Pharmaceutical Sciences, Department of Pharmaceutial Biology, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 8, 72076 Tübingen, Germany
*Correspondence e-mail: pierre.koch@uni-tuebingen.de
The title compound, which crystallized as a methanol and water solvate, C24H41NO5·CH4O·H2O, was obtained by heterologous expression of the brasilicardin gene cluster in the bacterium Amycolatopsis japonicum. In the crystal, the components are linked by numerous hydrogen bonds, generating a three-dimensional network.
CCDC reference: 1863527
Structure description
The title compound (Fig. 1), representing the aglycone of the natural products brasilicardin A and brasilicardin C, was obtained by heterologous expression of the brasilicardin gene cluster (Buchmann et al. 2016) in Amycolatopsis japonicum (Schwarz et al. 2018a,b). As a result of the anti–syn–anti configured B ring within the perhydrophenanthrene system, this tricyclic system is in an unusual chair–boat–chair conformation. For crystal structures of compounds having the same perhydrophenanthrene core, see Shigemori et al. (1998) and Komatsu et al. (2004).
The crystal packing is consolidated by a three-dimensional network of numerous hydrogen bonds (Table 1, Fig. 2).
Synthesis and crystallization
The title compound C24H41NO5 was isolated from a broth of Amycolatopsis japonicum::bcaAB01, which was cultivated under brasilicardin production conditions for 3 d (Schwarz et al. 2018a,b). The extract was purified by flash followed by preparative HPLC to yield the product C24H41NO5 as a white solid. The solid was dissolved in a minimum of methanol and crystals suitable for X-ray determination were subsequently obtained by slow evaporation of the solvent at 298 K.
1H NMR (400 MHz, CD3OD) δ 5.30 (br s, 1H), 3.95 (d, J = 3.5 Hz, 1H), 3.75 (dd, J = 11.2, 2.9 Hz, 1H), 3.57 (ddd, J = 11.2, 9.7, 4.2 Hz, 1H), 3.45 (s, 3H), 2.85 (d, J = 9.5 Hz, 1H), 1.94–1.78 (m, 3H), 1.74–1.66 (m, 2H), 1.65 (s, 3H), 1.64–1.53 (m, 4H), 1.36–1.24 (m, 4H), 1.10 (s, 3H), 1.02 (s, 3H), 0.96 (s, 3H), 0.89 (s, 3H). 13C NMR (101 MHz, CD3OD) δ 171.5, 138.9, 123.3, 84.6, 81.2, 70.2, 57.9, 56.2, 52.5, 47.2, 45.0, 44.6, 41.0, 38.6, 37.6, 31.7, 31.2, 29.4, 29.1, 27.0, 23.1, 22.7, 18.8, 17.4. MS (ESI) calculated for C24H41NO5 (M − H)− 422.3, found 422.4.
Refinement
Crystal data, data collection and structure . The was indeterminate based on the present The title compound (brasilicardin aglycone) was produced by a process and we assumed that the stereochemistry of the the title compound is the same as (1) the stereochemistry of the reported natural products Brasilicardin A and Brasilicardin C (the latter one was also obtained during our process) as well as (2) the stereochemistry of the title compound reported in the proposed biosynthetic pathway scheme of Brasilicardins A and C (Hayashi et al., 2008). This defines the configurations of the stereogenic centres as C2 S, C3 S, C5 S, C6 S, C7 R, C11 S, C12 S, C21, S and C22 S.
