organic compounds
5-Methyl-2-nitroaniline
aDepartment of Chemistry and Physics, Southeast Missouri State University, Cape Girardeau, MO 63701, USA
*Correspondence e-mail: [email protected]
The bond lengths and angles within the title molecule, C7H8N2O2, conform to average values for other 5-substituted-2-nitroanilines, and with those calculated by a DFT geometry optimization. The short C—NH2 bond length of 1.3469 (12) Å is indicative of substantial involvement of the aniline N-atom in the aromatic π bonding system of the ring. In the extended structure, N—H⋯O hydrogen bonds link the molecules into [001] tapes, which aggregate into zipper-like folded ribbons. Layers of parallel ribbons stack along a to complete the structure.
Keywords: crystal structure; hydrogen bonding; DFT geometry optimization.
CCDC reference: 2481714
Structure description
The title molecule, C7H8N2O2 (I), is approximately planar with the ring C atoms exhibiting an average deviation of 0.003 (2) Å from the mean plane (Fig. 1
). The molecular plane lies closest to the bc plane of the but is canted to form an angle of 17.25° between normals. The geometry about both N atoms is almost planar so that sp2 can be reasonably assigned. The aniline nitrogen atom (N1) shows the most pyramidalization with a distance of 0.0792 (1) Å of this atom from the mean plane of its attached H atoms and C1, versus 0.0005 (1) Å for N2. The amino and nitro group planes make twist angles of 5.1 (7) and 3.87 (4)°, respectively, with respect to the mean plane of the C1–C6 ring. One H atom of the amine group makes an intramolecular hydrogen bond to an O atom of the nitro group (Table 1
). The nitro group geometry is uniform with the N—O distances agreeing within 1 s.u. of each other, and in agreement with the mean N—O bond length for 5-substituted-2-nitroanilines reported in the Cambridge Structural Database [1.233 (23) Å; 35 hits, CSD version 5.45, June 2024 update; Groom et al., 2016
]. Other geometrical parameters agree well with average values from the CSD. The nitro group bond angles are close to 120° with the O—N—O angle slightly larger [121.20 (9)° for O—N—O and 119.4 (9)° for C—N—O for CSD mean values]. The C1—N1 bond length of 1.3469 (12) Å in (I) is significantly shorter than the sum of the covalent radii of 1.44 Å but similar to the CSD mean of 1.341 (25) Å for a Car—NH2 bond, a familiar situation in aniline compounds where the nominal lone pair of the nitrogen atom participates in the aromatic π-bonding network of the ring (Morrison & Boyd, 1976
). The C2—N2 distance to the nitro group is only slightly shorter than the sum of the covalently radii [CSD mean = 1.422 (25) Å].
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| Figure 1 Displacement ellipsoid plot at the 50% probability level of (I) with atom labels. The intramolecular N—H⋯O hydrogen bond is indicated by a dashed line. |
A DFT geometry optimization of the title molecule in vacuo [B3LYP, 6311+G(d,p); GAMESS (Schmidt et al., 1993
)] provides geometric parameters in broad agreement with experimental values. Of note, the optimized aniline C—N distance is only 0.01 Å longer than the experimental value. In addition, there is significant contribution of the p-orbital on the N atom to the delocalized π-bonding system of the aromatic ring in the highest occupied molecular orbital (HOMO), as shown in the plot in Fig. 2
. The nitro group exhibits the greatest deviation from the experimental values with the C—N bond longer by 0.024 Å and unequal N—O bond lengths (the O atom involved in intramolecular hydrogen bonding is 0.016 Å longer). A MOL file containing the optimized geometry is available in supporting information.
| Figure 2 Plot of the highest occupied molecular orbital for (I) from the DFT geometry optimization. |
In the extended structure of (I), intermolecular hydrogen bonding between H1 and O1 of a neighboring molecule links molecules into tapes propagating parallel to c. The opposite polarity of the amino- and nitro- groups, as shown in the electrostatic potential plot in Fig. 3
, generates a zipper-like folded ribbon between two neighboring tapes to place groups of opposite polarity in neighboring tapes in close proximity. The hydrophobic methyl groups from neighboring ribbons abut to generate corrugated sheets in the bc plane. These sheets are stacked along a with only slight overlap between phenyl rings in neighboring sheets and with the fold of polar groups in one sheet overlying the fold of hydrophobic groups in the neighboring sheets. A table of hydrogen-bond parameters is presented in Table 1
, a packing diagram for a single sheet is presented in Fig. 4
, and a unit-cell packing diagram is presented in Fig. 5
.
