1-(Phenyl­sulfon­yl)-1H-indole-2-carbaldehyde

Pineda, L.W.; Ferllini, N.; Cabezas, J.A.

doi:10.1107/S2414314622004011

organic compounds

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ISSN: 2414-3146

Volume 7| Part 4| April 2022| x220401

https://doi.org/10.1107/S2414314622004011

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1-(Phenylsulfonyl)-1H-indole-2-carbaldehyde

Leslie W. Pineda,^a,^b Natasha Ferllini ^a and Jorge A. Cabezas ^a ^*

^aEscuela de Química, Universidad de Costa Rica, 11501-2060, San José, Costa Rica, and ^bCentro de Electroquímica y Energía Química (CELEQ), Universidad de Costa Rica, 11501-2060, San José, Costa Rica
^*Correspondence e-mail: jorge.cabezas@ucr.ac.cr

Edited by W. T. A. Harrison, University of Aberdeen, Scotland (Received 28 March 2022; accepted 13 April 2022; online 22 April 2022)

The title compound, C₁₅H₁₁NO₃S, was prepared by a facile synthetic approach. The N atom in the pyrrole ring of the indole moiety is pyramidal (bond-angle sum = 350.0°) and the phenyl ring of the phenylsulfonyl motif forms a dihedral angle of 76.24 (7)° with the mean plane of the indole ring system. In the crystal, C—H⋯O and C—H⋯π interactions link the molecules into a three-dimensional network.

Keywords: crystal structure; heterocyclic system; indole; sulfanilamide.

CCDC reference: 2123919

Structure description

The indole ring framework is a heterocyclic system found in many natural products. Many of these compounds possess biological activity, from neurotransmitter serotonin to vinblastine, an alkaloid clinically used as an anticancer agent (Inman & Moody, 2013 ). The title compound, 1, is a useful synthetic intermediate, which has been used in the preparation of bouchardatine, a natural occurring alkaloid isolated from the rutaecarpine family (Naik et al., 2013 ). It has also been used to synthesize bis(1H-indol-2-yl)methanones, potent inhibitors of FLT3 receptor tyrosine kinase (Mahboobi et al., 2006 ). Usually, this synthetic intermediate is synthesized from indole, which is treated with benzenesulfonyl chloride under basic conditions, and further formylated at the 2-position by sequential treatment with lithium diisopropyl amide and dimethylformamide. As a part of our program of the synthesis of biologically active sulfanilamide derivatives (Cabezas & Arias, 2019 ), we report herein a straightforward approach for the synthesis of 1 and its crystal structure.

The crystal structure of 1 has monoclinic symmetry with one molecule in the asymmetric unit: the five-membered pyrrole ring of the indole motif contains a carbaldehyde group and also binds via a nitrogen atom to a phenylsulfonyl fragment (Fig. 1). The bond lengths and angles in 1 do not show any unexpected features (Palani et al., 2006 ; Sakthivel et al., 2006 ). The bond angles O3—S1—O2 [120.63 (10)°] and N1—S1—C15 [104.80 (8)°] support the distorted tetrahedral geometry around atom S1. Atom N1 within the pyrrole ring deviates from planar geometry, showing a slight pyramidalization (bond-angle sum = 350.0°). The phenyl ring of the phenylsulfonyl motif subtends a dihedral angle of 76.24 (7)° with the mean plane of the indole ring system. There are two short intramolecular C—H⋯O contacts and the crystal packing features C—H⋯O and C—H⋯π interactions (Table 1, Fig. 2).

Table 1
Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C3–C8 ring.

D—H⋯A	D—H	H⋯A	D⋯A	D—H⋯A
C7—H7⋯O3	0.93	2.44	3.014 (3)	120
C9—H9⋯O2	0.93	2.34	2.869 (3)	116
C4—H4⋯O1ⁱ	0.93	2.51	3.343 (3)	150
C12—H12⋯Cg2ⁱⁱ	0.93	2.71	3.638 (3)	174
Symmetry codes: (i) $[-x, y-{\script{1\over 2}}, -z+{\script{1\over 2}}]$ ; (ii) .

Figure 1
Molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level.

Figure 2
Packing view of the title compound. C—H⋯O and C—H⋯π interactions are shown as green and purple dashed lines, respectively.

Synthesis and crystallization

The title compound, 1, was synthesized by the reaction of 2-iodoaniline, 2, with benzenesulfonyl chloride, 3, in the presence of pyridine to obtain after purification by column chromatography, the iodosulfonamide 4. Treatment of the latter iodide, 4, with propargyl alcohol, 5, under Sonogashira's reaction conditions (Sonogashira et al., 1975 ), at room temperature, produced [1-(phenylsulfonyl)-1H-indol-2-yl]methanol 6 in a one-pot reaction and with overall yield of 84%. Similar synthetic strategies, using N-(2-iodophenyl)methane sulfonamides, required heating at 100–110°C in a sealed tube (Sakamoto et al., 1988 ). Oxidation of this alcohol, with pyridinium chlorochromate, provided the target aldehyde in 81% yield (Fig. 3). The product was recrystallized from ethyl acetate solution at room temperature resulting in light-yellow blocks.