details are summarized in Table 2
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Structural data
CCDC reference: 1863527
https://doi.org/10.1107/S241431461801194X/hb4254sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S241431461801194X/hb4254Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S241431461801194X/hb4254Isup3.cml
Data collection: X-AREA (Stoe & Cie, 2011); cell
X-AREA (Stoe & Cie, 2011); data reduction: X-RED (Stoe & Cie, 2011); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015).C24H41NO5·CH4O·H2O | Dx = 1.173 Mg m−3 |
Mr = 473.63 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 15328 reflections |
a = 7.9093 (2) Å | θ = 1.7–28.4° |
b = 13.3712 (4) Å | µ = 0.08 mm−1 |
c = 25.3669 (7) Å | T = 193 K |
V = 2682.72 (13) Å3 | Coloumn, colourless |
Z = 4 | 0.45 × 0.09 × 0.08 mm |
F(000) = 1040 |
Stoe IPDS 2T diffractometer | 5482 reflections with I > 2σ(I) |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | Rint = 0.031 |
Detector resolution: 6.67 pixels mm-1 | θmax = 28.3°, θmin = 1.7° |
rotation method scans | h = −10→9 |
17021 measured reflections | k = −17→17 |
6656 independent reflections | l = −33→27 |
Refinement on F2 | Hydrogen site location: difference Fourier map |
Least-squares matrix: full | Only H-atom coordinates refined |
R[F2 > 2σ(F2)] = 0.049 | w = 1/[σ2(Fo2) + (0.0216P)2 + 1.5011P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.098 | (Δ/σ)max = 0.003 |
S = 1.07 | Δρmax = 0.24 e Å−3 |
6656 reflections | Δρmin = −0.18 e Å−3 |
465 parameters | Absolute structure: Flack x determined using 1941 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
0 restraints | Absolute structure parameter: −0.6 (7) |
Primary atom site location: structure-invariant direct methods |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. All the hydrogen atoms were localized in difference maps and their positions were refined with isotropic displacement parameters. |
x | y | z | Uiso*/Ueq | ||
O1L | −0.0039 (3) | 0.65612 (17) | 0.06774 (9) | 0.0321 (5) | |
H1L | 0.098 (5) | 0.664 (3) | 0.0782 (15) | 0.040 (10)* | |
C2L | −0.0906 (5) | 0.5995 (3) | 0.10662 (15) | 0.0377 (8) | |
H2L | −0.209 (6) | 0.625 (3) | 0.1094 (16) | 0.062 (8)* | |
H3L | −0.031 (6) | 0.603 (3) | 0.1424 (17) | 0.062 (8)* | |
H4L | −0.099 (5) | 0.526 (3) | 0.0962 (17) | 0.062 (8)* | |
O1W | 0.8169 (3) | 0.57637 (18) | −0.02510 (10) | 0.0316 (5) | |
H1W | 0.856 (5) | 0.586 (3) | −0.0569 (16) | 0.046 (8)* | |
H2W | 0.879 (5) | 0.606 (3) | −0.0042 (16) | 0.046 (8)* | |
C1 | 0.2183 (4) | 0.3791 (3) | 0.29186 (11) | 0.0295 (7) | |
C2 | 0.3519 (4) | 0.3486 (2) | 0.33292 (11) | 0.0250 (6) | |
H2 | 0.383 (4) | 0.277 (2) | 0.3247 (12) | 0.019 (8)* | |
C3 | 0.5130 (4) | 0.4103 (2) | 0.32866 (11) | 0.0245 (6) | |
H3 | 0.486 (4) | 0.481 (2) | 0.3363 (12) | 0.021 (8)* | |
C4 | 0.5913 (3) | 0.3976 (2) | 0.27431 (11) | 0.0234 (6) | |