| Figure 3 Electrostatic potential plot for (I) from the DFT geometry optimization. Red indicates accumulation of negative charge and blue accumulation of positive charge. |
| Figure 4 Packing diagram for a corrugated sheet of molecules of (I) viewed down a with b horizontal and c vertical. Atoms are drawn as circles of arbitrary radii, intramolecular hydrogen bonds are indicated by thick dashed lines, and intermolecular hydrogen bonds are indicated by thin dashed lines. |
| | Figure 5 Unit-cell packing diagram for (I) viewed down c with a vertical and b horizontal. Atoms are drawn as circles of arbitrary radii. |
Other known methyl-2-nitroanilines exhibit polymorphs with different hydrogen-bonding arrangements. For the 4-methyl derivative, two polymorphs crystallized from different solvents are known. The first is in monoclinic C2/c with Z′ = 1 (CSD refcode TEHGUI/02; Ellena et al., 1996
; Nigam & Murty, 1965
; from ethanol) while the other is in triclinic P with Z′ = 2 (TEHGUI01/03; Cannon et al., 2001
; Aguirre et al., 2024
; from acetone). The 6-methyl derivative likewise occurs in two polymorphs. Both crystallize in monoclinic P21/c but differ in unit-cell volumes by a factor of approximately 2 [KEFYOK (Jing et al., 2006
) and KEFYOK01/KEFYOK02 (Callear & Hursthouse, 2009
)]. The Z′ = 2 polymorph is crystallized from N,N-dimethylformamide (KEFYOK) or methanol/imidazolidine-2-thione (KEFYOK01) while the Z′ = 1 polymorph crystallizes from methanol/benzenesulfonic acid. The structure of the 3-methyl derivative remains unreported while a systematic search for polymorphs of the title compound has not been conducted.
Bifurcated N—H⋯(O,O) hydrogen bonding from an amino proton to the nitro O atoms is a common motif in the structures of 2-nitro anilines. Asymmetric bifurcated hydrogen bonding is observed in KEFYOK/01 and TEHGUI, while a mix of symmetric, bifurcated hydrogen bonding and direct hydrogen bonding is found for symmetry-unique molecules in TEHGUI01. Extended molecular arrangements in these structures consist of spiral, square columns in KEFYOK/01 but planar layers in TEHGUI and TEHGUI01. The extended structure of KEFYOK02 provides the greatest similarity to the title compound with direct intermolecular N—H⋯O hydrogen bonding linking molecules into corrugated layers, albeit with hydrogen bonding now between molecules on opposite sides of the corrugation fold. Placement of the methyl group adjacent to the amino group eliminates the need for a hydrophobic fold, as in the title structure, but also results in a longer H⋯O hydrogen bond contact distance of 2.32 Å.
Synthesis and crystallization
5-Methyl-2-nitroaniline (99.9%, AmBeed) was recrystallized from ethanol solution by slow evaporation to yield diffraction-quality crystals.
Refinement
Crystal data, data collection, and structure details are listed in Table 2
. Structure solution and initial refinement using an independent atom model occurred within the Bruker SHELXTL software package (Version 2016/6). A disordered model for the methyl H atoms resulted in a higher agreement factor, thus the ordered model was retained. Final structure occurred within the OLEX2–1.5 system via Hirshfeld atom using NoSpherA2 (Kleemiss et al., 2021
; Midgley et al., 2021
) with non-spherical atomic form factors derived from electron density determined by DFT calculations using ORCA 5.0 (B3LYP functional, def2-SVP basis set; Neese, 2022). All atoms were refined anisotropically. This resulted in a slightly underdetermined data:parameter ratio (9.83:1) as a consequence of pursuing the non-spherical Four low angle reflections with Fo << Fc were presumed to be blocked by the beam catcher and omitted from the refinement.