Figure 3
A synthetic scheme for the preparation of the title compound.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2.

Table 2
Experimental details

Crystal data
Chemical formula	C₁₅H₁₁NO₃S
M_r	285.31
Crystal system, space group	Monoclinic, P2₁/c
Temperature (K)	273
a, b, c (Å)	12.6886 (7), 9.2655 (6), 11.6024 (7)
β (°)	105.374 (2)
V (Å³)	1315.24 (14)
Z	4
Radiation type	Mo Kα
μ (mm⁻¹)	0.25
Crystal size (mm)	0.20 × 0.15 × 0.15

Data collection
Diffractometer	Bruker D8 Venture
Absorption correction	Multi-scan (SADABS; Bruker, 2015 )
T_min, T_max	0.690, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections	18696, 3032, 1791
R_int	0.057
(sin θ/λ)_max (Å⁻¹)	0.651

Refinement
R[F² > 2σ(F²)], wR(F²), S	0.048, 0.114, 1.01
No. of reflections	3032
No. of parameters	181
H-atom treatment	H-atom parameters constrained
Δρ_max, Δρ_min (e Å⁻³)	0.24, −0.33
Computer programs: APEX3 and SAINT (Bruker, 2015), SHELXT (Sheldrick, 2015a ), SHELXL2014 (Sheldrick, 2015b ), Mercury (Macrae et al., 2020 ) and publCIF (Westrip, 2010 ).

Structural data

CCDC reference: 2123919

Crystal structure: contains datablocks global, I. DOI: https://doi.org/10.1107/S2414314622004011/hb4405sup1.cif

Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314622004011/hb4405Isup2.hkl

checkCIF report

Computing details top

Data collection: APEX3 (Bruker, 2015); cell refinement: SAINT (Bruker, 2015); data reduction: SAINT (Bruker, 2015); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: publCIF (Westrip, 2010).

1-(Phenylsulfonyl)-1H-indole-2-carbaldehyde top

Crystal data top

C₁₅H₁₁NO₃S	F(000) = 592
M_r = 285.31	D_x = 1.441 Mg m⁻³
Monoclinic, P2₁/c	Mo Kα radiation, λ = 0.71073 Å
a = 12.6886 (7) Å	Cell parameters from 3972 reflections
b = 9.2655 (6) Å	θ = 2.8–23.8°
c = 11.6024 (7) Å	µ = 0.25 mm⁻¹
β = 105.374 (2)°	T = 273 K
V = 1315.24 (14) Å³	Block, clear light yellow
Z = 4	0.20 × 0.15 × 0.15 mm

Data collection top

Bruker D8 Venture diffractometer	3032 independent reflections
Radiation source: Incoatec Microsource	1791 reflections with I > 2σ(I)
Mirrors monochromator	R_int = 0.057
Detector resolution: 10.4167 pixels mm^-1	θ_max = 27.5°, θ_min = 2.8°
ω scans	h = −16→16
Absorption correction: multi-scan (SADABS; Bruker, 2015)	k = −12→12
T_min = 0.690, T_max = 0.746	l = −15→14
18696 measured reflections

Refinement top

Refinement on F²	Primary atom site location: structure-invariant direct methods
Least-squares matrix: full	Secondary atom site location: difference Fourier map
R[F² > 2σ(F²)] = 0.048	Hydrogen site location: inferred from neighbouring sites
wR(F²) = 0.114	H-atom parameters constrained
S = 1.01	w = 1/[σ²(F_o²) + (0.0529P)² + 0.1517P] where P = (F_o² + 2F_c²)/3
3032 reflections	(Δ/σ)_max = 0.001
181 parameters	Δρ_max = 0.24 e Å⁻³
0 restraints	Δρ_min = −0.33 e Å⁻³

Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. All hydrogen atoms were placed geometrically and refined using a riding-model approximation, with C—H = 0.95–1.00 Å and U_iso(H) = 1.2U_eq(C).

