organic compounds
4-Chloro-5-(morpholin-4-yl)-2-[(5-phenyl-1,3,4-oxadiazol-2-yl)methyl]pyridazin-3(2H)-one
aCollege of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, 333 Longteng Road, Shanghai, People's Republic of China
*Correspondence e-mail: lihongsen19@163.com
In the title compound, C17H16ClN5O3, the phenyl and the oxadiazole rings are almost coplanar, subtending a dihedral angle of 4.34 (19)°. These rings lie almost normal to the pyridazine ring, making dihedral angles of 87.35 (16) and 89.06 (15)°, respectively. The morpholine ring has the usual chair conformation and its mean plane is inclined to the pyridazine ring by 39.45 (17)°. There is a short intramolecular C—H⋯Cl contact present. In the crystal, molecules are linked by bifurcated C—(H,H)⋯O hydrogen bonds and a C—H⋯N hydrogen bond, forming layers parallel to the ab plane.
Keywords: crystal structure; 1,3,4-oxadiazole; pyridazin-3-one; morpholino; hydrogen bonding.
CCDC reference: 1536569
Structure description
1,3,4-Oxadiazole derivatives are a promising field of study because they possess good bioactivity (Liu et al., 2014). This substructural unit has been used as a scaffold to design and synthesize chemical compounds with biological, medicinal and agricultural activities (Gan et al., 2016; Shaikh & Meshram, 2016; Luqman et al., 2015; Fershtat et al. 2016; Pattison et al., 2009). A series of oxadiazoles containing a pyridazinone ring have been designed and synthesized, and we report herein on the of one such compound.
The molecular structure of the title compound is shown in Fig. 1. The phenyl (C1–C6) and the oxadiazole (O1/N1/N2/C7/C8) rings are almost coplanar, subtending a dihedral angle of 4.34 (19)°. These rings lie almost normal to the pyridazine (N3/N4/C10–C13) ring, making dihedral angles of 87.35 (16) and 89.06 (15)°, respectively. The morpholine (O3/N5/C14–C17) ring has a chair conformation and its mean plane is inclined to the pyridazine ring by 39.45 (17)°. There is a short intramolecular C—H⋯Cl contact present (Table 1, Fig. 1).
In the crystal, molecules are linked by bifurcated C—(H,H)⋯O hydrogen bonds and C—H⋯·N hydrogen bond bonds, forming layers parallel to the ab plane (Table 1 and Fig. 2).
Synthesis and crystallization
To a three-necked flask, 4,5-dichloro-2-((5- phenyl-1,3,4-oxadiazol-2-yl)methyl)-pyridazin-3-(2H)-one (3.0 g, 9.3 mmol; Li et al., 2005) and morpholine (14.0 mmol, 1.22 g) were added and reacted at 333 K for 8 h in the presence of potassium carbonate (2 g) and 20 ml dry DMF. The reaction was monitored by TLC. On completion of the reaction, the mixture was poured into ice–water. The precipitate formed was collected by filtration, dried to give the pure title compound (yield 2.23 g, 64.2%). It was recrystallized from chloroform, ethyl acetate and petroleum (2:2:5) to give pale-yellow prismatic crystals (m.p. 461–463 K).