H4A | 0.621 (4) | 0.326 (3) | 0.2696 (13) | 0.027 (6)* | |
H4B | 0.701 (4) | 0.436 (2) | 0.2730 (12) | 0.027 (6)* | |
C5 | 0.4738 (3) | 0.4269 (2) | 0.22846 (11) | 0.0211 (6) | |
C6 | 0.3031 (3) | 0.3733 (2) | 0.23637 (11) | 0.0237 (6) | |
H6 | 0.331 (4) | 0.299 (2) | 0.2338 (11) | 0.015 (7)* | |
C7 | 0.5516 (3) | 0.3947 (2) | 0.17323 (10) | 0.0194 (5) | |
H7 | 0.598 (4) | 0.459 (2) | 0.1579 (11) | 0.015 (7)* | |
C8 | 0.7041 (4) | 0.3244 (2) | 0.17471 (12) | 0.0258 (6) | |
H8A | 0.797 (4) | 0.353 (2) | 0.1952 (13) | 0.030 (6)* | |
H8B | 0.678 (4) | 0.261 (3) | 0.1930 (13) | 0.030 (6)* | |
C9 | 0.7706 (4) | 0.3079 (2) | 0.11968 (12) | 0.0270 (6) | |
H9 | 0.883 (4) | 0.280 (2) | 0.1177 (13) | 0.030 (9)* | |
C10 | 0.6879 (4) | 0.3311 (2) | 0.07569 (11) | 0.0234 (6) | |
C11 | 0.5097 (3) | 0.3730 (2) | 0.07633 (10) | 0.0194 (5) | |
H11 | 0.450 (4) | 0.335 (2) | 0.0491 (12) | 0.020 (8)* | |
C12 | 0.4250 (3) | 0.3558 (2) | 0.13094 (10) | 0.0199 (5) | |
C13 | 0.2593 (3) | 0.4127 (2) | 0.13744 (11) | 0.0245 (6) | |
H13A | 0.182 (4) | 0.391 (2) | 0.1089 (12) | 0.023 (6)* | |
H13B | 0.281 (4) | 0.486 (2) | 0.1316 (12) | 0.023 (6)* | |
C14 | 0.1764 (4) | 0.3940 (3) | 0.19145 (12) | 0.0313 (7) | |
H14A | 0.099 (5) | 0.337 (3) | 0.1884 (15) | 0.042 (7)* | |
H14B | 0.101 (5) | 0.452 (3) | 0.2025 (15) | 0.042 (7)* | |
C15 | 0.1417 (5) | 0.4816 (3) | 0.30652 (15) | 0.0449 (10) | |
H15A | 0.230 (6) | 0.531 (3) | 0.3128 (18) | 0.069 (8)* | |
H15B | 0.087 (6) | 0.475 (3) | 0.3390 (19) | 0.069 (8)* | |
H15C | 0.064 (6) | 0.505 (3) | 0.2776 (19) | 0.069 (8)* | |
C16 | 0.0749 (4) | 0.3022 (3) | 0.29376 (14) | 0.0408 (9) | |
H16A | −0.028 (5) | 0.324 (3) | 0.2697 (14) | 0.044 (6)* | |
H16B | 0.034 (5) | 0.296 (3) | 0.3297 (16) | 0.044 (6)* | |
H16C | 0.123 (5) | 0.238 (3) | 0.2831 (15) | 0.044 (6)* | |
C17 | 0.4580 (5) | 0.5423 (2) | 0.22788 (14) | 0.0324 (7) | |
H17A | 0.571 (5) | 0.570 (3) | 0.2210 (15) | 0.046 (6)* | |
H17B | 0.426 (5) | 0.571 (3) | 0.2631 (16) | 0.046 (6)* | |
H17C | 0.375 (5) | 0.565 (3) | 0.2013 (15) | 0.046 (6)* | |
C18 | 0.7657 (4) | 0.3147 (3) | 0.02232 (14) | 0.0322 (7) | |
H18A | 0.694 (5) | 0.274 (3) | −0.0009 (15) | 0.046 (6)* | |
H18B | 0.871 (5) | 0.278 (3) | 0.0249 (15) | 0.046 (6)* | |
H18C | 0.784 (5) | 0.377 (3) | 0.0029 (14) | 0.046 (6)* | |
C19 | 0.3867 (4) | 0.2422 (2) | 0.13407 (13) | 0.0276 (6) | |
H19A | 0.302 (5) | 0.224 (3) | 0.1063 (15) | 0.047 (6)* | |
H19B | 0.335 (5) | 0.220 (3) | 0.1681 (16) | 0.047 (6)* | |
H19C | 0.482 (5) | 0.203 (3) | 0.1262 (15) | 0.047 (6)* | |
C20 | 0.5108 (3) | 0.4819 (2) | 0.05625 (11) | 0.0192 (5) | |
H20A | 0.522 (4) | 0.529 (2) | 0.0871 (12) | 0.021 (5)* | |
H20B | 0.611 (4) | 0.495 (2) | 0.0340 (12) | 0.021 (5)* | |
C21 | 0.3581 (3) | 0.5118 (2) | 0.02327 (10) | 0.0192 (5) | |
H21 | 0.256 (4) | 0.503 (2) | 0.0441 (12) | 0.023* | |