|
Structural data
CCDC reference: 2481714
contains datablock I. DOI: https://doi.org/10.1107/S2414314625007473/hb4532sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314625007473/hb4532Isup2.hkl
MOL file from quantum mechanical geometry optimization. DOI: https://doi.org/10.1107/S2414314625007473/hb4532sup3.mol
Supporting information file. DOI: https://doi.org/10.1107/S2414314625007473/hb4532Isup4.cml
| C7H8N2O2 | F(000) = 320.241 |
| Mr = 152.15 | Dx = 1.377 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.4151 (7) Å | Cell parameters from 7279 reflections |
| b = 15.8116 (16) Å | θ = 2.6–26.9° |
| c = 7.1225 (7) Å | µ = 0.10 mm−1 |
| β = 118.524 (3)° | T = 295 K |
| V = 733.71 (13) Å3 | Irregular, yellow |
| Z = 4 | 0.23 × 0.21 × 0.10 mm |
| Bruker APEXII CCD diffractometer | 1311 reflections with I ≥ 2σ(I) |
| φ and ω scans | Rint = 0.035 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 27.6°, θmin = 3.5° |
| Tmin = 0.670, Tmax = 0.746 | h = −9→9 |
| 19599 measured reflections | k = −20→20 |
| 1700 independent reflections | l = −9→9 |
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | All H-atom parameters refined |
| R[F2 > 2σ(F2)] = 0.033 | w = 1/[σ2(Fo2) + (0.0097P)2 + 0.0677P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.055 | (Δ/σ)max = 0.0004 |
| S = 1.12 | Δρmax = 0.18 e Å−3 |
| 1700 reflections | Δρmin = −0.13 e Å−3 |
| 173 parameters | Extinction correction: Zachariasen, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.027 (3) |
| 0 constraints |
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.66254 (18) | 0.62975 (7) | 0.90340 (19) | 0.0615 (3) | |
| H1 | 0.675 (2) | 0.6288 (8) | 1.045 (2) | 0.091 (5) | |
| H2 | 0.661 (2) | 0.6839 (9) | 0.834 (2) | 0.084 (5) | |
| C1 | 0.70816 (13) | 0.55938 (5) | 0.82802 (12) | 0.0392 (2) | |
| C2 | 0.73877 (13) | 0.55572 (5) | 0.64725 (12) | 0.0396 (2) | |
| N2 | 0.72344 (13) | 0.62938 (6) | 0.52484 (12) | 0.0551 (2) | |
| O1 | 0.76280 (14) | 0.62386 (6) | 0.37703 (13) | 0.0905 (3) | |
| O2 | 0.67125 (14) | 0.69659 (5) | 0.56884 (13) | 0.0803 (3) | |
| C3 | 0.78714 (15) | 0.47926 (6) | 0.58181 (16) | 0.0496 (3) | |
| H3 | 0.8103 (18) | 0.4805 (7) | 0.4418 (18) | 0.082 (4) | |
| C4 | 0.80415 (16) | 0.40613 (7) | 0.69101 (17) | 0.0553 (3) | |
| H4 | 0.842 (2) | 0.3482 (7) | 0.6426 (19) | 0.100 (4) | |
| C5 | 0.77246 (14) | 0.40677 (6) | 0.87032 (15) | 0.0503 (3) | |
| C51 | 0.7879 (3) | 0.32578 (11) | 0.9867 (3) | 0.0807 (5) | |
| H51a | 0.792 (4) | 0.3353 (11) | 1.130 (3) | 0.152 (9) | |
| H51b | 0.669 (3) | 0.2851 (10) | 0.901 (3) | 0.168 (9) | |
| H51c | 0.927 (3) | 0.2944 (10) | 1.030 (4) | 0.149 (8) | |
| C6 | 0.72643 (15) | 0.48186 (6) | 0.93469 (15) | 0.0459 (2) | |
| H6 | 0.7037 (17) | 0.4837 (6) | 1.0718 (17) | 0.077 (3) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0848 (7) | 0.0497 (6) | 0.0571 (6) | 0.0121 (5) | 0.0395 (6) | −0.0076 (5) |
| H1 | 0.125 (12) | 0.087 (10) | 0.073 (9) | 0.007 (8) | 0.058 (9) | −0.021 (8) |
| H2 | 0.106 (11) | 0.064 (9) | 0.078 (10) | 0.014 (9) | 0.042 (8) | 0.012 (8) |
| C1 | 0.0478 (5) | 0.0363 (5) | 0.0351 (4) | 0.0018 (4) | 0.0212 (4) | −0.0017 (4) |
