organic compounds
(E)-5-(4-Methoxyphenyl)-N′-(2-oxoindolin-3-ylidene)-1-phenyl-1H-pyrazole-3-carbohydrazide
aApplied Organic Chemistry Department, Chemical Industries Research Institute, National Research Centre, Dokki, Giza 12622, Egypt, bMaster of Pharmaceutical Sciences Program, California Northstate University, Elk Grove, CA 95757, USA, cDepartment of Pharmaceutical Organic Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura 35516, Egypt, dDepartment of Pesticide Chemistry, National Research Centre, Dokki, Giza 12622, Egypt, eDepartment of Chemistry, College of Science, Al-Nahrain University, Baghdad 64021, Iraq, fSchool of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, United Kingdom, and gDepartment of Optometry, College of Applied Medical Sciences, King Saud University, Riyadh 11433, Saudi Arabia
*Correspondence e-mail: gelhiti@ksu.edu.sa
This article is part of a collection of articles to commemorate the founding of the African Crystallographic Association and the 75th anniversary of the IUCr.
The 25H19N5O3, is composed of two independent molecules with slightly different conformations. The extended structure features N—H⋯O hydrogen bonds as well as π–π interactions.
of the title compound, CKeywords: crystal structure; pyrazoles; carbohydrazides; isatin; heterocycles; synthesis.
CCDC reference: 2235858
Structure description
The synthesis of et al., 2016). Isatin-containing heterocycles also exhibit biological activities, such as anticonvulsant, antimicrobial and antioxidant properties (see, for example, Kaur et al., 2016). The most common synthetic methods for isatins involve the oxidation of indoles (Zi et al., 2014), oxindoles (Wei et al., 2017; Ying et al., 2018) and aminoacetophenones (Qian et al., 2017). Pyrazoles have several medicinal uses and can act as analgesics and antipyretics (see, for example, Rios & Portilla, 2022). Many synthetic procedures have been reported for the synthesis of pyrazoles (see, for example, Zora et al., 2011; Karrouchi et al., 2018; Li et al., 2021). Recently, we have been investigating the synthesis and structure elucidation of various heterocycles. The current work describes the synthesis and the of a hydrazone containing both isatin and pyrazole moieties using a simple procedure.
and is of interest because of their involvement in various synthetic transformations. In addition, they have potential pharmacological applications (see, for example, AfsahThe 25H19N5O3, contains two independent molecules, M1 and M2 (Fig. 1). Each molecule comprises indole-2-one (M1A: C1–C8, N1, O1 and M2A: C26–C33, N6, O4), formohydrazide (M1B: C9, N2, N3, O2 and M2B: C34, N7, N8, O5), pyrazole (M1C: C10–C12, N4, N5 and M2C: C35–C37, N9, N10), methoxybenzene (M1D: C13–C19, O3 and M2D: C38–C44, O6) and phenyl (M1E: C20–C25 and M2E: C45–C50) moieties.
of the title compound, CIn both molecules, the indole-2-one, formohydrazide and pyrazole groups are close to coplanar: the twist angles M1A/M1B and M1B/M1C are 5.0 (1) and 10.7 (1)°, respectively, for molecule M1 and the corresponding angles M2A/M2B and M2B/M2C for molecule M2 are 4.1 (2) and 9.7 (2)°, respectively. The near coplanarity of the indole-2-one and formohydrazide groups is similar to that observed for the related 1-(4-methoxyphenyl)-5-methyl-N′-(2-oxoindolin-3-ylidene)-1H-1,2,3-triazole-4-carbohydrazide, 3 (Kariuki et al., 2022) and 1-(4-fluorophenyl)-N′-(2-oxoindolin-3-ylidene)-5-phenyl-1H-1,2,3-triazole-4-carbohydrazide, 4 (Mohamed et al., 2023).
The methoxybenzene and phenyl groups deviate from the plane of the indole-2-one and formohydrazide groups. The twist angles M1C/M1D and M1C/M1E are 51.9 (2) and 55.8 (1)°, respectively, for molecule M1 while M2C/M2D and M2C/M2E are 51.7 (2) and 57.7 (1)°, respectively, for molecule M2. The twists of the two aromatic rings from the plane of the pyrazole group is of the same order as observed in 3 (Mohamed et al., 2023) as well as in 4-{3-[2-(4-methoxybenzylidene)hydrazine-1-carbonyl]-5-(4-methoxyphenyl)-1H-pyrazol-1-yl}benzenesulfonamide and 4-{5-(4-bromophenyl)-3-[2-(4-methylbenzylidene)hydrazine-1-carbonyl]-1H-pyrazol-1-yl}benzenesulfonamide, 5 (Lu et al., 2016). Intramolecular N—H⋯O hydrogen bonds (Table 1) contribute to the observed molecular planarity. Similar intramolecular N—H⋯O hydrogen bonds also occur in 3 and 4.
In the extended structure of the title compound, the molecules form layers oriented parallel to (102) (Fig. 2a). Intermolecular N—H⋯O hydrogen bonds (Table 1) occur within the layers. In the layers, aromatic ring edge-to-face interactions occur with ring centroid-to-centroid distances in the range 5.4–5.7 Å (Fig. 2b). Interactions of the type π–π between rings are also observed with centroid–centroid distances of about 4.17 Å.
Synthesis and crystallization
A mixture of 5-(4-methoxyphenyl)-1-phenyl-1H-pyrazole-3-carbohydrazide 1 (0.62 g, 2.0 mmol) and isatin 2 (0.30 g, 2.0 mmol) in dry EtOH (15 ml) containing a catalytic quantity of concentrated HCl (0.1 ml) was refluxed for 2 h. The mixture was left to cool to 20°C and the orange solid produced was collected by filtration. The product was washed with EtOH, dried, and recrystallized from DMF to give the title compound in 90% yield, m.p. 280–281°C. 1H NMR (p.p.m.): 3.72 (s, 3H, OMe), 6.89 (d, 9.1 Hz, 2H, Ar), 6.92 (d, 1H, 7.7 Hz, Ar), 7.08 (t, 7.7 Hz, 1H, Ar), 7.15 (s, 1H, pyrazolyl), 7.18 (d, 9.1 Hz, 2H, Ar), 7.33–7.36 (m, 3H, Ar), 7.44–7.48 (m, 3H, Ar), 7.58 (d, 7.7 Hz, 1H, Ar), 11.17 (s, exch., 1H, NH), 14.08 (s, exch., 1H, NH). 13C NMR (p.p.m.): 55.7, 108.4, 111.6, 114.7, 120.5, 121.6, 123.1, 126.2, 129.2, 129.3, 129.8, 130.6, 132.2, 138.3, 139.8, 143.1, 145.5, 145.7, 158.4, 160.2, 163.1. Analysis calculated for C25H19N5O3 (437.46): C, 68.64; H, 4.38; N, 16.01. Found: C, 68.77; H, 4.47; N, 16.13%.
