metal-organic compounds
(Acetato-κO){2-[(2-aminoethyl-κN)disulfanyl]ethanaminium}dichloridozinc(II)
aDepartment of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
*Correspondence e-mail: kuwamuran12@chem.sci.osaka-u.ac.jp
In the title compound, [Zn(C4H13N2S2)(CH3COO)Cl2], the ZnII ion is in a tetrahedral coordination geometry, coordinated by one acetate, two chloride and one 2-[(2-aminoethyl)disulfanyl]ethanaminium ligand, with a Zn—O distance of 1.977 (3) Å, a Zn—N distance of 2.015 (3) Å and Zn—Cl distances of 2.2673 (18) and 2.2688 (15) Å. In the crystal, molecules are self-assembled by N—H⋯Cl hydrogen bonds, leading to a one-dimensional chain structure. The chains interact with each other through N—H⋯O, N—H⋯S, C—H⋯Cl and C—H⋯S hydrogen bonding, completing a three-dimensional hydrogen-bonding network structure.
CCDC reference: 1448151
Structure description
Lead(II), bismuth(III), and copper(I) compounds with 2,2′-dithiobis(ethylamine) can show a variety of extended structural arrangements and are used as ionic conductive and non-linear optical materials (Louvain et al., 2007, 2014; Tamura et al., 2007; Bi et al., 2008).
In the title compound, [Zn(C4H13N2S2)(CH3COO)Cl2], the Zn(II) ion is in a tetrahedral coordination geometry, Fig. 1, coordinated by one acetate, two chloride and one 2-[(2-aminoethyl)disulfanyl]ethanaminium ligands, with a Zn1—O1 distance of 1.977 (3) Å, a Zn1—N1 distance of 2.015 (3) Å and Zn1—Cl distances of 2.2673 (18) and 2.2688 (15) Å. In the crystal, molecules are self-assembled by N—H⋯Cl hydrogen bonds, Table 1, leading to a one-dimensional chain structure. The chains interact with each other through N—H⋯O, N—H⋯S, C—H⋯Cl and C—H⋯S hydrogen bonding, completing a three-dimensional hydrogen-bonding network structure, Fig. 2.
Synthesis and crystallization
To a solution of aminoethanethiol hydrochloride (19.0 mg, 0.167 mmol) in 1.5 ml of methanol was added 2-benzoylpyridine (30.1 mg, 0.164 mmol). The mixture was stirred at room temperature for 1 h. To the resulting solution was added a solution of Zn(CH3COO)2 (36.0 mg, 0.164 mmol) in 5 ml of methanol. The mixture was stirred at room temperature for 1 h. To the colorless solution was added Ni(NO3)2·6H2O (7.1 mg, 0.024 mmol). The red solution was stirred at room temperature for 1.5 h to give a red solution, which was allowed to stand overnight. A small amount of colorless block-shaped crystals of [Zn(C4H13N2S2)(C2H3O2)Cl2] was obtained.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2
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Structural data
CCDC reference: 1448151
10.1107/S241431461600105X/gw2155sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S241431461600105X/gw2155Isup2.hkl
To a solution of aminoethanethiol hydrochloride (19.0 mg, 0.167 mmol) in 1.5 ml of methanol was added 2-benzoylpyridine (30.1 mg, 0.164 mmol). The mixture was stirred at room temperature for 1 h. To the resulting solution was added a solution of Zn(CH3COO)2 (36.0 mg, 0.164 mmol) in 5 ml of methanol. The mixture was stirred at room temperature for 1 h. To the colorless solution was added Ni(NO3)2·6H2O (7.1 mg, 0.024 mmol). The red solution was stirred at room temperature for 1.5 h to give a red solution, which was allowed to stand overnight. A small amount of colorless block crystals of [ZnCl2(CH3COO)(C4H13N2S2)] was obtained.
C-bound H atoms were placed at calculated positions (C—H = 0.98 or 0.99 Å) and refined as riding, with Uiso(H) = 1.2Ueq(Cmethylene) or 1.5Ueq(Cmethyl), respectively. N-bound H atoms were placed at calculated positions (N—H = 0.91 Å) and refined as riding, with Uiso(H) = 1.2Ueq(Namine) or 1.5Ueq(Nammonium).