1H NMR (CDCl3): 3.47 (t, 4H), 3.86 (t, 4H), 5.64 (s, 2H), 7.53 (m, 3H), 7.68 (s, 1H), 8.06 (m, 2H). IR (KBr, cm−1) ν 2957, 2857, 1641, 1593, 1549, 1487, 1446, 1423, 1257, 1117, 780.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2
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Structural data
CCDC reference: 1536569
https://doi.org/10.1107/S2414314617003704/su4138sup1.cif
contains datablocks I, Global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314617003704/su4138Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314617003704/su4138Isup3.cml
Data collection: SMART (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C17H16ClN5O3 | Dx = 1.476 Mg m−3 |
Mr = 373.80 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 3057 reflections |
a = 4.7931 (7) Å | θ = 4.6–50.4° |
b = 10.4177 (15) Å | µ = 0.26 mm−1 |
c = 33.685 (5) Å | T = 293 K |
V = 1682.0 (4) Å3 | Prismatic, pale-yellow |
Z = 4 | 0.20 × 0.16 × 0.11 mm |
F(000) = 776 |
Bruker SMART CCD area detector diffractometer | 2995 reflections with I > 2σ(I) |
phi and ω scans | Rint = 0.036 |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | θmax = 26.0°, θmin = 2.1° |
Tmin = 0.658, Tmax = 0.746 | h = −5→5 |
10022 measured reflections | k = −12→12 |
3282 independent reflections | l = −40→41 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0555P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.002 |
3282 reflections | Δρmax = 0.21 e Å−3 |
235 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Absolute structure: Flack x determined using 1105 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.05 (3) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.59088 (15) | −0.01685 (6) | 0.76733 (2) | 0.0433 (2) | |
N1 | 0.4856 (6) | 0.2459 (3) | 0.59442 (7) | 0.0529 (7) | |
N2 | 0.3286 (6) | 0.2745 (3) | 0.62853 (7) | 0.0486 (7) | |
N3 | 0.0445 (5) | 0.1687 (2) | 0.70294 (7) | 0.0368 (5) | |
N4 | −0.0777 (6) | 0.2543 (2) | 0.72725 (7) | 0.0396 (5) | |
N5 | 0.2681 (5) | 0.1739 (2) | 0.82072 (7) | 0.0405 (6) | |
O1 | 0.1658 (5) | 0.09679 (19) | 0.60219 (6) | 0.0451 (5) | |
O2 | 0.3400 (4) | 0.00730 (18) | 0.68817 (6) | 0.0452 (5) | |
O3 | 0.2610 (7) | 0.1845 (3) | 0.90460 (7) | 0.0765 (9) | |
C1 | 0.3377 (8) | −0.0400 (4) | 0.53314 (10) | 0.0608 (10) | |
H1 | 0.2004 | −0.0757 | 0.5492 | 0.073* | |
C2 | 0.4134 (11) | −0.1013 (4) | 0.49869 (11) | 0.0736 (11) | |
H2 | 0.3278 | −0.1779 | 0.4914 | 0.088* | |
C3 | 0.6176 (10) | −0.0483 (4) | 0.47491 (11) | 0.0722 (11) | |
H3 | 0.6687 | −0.0890 | 0.4514 | 0.087* | |
C4 | 0.7437 (9) | 0.0626 (4) | 0.48555 (10) | 0.0690 (11) | |
H4 | 0.8819 | 0.0972 | 0.4694 | 0.083* | |
C5 | 0.6695 (8) | 0.1252 (4) | 0.52024 (10) | 0.0581 (9) | |
H5 | 0.7578 | 0.2012 | 0.5274 | 0.070* | |