Refinement
Crystal data, data collection and structure . The methoxybenzene group of one molecule is disordered and was modelled with two components of 0.66 (2) and 0.34 (2) occupancy.
details are summarized in Table 2
|
Structural data
CCDC reference: 2235858
https://doi.org/10.1107/S2414314623004558/hb4430sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314623004558/hb4430Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314623004558/hb4430Isup3.cml
Data collection: CrysAlis PRO 1.171.42.54a (Rigaku OD, 2022); cell
CrysAlis PRO 1.171.42.54a (Rigaku OD, 2022); data reduction: CrysAlis PRO 1.171.42.54a (Rigaku OD, 2022); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012), Mercury (Macrae et al., 2020); software used to prepare material for publication: WinGX (Farrugia, 2012).C25H19N5O3 | F(000) = 1824 |
Mr = 437.45 | Dx = 1.323 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 10.8353 (2) Å | Cell parameters from 14981 reflections |
b = 13.3587 (2) Å | θ = 4.4–72.8° |
c = 30.3697 (4) Å | µ = 0.74 mm−1 |
β = 91.838 (1)° | T = 293 K |
V = 4393.62 (12) Å3 | Needle, yellow |
Z = 8 | 0.28 × 0.24 × 0.13 mm |
SuperNova, Dual, Cu at home/near, Atlas diffractometer | 6902 reflections with I > 2σ(I) |
ω scans | Rint = 0.027 |
Absorption correction: gaussian (Crysalispro; Rigaku OD, 2022) | θmax = 72.8°, θmin = 3.6° |
Tmin = 0.663, Tmax = 1.000 | h = −11→13 |
33362 measured reflections | k = −16→16 |
8632 independent reflections | l = −37→28 |
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H-atom parameters constrained |
wR(F2) = 0.122 | w = 1/[σ2(Fo2) + (0.0662P)2 + 0.4435P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.001 |
8632 reflections | Δρmax = 0.16 e Å−3 |
671 parameters | Δρmin = −0.15 e Å−3 |
389 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.52252 (15) | 0.83217 (11) | 0.32663 (5) | 0.0592 (3) | |
C2 | 0.52711 (14) | 0.72003 (11) | 0.32210 (4) | 0.0537 (3) | |
C3 | 0.60695 (14) | 0.69953 (11) | 0.28547 (5) | 0.0555 (3) | |
C4 | 0.64382 (14) | 0.79218 (11) | 0.26934 (5) | 0.0572 (3) | |
C5 | 0.72114 (16) | 0.79927 (13) | 0.23416 (6) | 0.0677 (4) | |
H5 | 0.744764 | 0.861007 | 0.223064 | 0.081* | |
C6 | 0.76180 (18) | 0.71073 (14) | 0.21621 (6) | 0.0742 (5) | |
H6 | 0.815196 | 0.713327 | 0.192862 | 0.089* | |
C7 | 0.72579 (18) | 0.61836 (14) | 0.23178 (6) | 0.0764 (5) | |
H7 | 0.754893 | 0.560287 | 0.218787 | 0.092* | |
C8 | 0.64635 (17) | 0.61160 (12) | 0.26675 (5) | 0.0669 (4) | |
H8 | 0.620651 | 0.549789 | 0.277148 | 0.080* | |
C9 | 0.34347 (14) | 0.62106 (11) | 0.40400 (5) | 0.0550 (3) | |
C10 | 0.28695 (13) | 0.66435 (11) | 0.44319 (4) | 0.0540 (3) | |
C11 | 0.22281 (14) | 0.61278 (12) | 0.47516 (5) | 0.0579 (3) | |
H11 | 0.201499 | 0.545339 | 0.475096 | 0.070* | |
C12 | 0.19783 (14) | 0.68269 (11) | 0.50672 (5) | 0.0568 (3) | |
C13 | 0.14081 (14) | 0.66994 (11) | 0.54983 (4) | 0.0557 (3) | |
C14 | 0.02927 (15) | 0.61940 (12) | 0.55308 (5) | 0.0627 (4) | |
H14 | −0.011180 | 0.596060 | 0.527635 | 0.075* | |
C15 | −0.02234 (15) | 0.60332 (13) | 0.59332 (5) | 0.0642 (4) | |
H15 | −0.097426 | 0.569987 | 0.594876 | 0.077* | |
C16 | 0.03778 (14) | 0.63689 (11) | 0.63153 (5) | 0.0565 (3) | |
C17 | 0.14915 (14) | 0.68614 (12) | 0.62901 (5) | 0.0603 (4) | |
H17 | 0.190144 | 0.708292 | 0.654564 | 0.072* | |
C18 | 0.19988 (14) | 0.70257 (12) | 0.58833 (5) | 0.0609 (4) | |
H18 | 0.274864 | 0.736086 | 0.586850 | 0.073* | |