To a solution of aminoethanethiol hydrochloride (19.0 mg, 0.167 mmol) in 1.5 ml of methanol was added 2-benzoylpyridine (30.1 mg, 0.164 mmol). The mixture was stirred at room temperature for 1 h. To the resulting solution was added a solution of Zn(CH3COO)2 (36.0 mg, 0.164 mmol) in 5 ml of methanol. The mixture was stirred at room temperature for 1 h. To the colorless solution was added Ni(NO3)2·6H2O (7.1 mg, 0.024 mmol). The red solution was stirred at room temperature for 1.5 h to give a red solution, which was allowed to stand overnight. A small amount of colorless block-shaped crystals of [ZnCl2(CH3COO)(C4H13N2S2)] was obtained.
Lead(II), bismuth(III), and copper(I) compounds with 2,2'-dithiobis(ethylamine) can show a variety of extended structural arrangements and are used as ionic conductive and non-linear optical materials (Louvain et al., 2007, 2014; Tamura et al., 2007; Bi et al., 2008).
In the title compound, [Zn(C4H13N2S2)(CH3COO)Cl2], the Zn(II) ion is in a tetrahedral coordination geometry, Fig. 1, coordinated by one acetate, two chloride and one 2-[(2-aminoethyl)disulfanyl]ethanaminium ligands, with a Zn1—O1 distance of 1.977 (3) Å, a Zn1—N1 distance of 2.015 (3) Å and Zn1—Cl distances of 2.2673 (18) and 2.2688 (15) Å. In the crystal, molecules are self-assembled by N—H···Cl hydrogen bonds, Table 1, leading to a one-dimensional chain structure. The chains interact with each other through N—H···O, N—H···S, C—H···Cl and C—H···S hydrogen bonding, completing a three-dimensional hydrogen-bonding network structure, Fig. 2.
Data collection: PROCESS-AUTO (Rigaku, 2000); cell
PROCESS-AUTO (Rigaku, 2000); data reduction: PROCESS-AUTO (Rigaku, 2000); program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: Yadokari-XG (Kabuto et al., 2009); software used to prepare material for publication: Yadokari-XG (Kabuto et al., 2009).Fig. 1. The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are drawn as spheres of arbitrary radii. | |
Fig. 2. The crystal packing of the title compound viewed along a axis. Hydrogen bonds are shown as dashed lines. |
[Zn(C4H13N2S2)(C2H3O2)Cl2] | Z = 2 |
Mr = 348.60 | F(000) = 356 |
Triclinic, P1 | Dx = 1.718 Mg m−3 |
a = 6.907 (4) Å | Mo Kα radiation, λ = 0.71075 Å |
b = 10.320 (7) Å | Cell parameters from 1503 reflections |
c = 10.707 (7) Å | θ = 3.1–27.7° |
α = 68.331 (14)° | µ = 2.51 mm−1 |
β = 81.936 (15)° | T = 200 K |
γ = 71.917 (12)° | Block, colorless |
V = 674.0 (8) Å3 | 0.20 × 0.10 × 0.10 mm |
Rigaku R-AXIS 7 diffractometer | 2471 reflections with I > 2σ(I) |
Detector resolution: 10.00 pixels mm-1 | Rint = 0.039 |
/w scans | θmax = 27.5°, θmin = 3.1° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −8→8 |
Tmin = 0.466, Tmax = 0.806 | k = −13→13 |
5387 measured reflections | l = −13→13 |