C6 | 0.4629 (7) | 0.0738 (3) | 0.54413 (8) | 0.0462 (8) | |
C7 | 0.3820 (7) | 0.1421 (3) | 0.57997 (8) | 0.0430 (7) | |
C8 | 0.1487 (7) | 0.1844 (3) | 0.63175 (8) | 0.0400 (7) | |
C9 | −0.0686 (7) | 0.1662 (3) | 0.66278 (8) | 0.0421 (7) | |
H9A | −0.2075 | 0.2334 | 0.6602 | 0.050* | |
H9B | −0.1610 | 0.0845 | 0.6584 | 0.050* | |
C10 | 0.2450 (6) | 0.0805 (3) | 0.71332 (8) | 0.0342 (6) | |
C11 | 0.3255 (5) | 0.0852 (2) | 0.75441 (8) | 0.0316 (6) | |
C12 | 0.2033 (6) | 0.1676 (2) | 0.78069 (8) | 0.0334 (6) | |
C13 | −0.0014 (6) | 0.2522 (2) | 0.76394 (8) | 0.0378 (7) | |
H13 | −0.0863 | 0.3106 | 0.7810 | 0.045* | |
C14 | 0.1841 (9) | 0.2897 (3) | 0.84206 (9) | 0.0505 (9) | |
H14A | −0.0167 | 0.2901 | 0.8456 | 0.061* | |
H14B | 0.2352 | 0.3650 | 0.8268 | 0.061* | |
C15 | 0.3242 (10) | 0.2938 (4) | 0.88161 (10) | 0.0663 (11) | |
H15A | 0.5245 | 0.2991 | 0.8778 | 0.080* | |
H15B | 0.2650 | 0.3702 | 0.8958 | 0.080* | |
C16 | 0.3517 (11) | 0.0713 (4) | 0.88451 (10) | 0.0739 (12) | |
H16A | 0.3067 | −0.0032 | 0.9005 | 0.089* | |
H16B | 0.5528 | 0.0742 | 0.8814 | 0.089* | |
C17 | 0.2186 (9) | 0.0577 (3) | 0.84467 (9) | 0.0538 (9) | |
H17A | 0.2956 | −0.0165 | 0.8311 | 0.065* | |
H17B | 0.0196 | 0.0444 | 0.8478 | 0.065* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0348 (4) | 0.0369 (4) | 0.0584 (4) | 0.0064 (3) | 0.0008 (3) | 0.0035 (3) |
N1 | 0.0579 (19) | 0.0594 (17) | 0.0416 (14) | −0.0151 (15) | 0.0007 (13) | 0.0019 (12) |
N2 | 0.0553 (17) | 0.0510 (14) | 0.0395 (14) | −0.0093 (14) | −0.0015 (12) | 0.0000 (11) |
N3 | 0.0351 (13) | 0.0353 (12) | 0.0399 (12) | 0.0023 (11) | 0.0019 (10) | 0.0019 (10) |
N4 | 0.0379 (13) | 0.0357 (12) | 0.0451 (14) | 0.0058 (11) | 0.0071 (12) | 0.0019 (10) |
N5 | 0.0495 (15) | 0.0341 (13) | 0.0379 (13) | −0.0002 (12) | 0.0075 (11) | 0.0012 (10) |
O1 | 0.0496 (13) | 0.0460 (11) | 0.0396 (11) | −0.0079 (11) | 0.0004 (9) | −0.0011 (9) |
O2 | 0.0496 (13) | 0.0407 (11) | 0.0455 (11) | 0.0067 (11) | 0.0072 (9) | −0.0061 (9) |
O3 | 0.108 (2) | 0.0816 (18) | 0.0397 (13) | 0.0122 (19) | 0.0130 (14) | 0.0015 (12) |
C1 | 0.062 (2) | 0.072 (2) | 0.0486 (19) | −0.007 (2) | 0.0062 (17) | −0.0053 (17) |
C2 | 0.081 (3) | 0.078 (3) | 0.062 (2) | −0.004 (3) | 0.000 (2) | −0.019 (2) |
C3 | 0.077 (3) | 0.094 (3) | 0.046 (2) | 0.007 (3) | 0.005 (2) | −0.0082 (19) |
C4 | 0.074 (3) | 0.085 (3) | 0.048 (2) | 0.004 (2) | 0.0156 (19) | 0.0109 (19) |
C5 | 0.067 (2) | 0.062 (2) | 0.0454 (19) | −0.0025 (19) | 0.0026 (17) | 0.0083 (15) |
C6 | 0.0483 (19) | 0.0574 (18) | 0.0329 (15) | 0.0057 (16) | −0.0071 (13) | 0.0068 (13) |
C7 | 0.0435 (17) | 0.0503 (17) | 0.0352 (14) | −0.0045 (15) | −0.0040 (13) | 0.0107 (13) |
C8 | 0.0439 (18) | 0.0416 (15) | 0.0345 (14) | 0.0000 (14) | −0.0076 (13) | 0.0044 (12) |