C19 | 0.0467 (2) | 0.63903 (18) | 0.71002 (5) | 0.0877 (6) | |
H19A | 0.126011 | 0.606946 | 0.709974 | 0.132* | |
H19B | 0.001109 | 0.614749 | 0.734410 | 0.132* | |
H19C | 0.057706 | 0.710098 | 0.712737 | 0.132* | |
O3 | −0.01949 (11) | 0.61720 (10) | 0.66988 (3) | 0.0730 (3) | |
C20 | 0.24421 (16) | 0.86755 (11) | 0.51263 (5) | 0.0606 (4) | |
C21 | 0.35404 (19) | 0.91566 (14) | 0.52136 (7) | 0.0795 (5) | |
H21 | 0.428034 | 0.886374 | 0.513509 | 0.095* | |
C22 | 0.3541 (2) | 1.00840 (16) | 0.54202 (8) | 0.0942 (6) | |
H22 | 0.428447 | 1.040920 | 0.548336 | 0.113* | |
C23 | 0.2460 (2) | 1.05185 (15) | 0.55304 (7) | 0.0898 (6) | |
H23 | 0.246316 | 1.114663 | 0.566242 | 0.108* | |
C24 | 0.1367 (2) | 1.00314 (16) | 0.54470 (7) | 0.0913 (6) | |
H24 | 0.063160 | 1.032631 | 0.552936 | 0.110* | |
C25 | 0.13386 (19) | 0.91034 (15) | 0.52413 (6) | 0.0787 (5) | |
H25 | 0.059320 | 0.877735 | 0.518236 | 0.094* | |
C26 | 0.54022 (15) | 0.33380 (11) | 0.32501 (5) | 0.0601 (3) | |
C27 | 0.53916 (14) | 0.22196 (11) | 0.33016 (5) | 0.0550 (3) | |
C28 | 0.46467 (15) | 0.20092 (11) | 0.36808 (5) | 0.0586 (3) | |
C29 | 0.42502 (16) | 0.29316 (12) | 0.38402 (5) | 0.0629 (4) | |
C30 | 0.35281 (19) | 0.29935 (14) | 0.42042 (6) | 0.0774 (5) | |
H30 | 0.326915 | 0.360849 | 0.431113 | 0.093* | |
C31 | 0.3203 (2) | 0.21097 (15) | 0.44043 (6) | 0.0851 (6) | |
H31 | 0.271896 | 0.213253 | 0.465138 | 0.102* | |
C32 | 0.3577 (2) | 0.11927 (15) | 0.42481 (6) | 0.0822 (5) | |
H32 | 0.333820 | 0.061035 | 0.438997 | 0.099* | |
C33 | 0.43062 (18) | 0.11295 (13) | 0.38810 (6) | 0.0711 (4) | |
H33 | 0.455702 | 0.051259 | 0.377367 | 0.085* | |
C34 | 0.71499 (14) | 0.12317 (11) | 0.24600 (5) | 0.0549 (3) | |
C35 | 0.79638 (14) | 0.16684 (11) | 0.21296 (4) | 0.0543 (3) | |
C36 | 0.87553 (15) | 0.11368 (12) | 0.18615 (5) | 0.0598 (4) | |
H36 | 0.884597 | 0.044595 | 0.184313 | 0.072* | |
C37 | 0.93705 (14) | 0.18535 (11) | 0.16310 (5) | 0.0565 (3) | |
C38 | 1.0266 (9) | 0.1775 (9) | 0.1271 (3) | 0.0520 (12) | 0.66 (2) |
C39 | 1.1282 (9) | 0.1166 (8) | 0.1344 (3) | 0.0658 (14) | 0.66 (2) |
H39 | 1.140769 | 0.086717 | 0.161813 | 0.079* | 0.66 (2) |
C40 | 1.2120 (8) | 0.0992 (7) | 0.1015 (3) | 0.0681 (13) | 0.66 (2) |
H40 | 1.279234 | 0.057051 | 0.106735 | 0.082* | 0.66 (2) |
C41 | 1.1947 (6) | 0.1448 (5) | 0.0612 (2) | 0.0566 (11) | 0.66 (2) |
C42 | 1.0961 (7) | 0.2093 (7) | 0.0542 (2) | 0.0561 (11) | 0.66 (2) |
H42 | 1.086000 | 0.242043 | 0.027293 | 0.067* | 0.66 (2) |
C43 | 1.0129 (8) | 0.2254 (8) | 0.0868 (3) | 0.0535 (11) | 0.66 (2) |
H43 | 0.946860 | 0.268871 | 0.081729 | 0.064* | 0.66 (2) |
C44 | 1.3854 (6) | 0.0877 (11) | 0.0336 (3) | 0.099 (2) | 0.66 (2) |
H44A | 1.432010 | 0.129168 | 0.053915 | 0.148* | 0.66 (2) |
H44B | 1.427862 | 0.082929 | 0.006447 | 0.148* | 0.66 (2) |
H44C | 1.376545 | 0.022038 | 0.046014 | 0.148* | 0.66 (2) |
O6 | 1.2671 (7) | 0.1303 (5) | 0.0256 (2) | 0.0755 (11) | 0.66 (2) |
C38B | 1.0365 (18) | 0.1668 (18) | 0.1326 (6) | 0.053 (2) | 0.34 (2) |
C39B | 1.1343 (16) | 0.1024 (14) | 0.1406 (5) | 0.0577 (18) | 0.34 (2) |
H39B | 1.141568 | 0.070045 | 0.167671 | 0.069* | 0.34 (2) |
C40B | 1.2218 (13) | 0.0848 (12) | 0.1093 (5) | 0.0607 (18) | 0.34 (2) |
H40B | 1.289063 | 0.043364 | 0.115625 | 0.073* | 0.34 (2) |
C41B | 1.2078 (11) | 0.1296 (9) | 0.0685 (4) | 0.0589 (18) | 0.34 (2) |
C42B | 1.1093 (14) | 0.1924 (12) | 0.0595 (5) | 0.060 (2) | 0.34 (2) |
H42B | 1.099795 | 0.221976 | 0.031910 | 0.073* | 0.34 (2) |