C22 | 0.3638 (3) | 0.6232 (2) | 0.00644 (10) | 0.0199 (5) | |
H22 | 0.257 (4) | 0.642 (2) | −0.0047 (11) | 0.021 (8)* | |
C23 | 0.4186 (3) | 0.6903 (2) | 0.05199 (11) | 0.0217 (6) | |
O24 | 0.5567 (2) | 0.73372 (15) | 0.04793 (8) | 0.0266 (5) | |
O25 | 0.3182 (3) | 0.69380 (16) | 0.09077 (8) | 0.0277 (5) | |
N26 | 0.4811 (3) | 0.6366 (2) | −0.03900 (9) | 0.0228 (5) | |
H26A | 0.441 (4) | 0.599 (3) | −0.0668 (15) | 0.035 (9)* | |
H26B | 0.476 (5) | 0.703 (3) | −0.0493 (15) | 0.048 (11)* | |
H26C | 0.583 (5) | 0.622 (3) | −0.0309 (14) | 0.033 (9)* | |
O27 | 0.3531 (3) | 0.44976 (14) | −0.02207 (8) | 0.0264 (5) | |
C28 | 0.1883 (5) | 0.4378 (3) | −0.04375 (15) | 0.0372 (8) | |
H28A | 0.146 (5) | 0.499 (3) | −0.0587 (15) | 0.043 (6)* | |
H28B | 0.114 (5) | 0.412 (3) | −0.0142 (15) | 0.043 (6)* | |
H28C | 0.201 (5) | 0.386 (3) | −0.0738 (15) | 0.043 (6)* | |
O29 | 0.6326 (3) | 0.38410 (18) | 0.36899 (8) | 0.0292 (5) | |
H29 | 0.644 (5) | 0.322 (3) | 0.3725 (17) | 0.056 (13)* | |
O30 | 0.2805 (3) | 0.35337 (18) | 0.38417 (8) | 0.0316 (5) | |
H30 | 0.342 (5) | 0.319 (3) | 0.4043 (16) | 0.050 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1L | 0.0246 (11) | 0.0397 (12) | 0.0319 (12) | −0.0017 (10) | −0.0002 (9) | 0.0074 (10) |
C2L | 0.0330 (17) | 0.040 (2) | 0.040 (2) | −0.0047 (15) | 0.0026 (15) | 0.0076 (16) |
O1W | 0.0296 (11) | 0.0384 (13) | 0.0267 (12) | −0.0017 (10) | 0.0056 (10) | 0.0071 (10) |
C1 | 0.0246 (14) | 0.0452 (18) | 0.0187 (14) | 0.0086 (13) | 0.0035 (11) | 0.0082 (13) |
C2 | 0.0249 (14) | 0.0324 (15) | 0.0178 (14) | 0.0049 (13) | 0.0031 (11) | 0.0029 (12) |
C3 | 0.0286 (14) | 0.0285 (15) | 0.0163 (13) | 0.0032 (12) | −0.0034 (11) | 0.0003 (11) |
C4 | 0.0210 (13) | 0.0315 (16) | 0.0176 (14) | −0.0011 (12) | −0.0018 (11) | 0.0027 (12) |
C5 | 0.0213 (13) | 0.0258 (13) | 0.0163 (13) | 0.0027 (11) | 0.0028 (10) | 0.0031 (11) |
C6 | 0.0187 (12) | 0.0346 (16) | 0.0177 (14) | 0.0045 (12) | 0.0006 (10) | 0.0045 (12) |
C7 | 0.0182 (12) | 0.0241 (13) | 0.0158 (13) | −0.0006 (11) | 0.0003 (10) | 0.0022 (11) |
C8 | 0.0209 (13) | 0.0367 (17) | 0.0198 (14) | 0.0056 (13) | −0.0019 (11) | 0.0030 (12) |
C9 | 0.0216 (14) | 0.0329 (15) | 0.0265 (16) | 0.0068 (12) | 0.0043 (11) | −0.0007 (13) |
C10 | 0.0263 (13) | 0.0197 (13) | 0.0240 (14) | −0.0014 (11) | 0.0062 (12) | 0.0008 (11) |
C11 | 0.0216 (12) | 0.0219 (13) | 0.0146 (12) | −0.0006 (11) | −0.0012 (10) | 0.0009 (10) |
C12 | 0.0185 (12) | 0.0249 (13) | 0.0163 (13) | −0.0004 (11) | 0.0017 (10) | 0.0028 (11) |
C13 | 0.0185 (13) | 0.0378 (17) | 0.0173 (14) | 0.0009 (12) | −0.0006 (10) | 0.0048 (12) |
C14 | 0.0189 (14) | 0.054 (2) | 0.0208 (15) | 0.0051 (15) | 0.0014 (11) | 0.0109 (14) |
C15 | 0.044 (2) | 0.063 (2) | 0.0276 (18) | 0.031 (2) | 0.0105 (16) | 0.0109 (18) |
C16 | 0.0227 (15) | 0.074 (3) | 0.0263 (17) | −0.0019 (17) | 0.0036 (13) | 0.0157 (18) |