3039 independent reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.049 | H-atom parameters constrained |
wR(F2) = 0.127 | w = 1/[σ2(Fo2) + (0.0573P)2 + 0.149P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max = 0.001 |
3039 reflections | Δρmax = 1.20 e Å−3 |
138 parameters | Δρmin = −0.52 e Å−3 |
[Zn(C4H13N2S2)(C2H3O2)Cl2] | γ = 71.917 (12)° |
Mr = 348.60 | V = 674.0 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.907 (4) Å | Mo Kα radiation |
b = 10.320 (7) Å | µ = 2.51 mm−1 |
c = 10.707 (7) Å | T = 200 K |
α = 68.331 (14)° | 0.20 × 0.10 × 0.10 mm |
β = 81.936 (15)° |
Rigaku R-AXIS 7 diffractometer | 3039 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 2471 reflections with I > 2σ(I) |
Tmin = 0.466, Tmax = 0.806 | Rint = 0.039 |
5387 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.10 | Δρmax = 1.20 e Å−3 |
3039 reflections | Δρmin = −0.52 e Å−3 |
138 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.37629 (6) | 0.52770 (4) | 0.71825 (4) | 0.03651 (17) | |
Cl1 | 0.46685 (15) | 0.28147 (10) | 0.79271 (10) | 0.0476 (3) | |
Cl2 | 0.64255 (14) | 0.61874 (10) | 0.62265 (10) | 0.0440 (3) | |
N1 | 0.1676 (4) | 0.5888 (3) | 0.5784 (3) | 0.0355 (7) | |
H1A | 0.2094 | 0.5278 | 0.5303 | 0.043* | |
H1B | 0.0485 | 0.5755 | 0.6218 | 0.043* | |
N2 | −0.5827 (5) | 1.2558 (3) | 0.1010 (3) | 0.0407 (7) | |
H2A | −0.7085 | 1.2940 | 0.1325 | 0.061* | |
H2B | −0.5815 | 1.2885 | 0.0095 | 0.061* | |
H2C | −0.4884 | 1.2836 | 0.1288 | 0.061* | |
S1 | −0.03739 (16) | 0.94437 (11) | 0.24546 (10) | 0.0488 (3) | |
S2 | −0.26116 (16) | 1.05857 (11) | 0.34154 (11) | 0.0472 (3) | |
C1 | 0.1253 (6) | 0.7383 (4) | 0.4832 (4) | 0.0395 (9) | |
H1 | 0.2556 | 0.7629 | 0.4521 | 0.047* | |
H2 | 0.0433 | 0.8054 | 0.5297 | 0.047* | |
C2 | 0.0112 (6) | 0.7605 (4) | 0.3617 (4) | 0.0397 (9) | |
H3 | −0.1198 | 0.7370 | 0.3924 | 0.048* | |
H4 | 0.0926 | 0.6931 | 0.3153 | 0.048* | |
O1 | 0.3115 (4) | 0.5845 (3) | 0.8799 (2) | 0.0426 (6) | |
C3 | −0.4926 (6) | 1.0338 (4) | 0.3006 (4) | 0.0474 (10) | |
H5 | −0.4811 | 0.9287 | 0.3338 | 0.057* | |
H6 | −0.6103 | 1.0806 | 0.3486 | 0.057* | |
C5 | 0.1261 (5) | 0.6340 (4) | 0.9035 (4) | 0.0365 (8) | |
O2 | −0.0136 (4) | 0.6437 (3) | 0.8396 (3) | 0.0526 (7) | |
C4 | −0.5334 (6) | 1.0955 (4) | 0.1531 (4) | 0.0432 (9) | |
H7 | −0.4119 | 1.0551 | 0.1037 | 0.052* | |
H8 | −0.6486 | 1.0662 | 0.1372 | 0.052* | |
C6 | 0.0799 (6) | 0.6893 (5) | 1.0234 (4) | 0.0483 (10) | |
H9 | 0.0993 | 0.7864 | 0.9946 | 0.072* | |
H10 | 0.1723 | 0.6226 | 1.0963 | 0.072* | |
H11 | −0.0614 | 0.6939 | 1.0554 | 0.072* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0315 (3) | 0.0388 (3) | 0.0309 (3) | −0.00430 (19) | −0.00581 (19) | −0.0056 (2) |
Cl1 | 0.0531 (6) | 0.0391 (5) | 0.0416 (5) | −0.0057 (5) | −0.0049 (5) | −0.0087 (4) |
Cl2 | 0.0361 (5) | 0.0510 (6) | 0.0440 (6) | −0.0130 (4) | 0.0023 (4) | −0.0161 (5) |