C43B | 1.0247 (16) | 0.2114 (15) | 0.0916 (6) | 0.058 (2) | 0.34 (2) |
H43B | 0.959046 | 0.254638 | 0.085587 | 0.069* | 0.34 (2) |
C44B | 1.3891 (12) | 0.0531 (12) | 0.0426 (7) | 0.089 (3) | 0.34 (2) |
H44D | 1.436829 | 0.077974 | 0.067431 | 0.134* | 0.34 (2) |
H44E | 1.439382 | 0.051794 | 0.017149 | 0.134* | 0.34 (2) |
H44F | 1.360994 | −0.013464 | 0.048798 | 0.134* | 0.34 (2) |
O6B | 1.2863 (12) | 0.1161 (11) | 0.0344 (4) | 0.076 (2) | 0.34 (2) |
C45 | 0.93673 (15) | 0.37295 (11) | 0.16561 (5) | 0.0583 (4) | |
C46 | 1.06071 (18) | 0.39405 (15) | 0.17271 (6) | 0.0735 (4) | |
H46 | 1.114035 | 0.345599 | 0.184366 | 0.088* | |
C47 | 1.1044 (2) | 0.48796 (18) | 0.16229 (7) | 0.0912 (6) | |
H47 | 1.187712 | 0.502916 | 0.166652 | 0.109* | |
C48 | 1.0248 (2) | 0.55904 (16) | 0.14551 (8) | 0.0948 (7) | |
H48 | 1.054419 | 0.622241 | 0.138518 | 0.114* | |
C49 | 0.9022 (2) | 0.53768 (15) | 0.13898 (8) | 0.0929 (6) | |
H49 | 0.848859 | 0.586698 | 0.127869 | 0.111* | |
C50 | 0.85682 (18) | 0.44350 (13) | 0.14879 (6) | 0.0742 (5) | |
H50 | 0.773622 | 0.428606 | 0.144026 | 0.089* | |
N1 | 0.59191 (13) | 0.86917 (9) | 0.29427 (4) | 0.0644 (3) | |
H1 | 0.602962 | 0.931952 | 0.289518 | 0.077* | |
N2 | 0.47247 (12) | 0.65335 (9) | 0.34518 (4) | 0.0556 (3) | |
N3 | 0.40306 (12) | 0.68823 (9) | 0.37855 (4) | 0.0567 (3) | |
H3 | 0.397058 | 0.751439 | 0.383414 | 0.068* | |
N4 | 0.30144 (12) | 0.76075 (10) | 0.45310 (4) | 0.0589 (3) | |
N5 | 0.24509 (12) | 0.77127 (9) | 0.49202 (4) | 0.0581 (3) | |
N6 | 0.47120 (14) | 0.37071 (10) | 0.35775 (5) | 0.0681 (4) | |
H6A | 0.457401 | 0.433331 | 0.361942 | 0.082* | |
N7 | 0.59252 (12) | 0.15611 (9) | 0.30643 (4) | 0.0557 (3) | |
N8 | 0.66029 (12) | 0.19096 (9) | 0.27276 (4) | 0.0564 (3) | |
H8A | 0.668472 | 0.254206 | 0.268439 | 0.068* | |
N9 | 0.80578 (12) | 0.26548 (9) | 0.20751 (4) | 0.0564 (3) | |
N10 | 0.89251 (12) | 0.27560 (9) | 0.17665 (4) | 0.0564 (3) | |
O1 | 0.46685 (13) | 0.87878 (8) | 0.35461 (4) | 0.0761 (3) | |
O2 | 0.34031 (12) | 0.53157 (8) | 0.39661 (4) | 0.0713 (3) | |
O4 | 0.59503 (12) | 0.38076 (8) | 0.29704 (4) | 0.0736 (3) | |
O5 | 0.70216 (12) | 0.03351 (8) | 0.24977 (4) | 0.0735 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0688 (9) | 0.0552 (8) | 0.0545 (8) | −0.0004 (7) | 0.0176 (7) | −0.0021 (6) |
C2 | 0.0599 (8) | 0.0551 (8) | 0.0468 (7) | 0.0024 (6) | 0.0134 (6) | 0.0011 (6) |
C3 | 0.0604 (8) | 0.0578 (8) | 0.0491 (7) | 0.0024 (6) | 0.0144 (6) | 0.0021 (6) |
C4 | 0.0612 (8) | 0.0583 (8) | 0.0528 (7) | −0.0007 (6) | 0.0140 (6) | −0.0007 (6) |
C5 | 0.0739 (10) | 0.0675 (9) | 0.0632 (9) | −0.0056 (8) | 0.0256 (8) | 0.0027 (7) |
C6 | 0.0785 (11) | 0.0798 (11) | 0.0663 (10) | 0.0018 (8) | 0.0332 (8) | 0.0023 (8) |
C7 | 0.0900 (12) | 0.0688 (10) | 0.0724 (10) | 0.0117 (9) | 0.0342 (9) | −0.0025 (8) |
C8 | 0.0804 (10) | 0.0588 (9) | 0.0632 (9) | 0.0068 (7) | 0.0265 (8) | 0.0026 (7) |
C9 | 0.0601 (8) | 0.0550 (8) | 0.0506 (7) | 0.0054 (6) | 0.0152 (6) | 0.0013 (6) |
C10 | 0.0600 (8) | 0.0565 (8) | 0.0465 (7) | 0.0052 (6) | 0.0149 (6) | 0.0011 (6) |
C11 | 0.0662 (8) | 0.0589 (8) | 0.0495 (7) | −0.0014 (6) | 0.0149 (6) | 0.0010 (6) |
C12 | 0.0606 (8) | 0.0626 (8) | 0.0480 (7) | 0.0008 (6) | 0.0144 (6) | 0.0032 (6) |
C13 | 0.0621 (8) | 0.0609 (8) | 0.0450 (7) | −0.0003 (6) | 0.0141 (6) | 0.0021 (6) |
C14 | 0.0693 (9) | 0.0733 (10) | 0.0459 (7) | −0.0107 (7) | 0.0078 (6) | −0.0003 (6) |