C17 | 0.0434 (19) | 0.0291 (16) | 0.0247 (16) | 0.0068 (14) | 0.0003 (14) | 0.0009 (13) |
C18 | 0.0359 (17) | 0.0325 (17) | 0.0283 (17) | 0.0065 (14) | 0.0105 (14) | 0.0021 (14) |
C19 | 0.0317 (16) | 0.0282 (15) | 0.0229 (15) | −0.0065 (13) | −0.0009 (13) | 0.0031 (12) |
C20 | 0.0182 (12) | 0.0218 (12) | 0.0175 (13) | −0.0017 (10) | −0.0026 (10) | 0.0015 (11) |
C21 | 0.0205 (12) | 0.0224 (13) | 0.0148 (12) | −0.0017 (11) | −0.0001 (10) | −0.0005 (11) |
C22 | 0.0183 (12) | 0.0236 (13) | 0.0178 (13) | 0.0020 (11) | −0.0010 (10) | 0.0025 (11) |
C23 | 0.0242 (13) | 0.0207 (13) | 0.0203 (14) | 0.0015 (11) | −0.0048 (11) | 0.0016 (11) |
O24 | 0.0257 (10) | 0.0301 (10) | 0.0240 (11) | −0.0067 (9) | 0.0000 (8) | −0.0047 (8) |
O25 | 0.0282 (10) | 0.0318 (11) | 0.0232 (11) | −0.0027 (9) | 0.0044 (9) | −0.0040 (8) |
N26 | 0.0232 (12) | 0.0285 (13) | 0.0167 (12) | −0.0027 (11) | −0.0029 (9) | 0.0016 (10) |
O27 | 0.0302 (10) | 0.0275 (10) | 0.0214 (10) | 0.0017 (9) | −0.0068 (9) | −0.0045 (8) |
C28 | 0.0405 (18) | 0.0313 (17) | 0.040 (2) | −0.0045 (15) | −0.0196 (16) | −0.0011 (15) |
O29 | 0.0352 (12) | 0.0338 (12) | 0.0187 (10) | −0.0026 (10) | −0.0071 (9) | 0.0021 (9) |
O30 | 0.0310 (11) | 0.0463 (13) | 0.0174 (10) | 0.0134 (10) | 0.0049 (9) | 0.0091 (10) |
O1L—C2L | 1.420 (4) | C13—C14 | 1.539 (4) |
O1L—H1L | 0.86 (4) | C13—H13A | 0.99 (3) |
C2L—H2L | 1.00 (4) | C13—H13B | 1.01 (3) |
C2L—H3L | 1.02 (4) | C14—H14A | 0.99 (4) |
C2L—H4L | 1.02 (5) | C14—H14B | 1.02 (4) |
O1W—H1W | 0.87 (4) | C15—H15A | 0.97 (5) |
O1W—H2W | 0.83 (4) | C15—H15B | 0.94 (5) |
C1—C16 | 1.531 (5) | C15—H15C | 1.00 (5) |
C1—C2 | 1.539 (4) | C16—H16A | 1.06 (4) |
C1—C15 | 1.544 (5) | C16—H16B | 0.97 (4) |
C1—C6 | 1.561 (4) | C16—H16C | 0.98 (4) |
C2—O30 | 1.419 (3) | C17—H17A | 0.99 (4) |
C2—C3 | 1.522 (4) | C17—H17B | 1.00 (4) |
C2—H2 | 1.01 (3) | C17—H17C | 0.99 (4) |
C3—O29 | 1.436 (3) | C18—H18A | 0.98 (4) |
C3—C4 | 1.521 (4) | C18—H18B | 0.97 (4) |
C3—H3 | 0.99 (3) | C18—H18C | 0.98 (4) |
C4—C5 | 1.539 (4) | C19—H19A | 1.00 (4) |
C4—H4A | 0.99 (3) | C19—H19B | 1.00 (4) |
C4—H4B | 1.00 (3) | C19—H19C | 0.94 (4) |
C5—C6 | 1.542 (4) | C20—C21 | 1.523 (4) |
C5—C17 | 1.549 (4) | C20—H20A | 1.01 (3) |
C5—C7 | 1.590 (4) | C20—H20B | 0.99 (3) |
C6—C14 | 1.542 (4) | C21—O27 | 1.419 (3) |
C6—H6 | 1.02 (3) | C21—C22 | 1.550 (4) |
C7—C8 | 1.529 (4) | C21—H21 | 0.97 (3) |
C7—C12 | 1.557 (4) | C22—N26 | 1.490 (4) |
C7—H7 | 1.02 (3) | C22—C23 | 1.525 (4) |
C8—C9 | 1.508 (4) | C22—H22 | 0.93 (3) |
C8—H8A | 0.98 (3) | C23—O24 | 1.242 (3) |
C8—H8B | 0.98 (3) | C23—O25 | 1.265 (3) |
C9—C10 | 1.330 (4) | N26—H26A | 0.92 (4) |
C9—H9 | 0.96 (3) | N26—H26B | 0.92 (4) |
C10—C18 | 1.503 (4) | N26—H26C | 0.86 (4) |
C10—C11 | 1.517 (4) | O27—C28 | 1.424 (4) |
C11—C20 | 1.543 (4) | C28—H28A | 0.96 (4) |
C11—C12 | 1.556 (4) | C28—H28B | 1.01 (4) |