N1 | 0.0299 (15) | 0.0360 (16) | 0.0321 (16) | −0.0050 (13) | −0.0049 (13) | −0.0041 (13) |
N2 | 0.0350 (16) | 0.0451 (18) | 0.0339 (17) | −0.0058 (14) | −0.0067 (14) | −0.0071 (14) |
S1 | 0.0419 (5) | 0.0464 (6) | 0.0409 (6) | −0.0078 (5) | −0.0062 (5) | 0.0021 (5) |
S2 | 0.0519 (6) | 0.0395 (5) | 0.0438 (6) | −0.0048 (5) | −0.0164 (5) | −0.0087 (4) |
C1 | 0.0365 (19) | 0.0343 (19) | 0.040 (2) | −0.0060 (16) | −0.0127 (17) | −0.0031 (17) |
C2 | 0.040 (2) | 0.039 (2) | 0.034 (2) | −0.0057 (17) | −0.0078 (16) | −0.0068 (16) |
O1 | 0.0351 (14) | 0.0494 (16) | 0.0365 (15) | −0.0056 (12) | −0.0047 (12) | −0.0111 (13) |
C3 | 0.043 (2) | 0.046 (2) | 0.046 (2) | −0.0115 (18) | 0.0021 (19) | −0.0107 (19) |
C5 | 0.0272 (18) | 0.0367 (19) | 0.0322 (19) | −0.0080 (15) | −0.0094 (16) | 0.0053 (15) |
O2 | 0.0388 (15) | 0.0707 (19) | 0.0471 (17) | −0.0110 (14) | −0.0017 (13) | −0.0225 (15) |
C4 | 0.041 (2) | 0.042 (2) | 0.043 (2) | −0.0066 (17) | −0.0096 (18) | −0.0110 (18) |
C6 | 0.040 (2) | 0.059 (2) | 0.041 (2) | −0.0099 (19) | −0.0010 (18) | −0.0154 (19) |
Zn1—O1 | 1.977 (3) | C1—H1 | 0.9900 |
Zn1—N1 | 2.015 (3) | C1—H2 | 0.9900 |
Zn1—Cl1 | 2.2673 (18) | C2—H3 | 0.9900 |
Zn1—Cl2 | 2.2688 (15) | C2—H4 | 0.9900 |
N1—C1 | 1.465 (4) | O1—C5 | 1.251 (4) |
N1—H1A | 0.9100 | C3—C4 | 1.500 (5) |
N1—H1B | 0.9100 | C3—H5 | 0.9900 |
N2—C4 | 1.478 (5) | C3—H6 | 0.9900 |
N2—H2A | 0.9100 | C5—O2 | 1.218 (4) |
N2—H2B | 0.9100 | C5—C6 | 1.545 (5) |
N2—H2C | 0.9100 | C4—H7 | 0.9900 |
S1—C2 | 1.800 (4) | C4—H8 | 0.9900 |
S1—S2 | 2.0384 (17) | C6—H9 | 0.9800 |
S2—C3 | 1.829 (4) | C6—H10 | 0.9800 |
C1—C2 | 1.524 (5) | C6—H11 | 0.9800 |
O1—Zn1—N1 | 121.89 (12) | C1—C2—H3 | 109.3 |
O1—Zn1—Cl1 | 106.49 (8) | S1—C2—H3 | 109.3 |
N1—Zn1—Cl1 | 104.45 (9) | C1—C2—H4 | 109.3 |
O1—Zn1—Cl2 | 102.22 (8) | S1—C2—H4 | 109.3 |
N1—Zn1—Cl2 | 109.45 (10) | H3—C2—H4 | 108.0 |
Cl1—Zn1—Cl2 | 112.50 (5) | C5—O1—Zn1 | 115.4 (2) |
C1—N1—Zn1 | 117.2 (2) | C4—C3—S2 | 113.7 (3) |
C1—N1—H1A | 108.0 | C4—C3—H5 | 108.8 |
Zn1—N1—H1A | 108.0 | S2—C3—H5 | 108.8 |
C1—N1—H1B | 108.0 | C4—C3—H6 | 108.8 |
Zn1—N1—H1B | 108.0 | S2—C3—H6 | 108.8 |
H1A—N1—H1B | 107.2 | H5—C3—H6 | 107.7 |
C4—N2—H2A | 109.5 | O2—C5—O1 | 125.7 (4) |
C4—N2—H2B | 109.5 | O2—C5—C6 | 119.8 (3) |
H2A—N2—H2B | 109.5 | O1—C5—C6 | 114.5 (3) |
C4—N2—H2C | 109.5 | N2—C4—C3 | 111.7 (3) |
H2A—N2—H2C | 109.5 | N2—C4—H7 | 109.3 |
H2B—N2—H2C | 109.5 | C3—C4—H7 | 109.3 |
C2—S1—S2 | 103.27 (14) | N2—C4—H8 | 109.3 |
C3—S2—S1 | 102.93 (14) | C3—C4—H8 | 109.3 |
N1—C1—C2 | 112.4 (3) | H7—C4—H8 | 107.9 |
N1—C1—H1 | 109.1 | C5—C6—H9 | 109.5 |
C2—C1—H1 | 109.1 | C5—C6—H10 | 109.5 |
N1—C1—H2 | 109.1 | H9—C6—H10 | 109.5 |
C2—C1—H2 | 109.1 | C5—C6—H11 | 109.5 |
H1—C1—H2 | 107.9 | H9—C6—H11 | 109.5 |
C1—C2—S1 | 111.6 (2) | H10—C6—H11 | 109.5 |