C15 | 0.0634 (9) | 0.0755 (10) | 0.0543 (8) | −0.0149 (7) | 0.0112 (7) | 0.0013 (7) |
C16 | 0.0650 (8) | 0.0597 (8) | 0.0460 (7) | −0.0032 (6) | 0.0169 (6) | 0.0005 (6) |
C17 | 0.0667 (9) | 0.0688 (9) | 0.0459 (7) | −0.0077 (7) | 0.0083 (6) | −0.0030 (6) |
C18 | 0.0574 (8) | 0.0728 (9) | 0.0532 (8) | −0.0082 (7) | 0.0121 (6) | 0.0008 (7) |
C19 | 0.0961 (13) | 0.1231 (16) | 0.0450 (8) | −0.0197 (12) | 0.0185 (8) | −0.0056 (9) |
O3 | 0.0809 (7) | 0.0924 (8) | 0.0469 (5) | −0.0197 (6) | 0.0211 (5) | −0.0014 (5) |
C20 | 0.0778 (10) | 0.0571 (8) | 0.0480 (7) | 0.0049 (7) | 0.0183 (7) | 0.0017 (6) |
C21 | 0.0833 (12) | 0.0680 (10) | 0.0885 (12) | −0.0030 (9) | 0.0238 (10) | −0.0084 (9) |
C22 | 0.1095 (16) | 0.0710 (12) | 0.1028 (16) | −0.0114 (11) | 0.0159 (12) | −0.0112 (11) |
C23 | 0.1319 (19) | 0.0631 (10) | 0.0750 (12) | 0.0113 (12) | 0.0143 (12) | −0.0078 (9) |
C24 | 0.1104 (16) | 0.0816 (13) | 0.0831 (13) | 0.0319 (12) | 0.0216 (11) | −0.0075 (10) |
C25 | 0.0813 (11) | 0.0792 (11) | 0.0764 (11) | 0.0142 (9) | 0.0147 (9) | −0.0068 (9) |
C26 | 0.0657 (9) | 0.0563 (8) | 0.0591 (8) | 0.0036 (7) | 0.0163 (7) | 0.0006 (6) |
C27 | 0.0606 (8) | 0.0555 (8) | 0.0497 (7) | 0.0027 (6) | 0.0153 (6) | 0.0009 (6) |
C28 | 0.0672 (9) | 0.0594 (8) | 0.0503 (7) | 0.0046 (7) | 0.0167 (6) | −0.0010 (6) |
C29 | 0.0697 (9) | 0.0633 (9) | 0.0567 (8) | 0.0074 (7) | 0.0176 (7) | −0.0012 (7) |
C30 | 0.0917 (12) | 0.0751 (11) | 0.0672 (10) | 0.0139 (9) | 0.0314 (9) | −0.0039 (8) |
C31 | 0.1029 (14) | 0.0889 (13) | 0.0661 (10) | 0.0103 (10) | 0.0427 (10) | 0.0021 (9) |
C32 | 0.1050 (14) | 0.0753 (11) | 0.0687 (10) | 0.0029 (10) | 0.0392 (10) | 0.0087 (8) |
C33 | 0.0886 (11) | 0.0635 (9) | 0.0629 (9) | 0.0047 (8) | 0.0290 (8) | 0.0023 (7) |
C34 | 0.0640 (8) | 0.0540 (8) | 0.0476 (7) | −0.0008 (6) | 0.0162 (6) | 0.0017 (6) |
C35 | 0.0627 (8) | 0.0551 (8) | 0.0461 (7) | −0.0029 (6) | 0.0160 (6) | −0.0005 (6) |
C36 | 0.0701 (9) | 0.0557 (8) | 0.0549 (8) | 0.0015 (7) | 0.0214 (7) | 0.0000 (6) |
C37 | 0.0616 (8) | 0.0604 (8) | 0.0483 (7) | −0.0016 (6) | 0.0151 (6) | −0.0018 (6) |
C38 | 0.056 (2) | 0.056 (3) | 0.046 (3) | −0.0001 (14) | 0.0142 (19) | 0.0002 (19) |
C39 | 0.073 (2) | 0.074 (3) | 0.050 (2) | 0.009 (2) | 0.0096 (17) | 0.0135 (17) |
C40 | 0.0618 (19) | 0.078 (3) | 0.065 (3) | 0.0170 (17) | 0.0098 (18) | 0.0058 (19) |
C41 | 0.0548 (19) | 0.067 (2) | 0.0491 (18) | −0.0030 (16) | 0.0123 (14) | −0.0025 (15) |
C42 | 0.0629 (19) | 0.061 (2) | 0.0455 (19) | −0.0002 (14) | 0.0121 (14) | 0.0042 (15) |
C43 | 0.057 (2) | 0.057 (3) | 0.0468 (19) | 0.0022 (14) | 0.0097 (15) | 0.0048 (15) |
C44 | 0.066 (2) | 0.150 (6) | 0.081 (3) | 0.018 (3) | 0.0134 (19) | −0.015 (4) |
O6 | 0.062 (2) | 0.107 (2) | 0.059 (2) | 0.0102 (14) | 0.0207 (15) | −0.0021 (15) |
C38B | 0.058 (3) | 0.057 (4) | 0.045 (3) | −0.003 (3) | 0.009 (3) | 0.004 (3) |
C39B | 0.059 (3) | 0.062 (4) | 0.053 (4) | 0.008 (2) | 0.014 (3) | 0.010 (3) |
C40B | 0.054 (3) | 0.068 (4) | 0.061 (3) | 0.005 (3) | 0.011 (3) | 0.004 (3) |
C41B | 0.054 (3) | 0.068 (3) | 0.055 (3) | 0.004 (2) | 0.017 (3) | −0.003 (3) |
C42B | 0.072 (4) | 0.064 (4) | 0.046 (3) | 0.001 (3) | 0.015 (3) | 0.007 (3) |
C43B | 0.060 (3) | 0.059 (4) | 0.055 (4) | 0.010 (3) | 0.010 (3) | 0.000 (3) |
C44B | 0.065 (4) | 0.113 (7) | 0.090 (6) | 0.019 (4) | 0.030 (4) | −0.017 (5) |
O6B | 0.063 (4) | 0.105 (4) | 0.062 (4) | 0.013 (3) | 0.026 (3) | −0.005 (3) |