C9 | 0.0376 (16) | 0.0464 (16) | 0.0422 (16) | 0.0002 (15) | −0.0043 (14) | 0.0006 (12) |
C10 | 0.0294 (14) | 0.0295 (13) | 0.0438 (15) | −0.0030 (12) | 0.0085 (12) | −0.0009 (12) |
C11 | 0.0269 (13) | 0.0256 (13) | 0.0423 (15) | −0.0021 (11) | 0.0031 (11) | 0.0022 (11) |
C12 | 0.0333 (14) | 0.0265 (13) | 0.0405 (14) | −0.0049 (12) | 0.0063 (12) | 0.0014 (11) |
C13 | 0.0398 (16) | 0.0288 (13) | 0.0448 (16) | 0.0040 (12) | 0.0096 (13) | −0.0009 (12) |
C14 | 0.066 (2) | 0.0415 (16) | 0.0437 (17) | −0.0024 (16) | 0.0098 (16) | −0.0045 (13) |
C15 | 0.080 (3) | 0.068 (2) | 0.0501 (19) | −0.006 (2) | 0.0091 (19) | −0.0116 (17) |
C16 | 0.100 (4) | 0.075 (2) | 0.0470 (19) | 0.025 (3) | 0.008 (2) | 0.0126 (17) |
C17 | 0.073 (2) | 0.0413 (16) | 0.0475 (18) | 0.0036 (17) | 0.0125 (17) | 0.0095 (14) |
Cl1—C11 | 1.714 (3) | C4—C5 | 1.385 (5) |
N1—C7 | 1.285 (4) | C4—H4 | 0.9300 |
N1—N2 | 1.405 (4) | C5—C6 | 1.384 (5) |
N2—C8 | 1.278 (4) | C5—H5 | 0.9300 |
N3—N4 | 1.345 (3) | C6—C7 | 1.454 (4) |
N3—C10 | 1.375 (4) | C8—C9 | 1.488 (4) |
N3—C9 | 1.457 (4) | C9—H9A | 0.9700 |
N4—C13 | 1.289 (4) | C9—H9B | 0.9700 |
N5—C12 | 1.385 (4) | C10—C11 | 1.438 (4) |
N5—C14 | 1.461 (4) | C11—C12 | 1.365 (4) |
N5—C17 | 1.474 (4) | C12—C13 | 1.435 (4) |
O1—C8 | 1.354 (3) | C13—H13 | 0.9300 |
O1—C7 | 1.363 (4) | C14—C15 | 1.493 (5) |
O2—C10 | 1.228 (3) | C14—H14A | 0.9700 |
O3—C15 | 1.411 (4) | C14—H14B | 0.9700 |
O3—C16 | 1.427 (4) | C15—H15A | 0.9700 |
C1—C2 | 1.373 (5) | C15—H15B | 0.9700 |
C1—C6 | 1.380 (5) | C16—C17 | 1.493 (5) |
C1—H1 | 0.9300 | C16—H16A | 0.9700 |
C2—C3 | 1.380 (6) | C16—H16B | 0.9700 |
C2—H2 | 0.9300 | C17—H17A | 0.9700 |
C3—C4 | 1.351 (6) | C17—H17B | 0.9700 |
C3—H3 | 0.9300 | ||
C7—N1—N2 | 106.3 (3) | C8—C9—H9B | 109.0 |
C8—N2—N1 | 106.0 (2) | H9A—C9—H9B | 107.8 |
N4—N3—C10 | 126.3 (2) | O2—C10—N3 | 119.9 (3) |
N4—N3—C9 | 114.5 (2) | O2—C10—C11 | 125.9 (3) |
C10—N3—C9 | 119.0 (2) | N3—C10—C11 | 114.2 (2) |
C13—N4—N3 | 116.7 (2) | C12—C11—C10 | 122.0 (3) |
C12—N5—C14 | 117.1 (2) | C12—C11—Cl1 | 122.9 (2) |
C12—N5—C17 | 117.2 (2) | C10—C11—Cl1 | 115.0 (2) |
C14—N5—C17 | 111.4 (2) | C11—C12—N5 | 124.4 (3) |
C8—O1—C7 | 102.5 (2) | C11—C12—C13 | 115.1 (2) |
C15—O3—C16 | 110.0 (3) | N5—C12—C13 | 120.5 (2) |
C2—C1—C6 | 120.8 (4) | N4—C13—C12 | 125.5 (2) |
C2—C1—H1 | 119.6 | N4—C13—H13 | 117.2 |
C6—C1—H1 | 119.6 | C12—C13—H13 | 117.2 |
C1—C2—C3 | 119.5 (4) | N5—C14—C15 | 109.8 (3) |
C1—C2—H2 | 120.3 | N5—C14—H14A | 109.7 |
C3—C2—H2 | 120.3 | C15—C14—H14A | 109.7 |
C4—C3—C2 | 120.4 (4) | N5—C14—H14B | 109.7 |
C4—C3—H3 | 119.8 | C15—C14—H14B | 109.7 |
C2—C3—H3 | 119.8 | H14A—C14—H14B | 108.2 |
C3—C4—C5 | 120.8 (4) | O3—C15—C14 | 111.7 (3) |
C3—C4—H4 | 119.6 | O3—C15—H15A | 109.3 |
C5—C4—H4 | 119.6 | C14—C15—H15A | 109.3 |