Zn1—N1—C1—C2 | 164.8 (2) | Zn1—O1—C5—O2 | 3.3 (5) |
N1—C1—C2—S1 | −179.5 (3) | Zn1—O1—C5—C6 | −175.2 (2) |
S2—S1—C2—C1 | −73.0 (3) | S2—C3—C4—N2 | −67.0 (4) |
S1—S2—C3—C4 | −62.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cl2i | 0.91 | 2.53 | 3.436 (4) | 172 |
N1—H1B···Cl2ii | 0.91 | 2.70 | 3.522 (4) | 151 |
N1—H1B···O2 | 0.91 | 2.62 | 3.075 (4) | 112 |
N2—H2A···O2iii | 0.91 | 1.84 | 2.730 (4) | 164 |
N2—H2B···Cl1iv | 0.91 | 2.32 | 3.190 (4) | 159 |
N2—H2C···S2 | 0.91 | 2.81 | 3.261 (3) | 112 |
N2—H2C···O1v | 0.91 | 2.06 | 2.922 (4) | 157 |
C2—H3···Cl2ii | 0.99 | 2.85 | 3.705 (4) | 145 |
C3—H5···Cl1vi | 0.99 | 2.92 | 3.690 (5) | 135 |
C4—H7···S1 | 0.99 | 2.88 | 3.412 (4) | 115 |
C6—H9···S1v | 0.98 | 2.97 | 3.765 (5) | 139 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y, z; (iii) −x−1, −y+2, −z+1; (iv) x−1, y+1, z−1; (v) −x, −y+2, −z+1; (vi) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Cl2i | 0.91 | 2.53 | 3.436 (4) | 171.8 |
N1—H1B···Cl2ii | 0.91 | 2.70 | 3.522 (4) | 151.0 |
N1—H1B···O2 | 0.91 | 2.62 | 3.075 (4) | 111.8 |
N2—H2A···O2iii | 0.91 | 1.84 | 2.730 (4) | 163.6 |
N2—H2B···Cl1iv | 0.91 | 2.32 | 3.190 (4) | 159.1 |
N2—H2C···S2 | 0.91 | 2.81 | 3.261 (3) | 112.2 |
N2—H2C···O1v | 0.91 | 2.06 | 2.922 (4) | 156.6 |
C2—H3···Cl2ii | 0.99 | 2.85 | 3.705 (4) | 144.5 |
C3—H5···Cl1vi | 0.99 | 2.92 | 3.690 (5) | 134.9 |
C4—H7···S1 | 0.99 | 2.88 | 3.412 (4) | 114.6 |
C6—H9···S1v | 0.98 | 2.97 | 3.765 (5) | 139.3 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y, z; (iii) −x−1, −y+2, −z+1; (iv) x−1, y+1, z−1; (v) −x, −y+2, −z+1; (vi) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C4H13N2S2)(C2H3O2)Cl2] |
Mr | 348.60 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 200 |
a, b, c (Å) | 6.907 (4), 10.320 (7), 10.707 (7) |
α, β, γ (°) | 68.331 (14), 81.936 (15), 71.917 (12) |
V (Å3) | 674.0 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.51 |
Crystal size (mm) | 0.20 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Rigaku R-AXIS 7 |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.466, 0.806 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5387, 3039, 2471 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.127, 1.10 |
No. of reflections | 3039 |
No. of parameters | 138 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.20, −0.52 |
Computer programs: PROCESS-AUTO (Rigaku, 2000), SHELXS2014 (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2015), Yadokari-XG (Kabuto et al., 2009).
Acknowledgements
This work was supported by CREST, JST, and a Grant-in-Aid for Science Research No. 25600005 from the Ministry of Education, Culture, Sports, Science and Technology of Japan. NK acknowledges support from the Kurita Water and Environment Foundation.
References
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