C45 | 0.0724 (9) | 0.0571 (8) | 0.0467 (7) | −0.0090 (7) | 0.0226 (6) | −0.0036 (6) |
C46 | 0.0792 (11) | 0.0818 (11) | 0.0599 (9) | −0.0162 (9) | 0.0080 (8) | −0.0003 (8) |
C47 | 0.0998 (15) | 0.0941 (15) | 0.0808 (12) | −0.0401 (12) | 0.0173 (11) | −0.0070 (11) |
C48 | 0.1280 (19) | 0.0671 (11) | 0.0918 (14) | −0.0281 (12) | 0.0423 (13) | −0.0041 (10) |
C49 | 0.1182 (17) | 0.0608 (10) | 0.1020 (15) | 0.0036 (11) | 0.0387 (13) | 0.0094 (10) |
C50 | 0.0791 (11) | 0.0633 (9) | 0.0819 (11) | 0.0010 (8) | 0.0278 (9) | 0.0026 (8) |
N1 | 0.0813 (9) | 0.0516 (7) | 0.0619 (7) | −0.0047 (6) | 0.0264 (6) | −0.0014 (5) |
N2 | 0.0647 (7) | 0.0553 (6) | 0.0479 (6) | 0.0042 (5) | 0.0181 (5) | 0.0000 (5) |
N3 | 0.0703 (7) | 0.0520 (6) | 0.0490 (6) | 0.0028 (5) | 0.0217 (5) | 0.0004 (5) |
N4 | 0.0690 (7) | 0.0611 (7) | 0.0478 (6) | 0.0031 (6) | 0.0217 (5) | 0.0010 (5) |
N5 | 0.0697 (7) | 0.0581 (7) | 0.0477 (6) | 0.0011 (6) | 0.0205 (5) | 0.0000 (5) |
N6 | 0.0822 (9) | 0.0546 (7) | 0.0692 (8) | 0.0079 (6) | 0.0271 (7) | −0.0019 (6) |
N7 | 0.0645 (7) | 0.0559 (7) | 0.0477 (6) | 0.0004 (5) | 0.0186 (5) | 0.0017 (5) |
N8 | 0.0676 (7) | 0.0516 (6) | 0.0513 (6) | −0.0004 (5) | 0.0228 (5) | 0.0024 (5) |
N9 | 0.0650 (7) | 0.0571 (7) | 0.0484 (6) | −0.0046 (5) | 0.0212 (5) | −0.0006 (5) |
N10 | 0.0656 (7) | 0.0553 (7) | 0.0496 (6) | −0.0053 (5) | 0.0206 (5) | −0.0016 (5) |
O1 | 0.1001 (9) | 0.0573 (6) | 0.0732 (7) | 0.0007 (6) | 0.0383 (6) | −0.0079 (5) |
O2 | 0.0912 (8) | 0.0544 (6) | 0.0703 (7) | −0.0001 (5) | 0.0347 (6) | −0.0019 (5) |
O4 | 0.0886 (8) | 0.0566 (6) | 0.0777 (7) | 0.0020 (5) | 0.0337 (6) | 0.0079 (5) |
O5 | 0.1010 (9) | 0.0524 (6) | 0.0696 (7) | −0.0023 (5) | 0.0404 (6) | 0.0010 (5) |
C1—O1 | 1.2275 (18) | C31—H31 | 0.9300 |
C1—N1 | 1.3500 (19) | C32—C33 | 1.390 (2) |
C1—C2 | 1.505 (2) | C32—H32 | 0.9300 |
C2—N2 | 1.2892 (18) | C33—H33 | 0.9300 |
C2—C3 | 1.4568 (18) | C34—O5 | 1.2117 (18) |
C3—C8 | 1.379 (2) | C34—N8 | 1.3650 (18) |
C3—C4 | 1.394 (2) | C34—C35 | 1.4771 (18) |
C4—C5 | 1.382 (2) | C35—N9 | 1.3323 (19) |
C4—N1 | 1.4053 (19) | C35—C36 | 1.3955 (19) |
C5—C6 | 1.380 (2) | C36—C37 | 1.371 (2) |
C5—H5 | 0.9300 | C36—H36 | 0.9300 |
C6—C7 | 1.382 (3) | C37—N10 | 1.3670 (19) |
C6—H6 | 0.9300 | C37—C38B | 1.464 (14) |
C7—C8 | 1.391 (2) | C37—C38 | 1.489 (7) |
C7—H7 | 0.9300 | C38—C39 | 1.380 (4) |
C8—H8 | 0.9300 | C38—C43 | 1.384 (4) |
C9—O2 | 1.2166 (18) | C39—C40 | 1.391 (4) |
C9—N3 | 1.3607 (18) | C39—H39 | 0.9300 |
C9—C10 | 1.4741 (18) | C40—C41 | 1.374 (4) |
C10—N4 | 1.331 (2) | C40—H40 | 0.9300 |
C10—C11 | 1.3941 (19) | C41—O6 | 1.372 (4) |
C11—C12 | 1.371 (2) | C41—C42 | 1.384 (4) |
C11—H11 | 0.9300 | C42—C43 | 1.378 (4) |
C12—N5 | 1.3698 (19) | C42—H42 | 0.9300 |
C12—C13 | 1.4754 (18) | C43—H43 | 0.9300 |
C13—C18 | 1.385 (2) | C44—O6 | 1.416 (5) |
C13—C14 | 1.391 (2) | C44—H44A | 0.9600 |
C14—C15 | 1.377 (2) | C44—H44B | 0.9600 |
C14—H14 | 0.9300 | C44—H44C | 0.9600 |
C15—C16 | 1.387 (2) | C38B—C39B | 1.380 (7) |
C15—H15 | 0.9300 | C38B—C43B | 1.382 (7) |
C16—O3 | 1.3627 (16) | C39B—C40B | 1.385 (6) |
C16—C17 | 1.379 (2) | C39B—H39B | 0.9300 |
C17—C18 | 1.3858 (19) | C40B—C41B | 1.378 (7) |
C17—H17 | 0.9300 | C40B—H40B | 0.9300 |
C18—H18 | 0.9300 | C41B—O6B | 1.373 (6) |
C19—O3 | 1.425 (2) | C41B—C42B | 1.378 (7) |
C19—H19A | 0.9600 | C42B—C43B | 1.384 (6) |
C19—H19B | 0.9600 | C42B—H42B | 0.9300 |
C19—H19C | 0.9600 | C43B—H43B | 0.9300 |
C20—C21 | 1.371 (3) | C44B—O6B | 1.412 (7) |