| C2 | 0.0451 (5) | 0.0400 (5) | 0.0341 (4) | −0.0007 (4) | 0.0193 (4) | 0.0004 (4) |
| N2 | 0.0615 (6) | 0.0553 (5) | 0.0456 (5) | −0.0038 (4) | 0.0231 (4) | 0.0142 (4) |
| O1 | 0.1153 (7) | 0.1071 (7) | 0.0678 (5) | 0.0005 (5) | 0.0588 (5) | 0.0299 (5) |
| O2 | 0.1099 (7) | 0.0440 (4) | 0.0839 (6) | 0.0059 (4) | 0.0437 (5) | 0.0219 (4) |
| C3 | 0.0590 (6) | 0.0520 (6) | 0.0431 (5) | 0.0012 (5) | 0.0286 (5) | −0.0096 (5) |
| H3 | 0.110 (10) | 0.086 (9) | 0.074 (8) | 0.006 (7) | 0.064 (8) | −0.011 (7) |
| C4 | 0.0630 (7) | 0.0389 (6) | 0.0619 (6) | 0.0029 (5) | 0.0282 (5) | −0.0108 (5) |
| H4 | 0.131 (11) | 0.059 (8) | 0.113 (10) | 0.013 (7) | 0.060 (9) | −0.027 (7) |
| C5 | 0.0496 (5) | 0.0367 (5) | 0.0575 (6) | −0.0019 (4) | 0.0199 (5) | 0.0058 (4) |
| C51 | 0.0763 (11) | 0.0490 (9) | 0.1010 (12) | −0.0029 (7) | 0.0296 (10) | 0.0278 (8) |
| H51a | 0.23 (2) | 0.089 (13) | 0.143 (16) | −0.003 (14) | 0.093 (17) | 0.043 (12) |
| H51b | 0.113 (14) | 0.101 (12) | 0.20 (2) | −0.055 (11) | 0.005 (12) | 0.060 (12) |
| H51c | 0.102 (14) | 0.101 (12) | 0.24 (2) | 0.036 (10) | 0.075 (14) | 0.080 (13) |
| C6 | 0.0538 (6) | 0.0460 (6) | 0.0412 (5) | 0.0000 (4) | 0.0252 (5) | 0.0061 (4) |
| H6 | 0.106 (9) | 0.073 (8) | 0.066 (7) | 0.005 (6) | 0.051 (7) | 0.019 (6) |
| N1—H1 | 0.968 (13) | C3—C4 | 1.3653 (14) |
| N1—H2 | 0.987 (14) | C4—H4 | 1.062 (10) |
| N1—C1 | 1.3469 (12) | C4—C5 | 1.4046 (14) |
| C1—C2 | 1.4113 (11) | C5—C51 | 1.4997 (16) |
| C1—C6 | 1.4141 (12) | C51—H51a | 1.021 (19) |
| C2—N2 | 1.4265 (11) | C51—H51b | 1.025 (15) |
| N2—O1 | 1.2225 (10) | C51—H51c | 1.048 (16) |
| N2—O2 | 1.2220 (11) | C5—C6 | 1.3732 (13) |
| C2—C3 | 1.4025 (12) | C6—H6 | 1.068 (10) |
| C3—H3 | 1.090 (10) | ||
| H1—N1—H2 | 120.7 (11) | C3—C4—H4 | 120.8 (7) |
| C1—N1—H1 | 119.0 (8) | C5—C4—H4 | 119.1 (7) |
| C1—N1—H2 | 117.5 (8) | C3—C4—C5 | 120.12 (10) |
| C2—C1—N1 | 125.31 (9) | C4—C5—C51 | 119.64 (13) |
| C6—C1—N1 | 118.67 (9) | C6—C5—C51 | 121.29 (13) |
| C6—C1—C2 | 116.02 (8) | C4—C5—C6 | 119.08 (9) |
| C1—C2—N2 | 121.56 (8) | C5—C51—H51a | 112.7 (11) |
| C1—C2—C3 | 121.11 (8) | C5—C51—H51b | 113.0 (9) |
| C3—C2—N2 | 117.32 (8) | C5—C51—H51c | 111.8 (9) |
| O1—N2—C2 | 119.07 (9) | H51a—C51—H51b | 107.0 (14) |
| O2—N2—C2 | 119.73 (8) | H51a—C51—H51c | 102.8 (14) |
| O1—N2—O2 | 121.20 (9) | H51b—C51—H51c | 108.9 (14) |
| C2—C3—H3 | 117.7 (6) | C5—C6—C1 | 123.05 (9) |
| C4—C3—H3 | 121.6 (6) | C1—C6—H6 | 116.9 (5) |
| C2—C3—C4 | 120.62 (9) | C5—C6—H6 | 120.1 (5) |
| N1—C1—C2—N2 | 0.08 (11) | C1—C6—C5—C4 | 0.30 (11) |
| N1—C1—C2—C3 | 179.60 (10) | C1—C6—C5—C51 | −179.25 (12) |
| N1—C1—C6—C5 | −179.98 (9) | C2—C3—C4—C5 | 0.23 (11) |
| C1—C2—N2—O1 | 175.85 (9) | C3—C4—C5—C51 | 178.91 (12) |
| C1—C2—N2—O2 | −4.24 (10) | C3—C4—C5—C6 | −0.65 (12) |
| C1—C2—C3—C4 | 0.54 (10) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H2···O2 | 0.987 (14) | 1.934 (14) | 2.6356 (15) | 125.7 (10) |
| N1—H1···O1i | 0.968 (13) | 2.133 (13) | 3.0897 (14) | 169.4 (12) |
| Symmetry code: (i) x, y, z+1. |
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