C11—H11 | 0.98 (3) | C28—H28C | 1.04 (4) |
C12—C13 | 1.524 (4) | O29—H29 | 0.84 (4) |
C12—C19 | 1.550 (4) | O30—H30 | 0.84 (4) |
C2L—O1L—H1L | 108 (3) | C14—C13—H13A | 109.8 (17) |
O1L—C2L—H2L | 109 (2) | C12—C13—H13B | 109.1 (18) |
O1L—C2L—H3L | 112 (2) | C14—C13—H13B | 111.1 (18) |
H2L—C2L—H3L | 111 (3) | H13A—C13—H13B | 106 (2) |
O1L—C2L—H4L | 111 (2) | C13—C14—C6 | 114.2 (2) |
H2L—C2L—H4L | 107 (3) | C13—C14—H14A | 109 (2) |
H3L—C2L—H4L | 108 (3) | C6—C14—H14A | 109 (2) |
H1W—O1W—H2W | 108 (4) | C13—C14—H14B | 112 (2) |
C16—C1—C2 | 108.0 (3) | C6—C14—H14B | 108 (2) |
C16—C1—C15 | 107.3 (3) | H14A—C14—H14B | 105 (3) |
C2—C1—C15 | 110.0 (3) | C1—C15—H15A | 111 (3) |
C16—C1—C6 | 108.3 (3) | C1—C15—H15B | 108 (3) |
C2—C1—C6 | 107.6 (2) | H15A—C15—H15B | 105 (4) |
C15—C1—C6 | 115.4 (3) | C1—C15—H15C | 109 (3) |
O30—C2—C3 | 111.9 (2) | H15A—C15—H15C | 111 (4) |
O30—C2—C1 | 109.6 (2) | H15B—C15—H15C | 113 (4) |
C3—C2—C1 | 112.6 (2) | C1—C16—H16A | 112 (2) |
O30—C2—H2 | 109.1 (17) | C1—C16—H16B | 109 (2) |
C3—C2—H2 | 107.2 (17) | H16A—C16—H16B | 108 (3) |
C1—C2—H2 | 106.2 (17) | C1—C16—H16C | 107 (2) |
O29—C3—C4 | 110.5 (2) | H16A—C16—H16C | 113 (3) |
O29—C3—C2 | 111.6 (2) | H16B—C16—H16C | 109 (3) |
C4—C3—C2 | 110.2 (2) | C5—C17—H17A | 108 (2) |
O29—C3—H3 | 103.7 (18) | C5—C17—H17B | 113 (2) |
C4—C3—H3 | 111.9 (17) | H17A—C17—H17B | 104 (3) |
C2—C3—H3 | 108.8 (18) | C5—C17—H17C | 111 (2) |
C3—C4—C5 | 114.3 (2) | H17A—C17—H17C | 112 (3) |
C3—C4—H4A | 108.3 (19) | H17B—C17—H17C | 109 (3) |
C5—C4—H4A | 107.3 (19) | C10—C18—H18A | 113 (2) |
C3—C4—H4B | 108.9 (18) | C10—C18—H18B | 111 (2) |
C5—C4—H4B | 111.6 (18) | H18A—C18—H18B | 105 (3) |
H4A—C4—H4B | 106 (3) | C10—C18—H18C | 113 (2) |
C4—C5—C6 | 108.2 (2) | H18A—C18—H18C | 105 (3) |
C4—C5—C17 | 108.0 (3) | H18B—C18—H18C | 109 (3) |
C6—C5—C17 | 113.2 (2) | C12—C19—H19A | 109 (2) |
C4—C5—C7 | 111.3 (2) | C12—C19—H19B | 114 (2) |
C6—C5—C7 | 109.1 (2) | H19A—C19—H19B | 105 (3) |
C17—C5—C7 | 107.0 (2) | C12—C19—H19C | 112 (2) |
C5—C6—C14 | 112.9 (2) | H19A—C19—H19C | 105 (3) |
C5—C6—C1 | 118.1 (2) | H19B—C19—H19C | 110 (3) |
C14—C6—C1 | 112.2 (2) | C21—C20—C11 | 115.1 (2) |
C5—C6—H6 | 104.9 (16) | C21—C20—H20A | 109.4 (17) |
C14—C6—H6 | 105.4 (16) | C11—C20—H20A | 109.4 (17) |
C1—C6—H6 | 101.4 (16) | C21—C20—H20B | 106.2 (17) |
C8—C7—C12 | 108.6 (2) | C11—C20—H20B | 110.8 (17) |
C8—C7—C5 | 116.7 (2) | H20A—C20—H20B | 105 (2) |
C12—C7—C5 | 116.6 (2) | O27—C21—C20 | 108.3 (2) |
C8—C7—H7 | 104.4 (16) | O27—C21—C22 | 109.8 (2) |
C12—C7—H7 | 104.5 (16) | C20—C21—C22 | 112.3 (2) |
C5—C7—H7 | 104.3 (16) | O27—C21—H21 | 110.3 (18) |
C9—C8—C7 | 110.0 (2) | C20—C21—H21 | 109.2 (18) |
C9—C8—H8A | 106.7 (19) | C22—C21—H21 | 106.9 (18) |
C7—C8—H8A | 111.4 (19) | N26—C22—C23 | 109.8 (2) |
C9—C8—H8B | 112.6 (19) | N26—C22—C21 | 110.3 (2) |