C20—C25 | 1.380 (2) | C44B—H44D | 0.9600 |
C20—N5 | 1.4305 (19) | C44B—H44E | 0.9600 |
C21—C22 | 1.389 (3) | C44B—H44F | 0.9600 |
C21—H21 | 0.9300 | C45—C50 | 1.368 (3) |
C22—C23 | 1.359 (3) | C45—C46 | 1.383 (2) |
C22—H22 | 0.9300 | C45—N10 | 1.4294 (18) |
C23—C24 | 1.368 (3) | C46—C47 | 1.381 (3) |
C23—H23 | 0.9300 | C46—H46 | 0.9300 |
C24—C25 | 1.388 (3) | C47—C48 | 1.370 (3) |
C24—H24 | 0.9300 | C47—H47 | 0.9300 |
C25—H25 | 0.9300 | C48—C49 | 1.367 (3) |
C26—O4 | 1.2249 (18) | C48—H48 | 0.9300 |
C26—N6 | 1.3559 (19) | C49—C50 | 1.387 (3) |
C26—C27 | 1.502 (2) | C49—H49 | 0.9300 |
C27—N7 | 1.2862 (18) | C50—H50 | 0.9300 |
C27—C28 | 1.4545 (19) | N1—H1 | 0.8600 |
C28—C33 | 1.379 (2) | N2—N3 | 1.3633 (15) |
C28—C29 | 1.397 (2) | N3—H3 | 0.8600 |
C29—C30 | 1.377 (2) | N4—N5 | 1.3551 (15) |
C29—N6 | 1.409 (2) | N6—H6A | 0.8600 |
C30—C31 | 1.378 (3) | N7—N8 | 1.3600 (15) |
C30—H30 | 0.9300 | N8—H8A | 0.8600 |
C31—C32 | 1.379 (3) | N9—N10 | 1.3552 (15) |
O1—C1—N1 | 128.01 (14) | O5—C34—C35 | 121.83 (13) |
O1—C1—C2 | 125.91 (13) | N8—C34—C35 | 115.00 (12) |
N1—C1—C2 | 106.09 (12) | N9—C35—C36 | 112.34 (12) |
N2—C2—C3 | 125.42 (13) | N9—C35—C34 | 121.64 (12) |
N2—C2—C1 | 128.38 (12) | C36—C35—C34 | 125.93 (13) |
C3—C2—C1 | 106.20 (12) | C37—C36—C35 | 105.10 (13) |
C8—C3—C4 | 121.01 (13) | C37—C36—H36 | 127.5 |
C8—C3—C2 | 132.41 (14) | C35—C36—H36 | 127.5 |
C4—C3—C2 | 106.58 (12) | N10—C37—C36 | 106.26 (12) |
C5—C4—C3 | 121.34 (14) | N10—C37—C38B | 127.9 (10) |
C5—C4—N1 | 129.02 (14) | C36—C37—C38B | 125.7 (9) |
C3—C4—N1 | 109.64 (12) | N10—C37—C38 | 121.9 (5) |
C6—C5—C4 | 117.12 (15) | C36—C37—C38 | 131.6 (5) |
C6—C5—H5 | 121.4 | C39—C38—C43 | 118.5 (4) |
C4—C5—H5 | 121.4 | C39—C38—C37 | 117.3 (5) |
C5—C6—C7 | 122.18 (15) | C43—C38—C37 | 124.2 (5) |
C5—C6—H6 | 118.9 | C38—C39—C40 | 121.3 (4) |
C7—C6—H6 | 118.9 | C38—C39—H39 | 119.4 |
C6—C7—C8 | 120.49 (16) | C40—C39—H39 | 119.4 |
C6—C7—H7 | 119.8 | C41—C40—C39 | 119.4 (4) |
C8—C7—H7 | 119.8 | C41—C40—H40 | 120.3 |
C3—C8—C7 | 117.84 (15) | C39—C40—H40 | 120.3 |
C3—C8—H8 | 121.1 | O6—C41—C40 | 125.1 (4) |
C7—C8—H8 | 121.1 | O6—C41—C42 | 115.1 (4) |
O2—C9—N3 | 123.67 (13) | C40—C41—C42 | 119.8 (4) |
O2—C9—C10 | 121.62 (13) | C43—C42—C41 | 120.4 (4) |
N3—C9—C10 | 114.64 (12) | C43—C42—H42 | 119.8 |
N4—C10—C11 | 112.24 (12) | C41—C42—H42 | 119.8 |
N4—C10—C9 | 120.88 (12) | C42—C43—C38 | 120.6 (4) |
C11—C10—C9 | 126.71 (14) | C42—C43—H43 | 119.7 |
C12—C11—C10 | 105.32 (13) | C38—C43—H43 | 119.7 |
C12—C11—H11 | 127.3 | O6—C44—H44A | 109.5 |
C10—C11—H11 | 127.3 | O6—C44—H44B | 109.5 |
N5—C12—C11 | 106.04 (12) | H44A—C44—H44B | 109.5 |
N5—C12—C13 | 124.09 (13) | O6—C44—H44C | 109.5 |
C11—C12—C13 | 129.74 (14) | H44A—C44—H44C | 109.5 |
C18—C13—C14 | 118.16 (13) | H44B—C44—H44C | 109.5 |
C18—C13—C12 | 121.16 (13) | C41—O6—C44 | 117.2 (4) |
C14—C13—C12 | 120.57 (13) | C39B—C38B—C43B | 118.4 (8) |
C15—C14—C13 | 121.15 (14) | C39B—C38B—C37 | 124.9 (10) |
C15—C14—H14 | 119.4 | C43B—C38B—C37 | 116.6 (10) |
C13—C14—H14 | 119.4 | C38B—C39B—C40B | 121.6 (8) |
C14—C15—C16 | 119.92 (14) | C38B—C39B—H39B | 119.2 |
C14—C15—H15 | 120.0 | C40B—C39B—H39B | 119.2 |
C16—C15—H15 | 120.0 | C41B—C40B—C39B | 119.0 (7) |
O3—C16—C17 | 124.25 (14) | C41B—C40B—H40B | 120.5 |
O3—C16—C15 | 115.98 (13) | C39B—C40B—H40B | 120.5 |
C17—C16—C15 | 119.77 (13) | O6B—C41B—C40B | 124.6 (7) |
C16—C17—C18 | 119.86 (14) | O6B—C41B—C42B | 115.1 (7) |