C6—C5—C4 | 119.5 (4) | O3—C15—H15B | 109.3 |
C6—C5—H5 | 120.3 | C14—C15—H15B | 109.3 |
C4—C5—H5 | 120.3 | H15A—C15—H15B | 107.9 |
C1—C6—C5 | 119.2 (3) | O3—C16—C17 | 112.0 (3) |
C1—C6—C7 | 121.8 (3) | O3—C16—H16A | 109.2 |
C5—C6—C7 | 119.0 (3) | C17—C16—H16A | 109.2 |
N1—C7—O1 | 112.2 (3) | O3—C16—H16B | 109.2 |
N1—C7—C6 | 128.5 (3) | C17—C16—H16B | 109.2 |
O1—C7—C6 | 119.3 (3) | H16A—C16—H16B | 107.9 |
N2—C8—O1 | 113.1 (3) | N5—C17—C16 | 110.2 (3) |
N2—C8—C9 | 128.7 (3) | N5—C17—H17A | 109.6 |
O1—C8—C9 | 118.2 (3) | C16—C17—H17A | 109.6 |
N3—C9—C8 | 112.9 (3) | N5—C17—H17B | 109.6 |
N3—C9—H9A | 109.0 | C16—C17—H17B | 109.6 |
C8—C9—H9A | 109.0 | H17A—C17—H17B | 108.1 |
N3—C9—H9B | 109.0 | ||
C7—N1—N2—C8 | 1.0 (3) | N4—N3—C10—O2 | 179.9 (3) |
C10—N3—N4—C13 | −0.9 (4) | C9—N3—C10—O2 | 5.1 (4) |
C9—N3—N4—C13 | 174.2 (3) | N4—N3—C10—C11 | −0.5 (4) |
C6—C1—C2—C3 | 0.1 (6) | C9—N3—C10—C11 | −175.3 (2) |
C1—C2—C3—C4 | 0.5 (7) | O2—C10—C11—C12 | −178.2 (3) |
C2—C3—C4—C5 | −0.4 (6) | N3—C10—C11—C12 | 2.3 (4) |
C3—C4—C5—C6 | −0.3 (6) | O2—C10—C11—Cl1 | 3.5 (4) |
C2—C1—C6—C5 | −0.8 (5) | N3—C10—C11—Cl1 | −176.01 (19) |
C2—C1—C6—C7 | 178.6 (4) | C10—C11—C12—N5 | 178.4 (2) |
C4—C5—C6—C1 | 0.9 (5) | Cl1—C11—C12—N5 | −3.4 (4) |
C4—C5—C6—C7 | −178.5 (3) | C10—C11—C12—C13 | −2.5 (4) |
N2—N1—C7—O1 | −0.7 (3) | Cl1—C11—C12—C13 | 175.65 (19) |
N2—N1—C7—C6 | 178.0 (3) | C14—N5—C12—C11 | 162.1 (3) |
C8—O1—C7—N1 | 0.1 (3) | C17—N5—C12—C11 | −61.4 (4) |
C8—O1—C7—C6 | −178.7 (3) | C14—N5—C12—C13 | −16.9 (4) |
C1—C6—C7—N1 | 177.5 (3) | C17—N5—C12—C13 | 119.5 (3) |
C5—C6—C7—N1 | −3.1 (5) | N3—N4—C13—C12 | 0.6 (4) |
C1—C6—C7—O1 | −3.9 (5) | C11—C12—C13—N4 | 1.0 (4) |
C5—C6—C7—O1 | 175.5 (3) | N5—C12—C13—N4 | −179.8 (3) |
N1—N2—C8—O1 | −1.0 (3) | C12—N5—C14—C15 | −167.2 (3) |
N1—N2—C8—C9 | 179.3 (3) | C17—N5—C14—C15 | 53.9 (4) |
C7—O1—C8—N2 | 0.6 (3) | C16—O3—C15—C14 | 60.0 (5) |
C7—O1—C8—C9 | −179.7 (2) | N5—C14—C15—O3 | −58.0 (4) |
N4—N3—C9—C8 | 125.5 (3) | C15—O3—C16—C17 | −58.7 (5) |
C10—N3—C9—C8 | −59.1 (3) | C12—N5—C17—C16 | 168.4 (3) |
N2—C8—C9—N3 | −53.4 (4) | C14—N5—C17—C16 | −52.8 (4) |
O1—C8—C9—N3 | 127.0 (3) | O3—C16—C17—N5 | 55.0 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
C17—H17A···Cl1 | 0.97 | 2.57 | 3.252 (3) | 127 |
C14—H14B···O2i | 0.97 | 2.57 | 3.373 (4) | 141 |
C13—H13···O2ii | 0.93 | 2.60 | 3.507 (3) | 165 |
C9—H9A···N2iii | 0.97 | 2.50 | 3.310 (4) | 141 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x, y+1/2, −z+3/2; (iii) x−1, y, z. |
Funding information
Funding for this research was provided by: Shanghai Municipal Education Commission of China; Shanghai University of Engineering Science (award No. 1–5300-16–020113).
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