C7—C8—H8B | 111.8 (19) | C23—C22—C21 | 111.4 (2) |
H8A—C8—H8B | 104 (3) | N26—C22—H22 | 107.5 (18) |
C10—C9—C8 | 124.8 (3) | C23—C22—H22 | 109.3 (19) |
C10—C9—H9 | 120 (2) | C21—C22—H22 | 108.5 (19) |
C8—C9—H9 | 115 (2) | O24—C23—O25 | 126.8 (3) |
C9—C10—C18 | 121.4 (3) | O24—C23—C22 | 117.5 (3) |
C9—C10—C11 | 122.3 (3) | O25—C23—C22 | 115.6 (2) |
C18—C10—C11 | 116.4 (3) | C22—N26—H26A | 108 (2) |
C10—C11—C20 | 109.9 (2) | C22—N26—H26B | 108 (3) |
C10—C11—C12 | 110.8 (2) | H26A—N26—H26B | 106 (3) |
C20—C11—C12 | 115.9 (2) | C22—N26—H26C | 112 (2) |
C10—C11—H11 | 104.1 (17) | H26A—N26—H26C | 113 (3) |
C20—C11—H11 | 105.4 (17) | H26B—N26—H26C | 109 (3) |
C12—C11—H11 | 110.0 (17) | C21—O27—C28 | 113.8 (2) |
C13—C12—C19 | 108.4 (2) | O27—C28—H28A | 112 (2) |
C13—C12—C11 | 113.1 (2) | O27—C28—H28B | 106 (2) |
C19—C12—C11 | 106.0 (2) | H28A—C28—H28B | 112 (3) |
C13—C12—C7 | 108.1 (2) | O27—C28—H28C | 106 (2) |
C19—C12—C7 | 114.7 (2) | H28A—C28—H28C | 108 (3) |
C11—C12—C7 | 106.6 (2) | H28B—C28—H28C | 112 (3) |
C12—C13—C14 | 112.4 (2) | C3—O29—H29 | 113 (3) |
C12—C13—H13A | 107.9 (17) | C2—O30—H30 | 108 (3) |
C16—C1—C2—O30 | −63.7 (3) | C8—C9—C10—C11 | −3.1 (5) |
C15—C1—C2—O30 | 53.2 (3) | C9—C10—C11—C20 | 113.1 (3) |
C6—C1—C2—O30 | 179.6 (3) | C18—C10—C11—C20 | −68.2 (3) |
C16—C1—C2—C3 | 171.1 (3) | C9—C10—C11—C12 | −16.2 (4) |
C15—C1—C2—C3 | −72.1 (3) | C18—C10—C11—C12 | 162.5 (2) |
C6—C1—C2—C3 | 54.4 (3) | C10—C11—C12—C13 | 169.4 (2) |
O30—C2—C3—O29 | 53.1 (3) | C20—C11—C12—C13 | 43.3 (3) |
C1—C2—C3—O29 | 177.1 (2) | C10—C11—C12—C19 | −72.0 (3) |
O30—C2—C3—C4 | 176.3 (2) | C20—C11—C12—C19 | 161.9 (2) |
C1—C2—C3—C4 | −59.7 (3) | C10—C11—C12—C7 | 50.6 (3) |
O29—C3—C4—C5 | −178.3 (2) | C20—C11—C12—C7 | −75.5 (3) |
C2—C3—C4—C5 | 57.8 (3) | C8—C7—C12—C13 | 168.6 (2) |
C3—C4—C5—C6 | −50.5 (3) | C5—C7—C12—C13 | 34.1 (3) |
C3—C4—C5—C17 | 72.4 (3) | C8—C7—C12—C19 | 47.4 (3) |
C3—C4—C5—C7 | −170.4 (2) | C5—C7—C12—C19 | −87.0 (3) |
C4—C5—C6—C14 | −177.9 (2) | C8—C7—C12—C11 | −69.5 (3) |
C17—C5—C6—C14 | 62.4 (3) | C5—C7—C12—C11 | 156.1 (2) |
C7—C5—C6—C14 | −56.6 (3) | C19—C12—C13—C14 | 62.3 (3) |
C4—C5—C6—C1 | 48.4 (3) | C11—C12—C13—C14 | 179.5 (3) |
C17—C5—C6—C1 | −71.3 (3) | C7—C12—C13—C14 | −62.7 (3) |
C7—C5—C6—C1 | 169.7 (2) | C12—C13—C14—C6 | 30.8 (4) |
C16—C1—C6—C5 | −167.2 (3) | C5—C6—C14—C13 | 30.5 (4) |
C2—C1—C6—C5 | −50.7 (3) | C1—C6—C14—C13 | 167.0 (3) |
C15—C1—C6—C5 | 72.5 (4) | C10—C11—C20—C21 | 143.4 (2) |
C16—C1—C6—C14 | 58.8 (3) | C12—C11—C20—C21 | −90.1 (3) |
C2—C1—C6—C14 | 175.3 (3) | C11—C20—C21—O27 | −60.9 (3) |
C15—C1—C6—C14 | −61.5 (4) | C11—C20—C21—C22 | 177.6 (2) |
C4—C5—C7—C8 | 11.8 (3) | O27—C21—C22—N26 | −41.8 (3) |
C6—C5—C7—C8 | −107.5 (3) | C20—C21—C22—N26 | 78.8 (3) |
C17—C5—C7—C8 | 129.6 (3) | O27—C21—C22—C23 | −164.0 (2) |
C4—C5—C7—C12 | 142.5 (2) | C20—C21—C22—C23 | −43.4 (3) |