C16—C17—H17 | 120.1 | C40B—C41B—C42B | 120.3 (7) |
C18—C17—H17 | 120.1 | C41B—C42B—C43B | 119.9 (7) |
C13—C18—C17 | 121.13 (14) | C41B—C42B—H42B | 120.1 |
C13—C18—H18 | 119.4 | C43B—C42B—H42B | 120.1 |
C17—C18—H18 | 119.4 | C38B—C43B—C42B | 120.7 (8) |
O3—C19—H19A | 109.5 | C38B—C43B—H43B | 119.6 |
O3—C19—H19B | 109.5 | C42B—C43B—H43B | 119.6 |
H19A—C19—H19B | 109.5 | O6B—C44B—H44D | 109.5 |
O3—C19—H19C | 109.5 | O6B—C44B—H44E | 109.5 |
H19A—C19—H19C | 109.5 | H44D—C44B—H44E | 109.5 |
H19B—C19—H19C | 109.5 | O6B—C44B—H44F | 109.5 |
C16—O3—C19 | 117.47 (13) | H44D—C44B—H44F | 109.5 |
C21—C20—C25 | 120.70 (16) | H44E—C44B—H44F | 109.5 |
C21—C20—N5 | 119.22 (15) | C41B—O6B—C44B | 116.7 (8) |
C25—C20—N5 | 120.07 (16) | C50—C45—C46 | 121.20 (16) |
C20—C21—C22 | 119.56 (19) | C50—C45—N10 | 120.11 (15) |
C20—C21—H21 | 120.2 | C46—C45—N10 | 118.69 (15) |
C22—C21—H21 | 120.2 | C47—C46—C45 | 119.2 (2) |
C23—C22—C21 | 120.3 (2) | C47—C46—H46 | 120.4 |
C23—C22—H22 | 119.8 | C45—C46—H46 | 120.4 |
C21—C22—H22 | 119.8 | C48—C47—C46 | 119.9 (2) |
C22—C23—C24 | 119.96 (19) | C48—C47—H47 | 120.0 |
C22—C23—H23 | 120.0 | C46—C47—H47 | 120.0 |
C24—C23—H23 | 120.0 | C49—C48—C47 | 120.41 (19) |
C23—C24—C25 | 121.0 (2) | C49—C48—H48 | 119.8 |
C23—C24—H24 | 119.5 | C47—C48—H48 | 119.8 |
C25—C24—H24 | 119.5 | C48—C49—C50 | 120.5 (2) |
C20—C25—C24 | 118.5 (2) | C48—C49—H49 | 119.7 |
C20—C25—H25 | 120.8 | C50—C49—H49 | 119.7 |
C24—C25—H25 | 120.8 | C45—C50—C49 | 118.73 (19) |
O4—C26—N6 | 127.84 (15) | C45—C50—H50 | 120.6 |
O4—C26—C27 | 125.95 (13) | C49—C50—H50 | 120.6 |
N6—C26—C27 | 106.20 (12) | C1—N1—C4 | 111.48 (12) |
N7—C27—C28 | 125.61 (13) | C1—N1—H1 | 124.3 |
N7—C27—C26 | 128.08 (13) | C4—N1—H1 | 124.3 |
C28—C27—C26 | 106.31 (12) | C2—N2—N3 | 116.22 (12) |
C33—C28—C29 | 120.62 (14) | C9—N3—N2 | 118.68 (12) |
C33—C28—C27 | 132.60 (14) | C9—N3—H3 | 120.7 |
C29—C28—C27 | 106.77 (13) | N2—N3—H3 | 120.7 |
C30—C29—C28 | 121.35 (15) | C10—N4—N5 | 104.15 (11) |
C30—C29—N6 | 129.16 (15) | N4—N5—C12 | 112.22 (12) |
C28—C29—N6 | 109.49 (13) | N4—N5—C20 | 118.97 (12) |
C29—C30—C31 | 117.51 (16) | C12—N5—C20 | 128.78 (11) |
C29—C30—H30 | 121.2 | C26—N6—C29 | 111.22 (13) |
C31—C30—H30 | 121.2 | C26—N6—H6A | 124.4 |
C30—C31—C32 | 121.83 (15) | C29—N6—H6A | 124.4 |
C30—C31—H31 | 119.1 | C27—N7—N8 | 116.77 (12) |
C32—C31—H31 | 119.1 | N7—N8—C34 | 118.41 (12) |
C31—C32—C33 | 120.71 (17) | N7—N8—H8A | 120.8 |
C31—C32—H32 | 119.6 | C34—N8—H8A | 120.8 |
C33—C32—H32 | 119.6 | C35—N9—N10 | 104.00 (11) |
C28—C33—C32 | 117.98 (16) | N9—N10—C37 | 112.30 (11) |
C28—C33—H33 | 121.0 | N9—N10—C45 | 119.87 (11) |
C32—C33—H33 | 121.0 | C37—N10—C45 | 127.42 (11) |
O5—C34—N8 | 123.11 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O5i | 0.86 | 2.13 | 2.8594 (16) | 142 |
N3—H3···O1 | 0.86 | 2.07 | 2.7419 (17) | 135 |
N6—H6A···O2 | 0.86 | 2.13 | 2.8512 (17) | 142 |
N8—H8A···O4 | 0.86 | 2.07 | 2.7396 (16) | 134 |
C5—H5···O5i | 0.93 | 2.49 | 3.172 (2) | 130 |
C30—H30···O2 | 0.93 | 2.52 | 3.187 (2) | 129 |
C36—H36···O3ii | 0.93 | 2.44 | 3.330 (2) | 159 |
Symmetry codes: (i) x, y+1, z; (ii) x+1, −y+1/2, z−1/2. |
Acknowledgements
We thank Cardiff University and the National Research Centre for technical support.
Funding information
Funding for this research was provided by: Researchers Supporting Project, King Saud University, Riyadh, Saudi Arabia. (award No. RSP2023R404).
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