C6—C5—C7—C12 | 23.2 (3) | N26—C22—C23—O24 | −8.9 (3) |
C17—C5—C7—C12 | −99.6 (3) | C21—C22—C23—O24 | 113.6 (3) |
C12—C7—C8—C9 | 50.1 (3) | N26—C22—C23—O25 | 172.5 (2) |
C5—C7—C8—C9 | −175.5 (2) | C21—C22—C23—O25 | −65.0 (3) |
C7—C8—C9—C10 | −14.5 (4) | C20—C21—O27—C28 | 154.3 (2) |
C8—C9—C10—C18 | 178.3 (3) | C22—C21—O27—C28 | −82.7 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1L—H1L···O25 | 0.86 (4) | 1.81 (4) | 2.662 (3) | 171 (4) |
O1W—H1W···O29i | 0.87 (4) | 1.92 (4) | 2.767 (3) | 162 (4) |
O1W—H2W···O1Lii | 0.83 (4) | 2.15 (4) | 2.948 (3) | 162 (4) |
C20—H20B···O1W | 0.99 (3) | 2.47 (3) | 3.423 (3) | 162 (2) |
C22—H22···O24iii | 0.93 (3) | 2.54 (3) | 3.385 (3) | 151 (3) |
N26—H26A···O30iv | 0.92 (4) | 2.24 (4) | 2.846 (3) | 123 (3) |
N26—H26B···O1Lv | 0.92 (4) | 1.95 (4) | 2.869 (3) | 172 (4) |
N26—H26C···O1W | 0.86 (4) | 1.95 (4) | 2.798 (3) | 169 (3) |
C28—H28A···O30iv | 0.96 (4) | 2.51 (4) | 3.346 (4) | 144 (3) |
O29—H29···O25vi | 0.84 (4) | 1.97 (4) | 2.769 (3) | 157 (4) |
O30—H30···O24vi | 0.84 (4) | 1.85 (4) | 2.680 (3) | 171 (4) |
Symmetry codes: (i) −x+3/2, −y+1, z−1/2; (ii) x+1, y, z; (iii) x−1/2, −y+3/2, −z; (iv) −x+1/2, −y+1, z−1/2; (v) x+1/2, −y+3/2, −z; (vi) −x+1, y−1/2, −z+1/2. |
Acknowledgements
Special thanks go to all PIs and coworkers of the `NeBrasCa' consortium for helpful discussions.
Funding information
Funding for this research was provided by: Federal Ministry for Research and Education (BMBF, FKZ: 031A568A).
References
Buchmann, A., Eitel, M., Koch, P., Schwarz, P. N., Stegmann, E., Wohlleben, W., Wolański, M., Krawiec, M., Zakrzewska-Czerwińska, J., Méndez, C., Botas, A., Núñez, L. E., Morís, F., Cortés, J. & Gross, H. (2016). Genome Announc. 4, e01391–16. doi: 10.1128/genomeA.01391-1. CrossRef Google Scholar
Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst. 38, 381–388. Web of Science CrossRef CAS IUCr Journals Google Scholar
Hayashi, Y., Matsuura, N., Toshima, H., Itoh, N., Ishikawa, J., Mikami, Y. & Dairi, T. (2008). J. Antibiot. 61, 164, 174. Google Scholar
Komatsu, K., Tsuda, M., Shiro, M., Tanaka, Y., Mikami, Y. & Kobayashi, J. (2004). Bioorg. Med. Chem. 12, 5545–5551. CrossRef Google Scholar
Schwarz, P. N., Buchmann, A., Roller, L., Kulik, A., Gross, H., Wohlleben, W. & Stegmann, E. (2018a). Biotechnol. J. 13, 1700527. CrossRef Google Scholar
Schwarz, P. N., Roller, L., Kulik, A., Wohlleben, W. & Stegmann, E. (2018b). Synth. Syst. Biotechnol. 3, 56–63. CrossRef Google Scholar
Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Shigemori, H., Komaki, H., Yazawa, K., Mikami, Y., Nemoto, A., Tanaka, Y., Sasaki, T., In, Y., Ishida, T. & Kobayashi, J. (1998). J. Org. Chem. 63, 6900–6904. CrossRef Google Scholar
Stoe & Cie (2011). X-RED and X-AREA. Stoe & Cie, Darmstadt, Darmstadt, Germany. Google Scholar
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