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å²) top

	x	y	z	U_iso*/U_eq
S1	0.26292 (4)	0.67883 (6)	0.70277 (4)	0.0461 (2)
O1	0.03455 (14)	0.88036 (19)	0.38393 (17)	0.0771 (5)
O2	0.23104 (12)	0.82550 (16)	0.70663 (14)	0.0621 (5)
O3	0.27691 (13)	0.58878 (18)	0.80466 (12)	0.0645 (5)
N1	0.16726 (12)	0.60075 (18)	0.59334 (13)	0.0407 (4)
C1	0.11260 (15)	0.6739 (2)	0.48512 (18)	0.0421 (5)
C2	0.08938 (16)	0.5776 (2)	0.39588 (18)	0.0447 (5)
H2	0.0523	0.5978	0.317	0.054*
C3	0.13005 (15)	0.4395 (2)	0.44002 (17)	0.0400 (5)
C4	0.12749 (18)	0.3046 (3)	0.3870 (2)	0.0537 (6)
H4	0.0946	0.2926	0.3058	0.064*
C5	0.17400 (19)	0.1897 (3)	0.4559 (2)	0.0599 (7)
H5	0.1735	0.0992	0.4211	0.072*
C6	0.2220 (2)	0.2070 (2)	0.5775 (2)	0.0595 (6)
H6	0.2527	0.1272	0.6226	0.071*
C7	0.22548 (18)	0.3386 (2)	0.63281 (19)	0.0519 (6)
H7	0.2578	0.3491	0.7142	0.062*
C8	0.17904 (15)	0.4546 (2)	0.56285 (17)	0.0384 (5)
C9	0.07306 (18)	0.8234 (3)	0.4781 (2)	0.0586 (6)
H9	0.0781	0.8747	0.5483	0.07*
C10	0.39626 (19)	0.7687 (2)	0.5702 (2)	0.0523 (6)
H10	0.3429	0.8375	0.5392	0.063*
C11	0.4910 (2)	0.7626 (3)	0.5327 (2)	0.0670 (7)
H11	0.5014	0.8276	0.4756	0.08*
C12	0.5693 (2)	0.6617 (3)	0.5788 (2)	0.0704 (8)
H12	0.633	0.6591	0.5537	0.084*
C13	0.55456 (19)	0.5649 (3)	0.6616 (2)	0.0672 (7)
H13	0.6078	0.4958	0.692	0.081*
C14	0.46101 (18)	0.5694 (2)	0.70013 (19)	0.0538 (6)
H14	0.451	0.5038	0.7569	0.065*
C15	0.38264 (15)	0.6712 (2)	0.65436 (16)	0.0385 (5)

Atomic displacement parameters (Å²) top

	U¹¹	U²²	U³³	U¹²	U¹³	U²³
S1	0.0452 (3)	0.0563 (4)	0.0376 (3)	−0.0103 (3)	0.0123 (2)	−0.0122 (3)
O1	0.0678 (12)	0.0615 (11)	0.0899 (14)	0.0065 (9)	−0.0001 (10)	0.0109 (11)
O2	0.0582 (10)	0.0570 (11)	0.0721 (11)	−0.0043 (8)	0.0187 (8)	−0.0292 (8)
O3	0.0745 (11)	0.0880 (13)	0.0322 (8)	−0.0219 (9)	0.0160 (7)	−0.0020 (8)
N1	0.0362 (9)	0.0476 (11)	0.0390 (10)	−0.0071 (8)	0.0112 (8)	−0.0081 (8)
C1	0.0305 (11)	0.0500 (13)	0.0459 (12)	−0.0037 (10)	0.0106 (9)	−0.0006 (11)
C2	0.0355 (11)	0.0593 (14)	0.0388 (12)	−0.0048 (11)	0.0091 (9)	0.0004 (11)
C3	0.0332 (11)	0.0498 (14)	0.0384 (12)	−0.0092 (10)	0.0119 (9)	−0.0058 (10)
C4	0.0502 (14)	0.0605 (16)	0.0506 (13)	−0.0152 (12)	0.0137 (11)	−0.0164 (13)
C5	0.0657 (16)	0.0443 (14)	0.0737 (18)	−0.0122 (12)	0.0253 (14)	−0.0141 (14)
C6	0.0661 (16)	0.0451 (15)	0.0672 (17)	−0.0050 (12)	0.0175 (13)	0.0078 (13)
C7	0.0575 (15)	0.0532 (15)	0.0433 (13)	−0.0113 (12)	0.0105 (11)	0.0025 (12)
C8	0.0367 (11)	0.0423 (13)	0.0392 (12)	−0.0102 (10)	0.0154 (9)	−0.0040 (10)
C9	0.0426 (14)	0.0569 (16)	0.0715 (17)	−0.0014 (12)	0.0070 (12)	−0.0052 (14)
C10	0.0469 (14)	0.0591 (15)	0.0485 (13)	0.0016 (11)	0.0082 (11)	0.0058 (12)
C11	0.0592 (16)	0.0840 (19)	0.0619 (16)	−0.0138 (15)	0.0235 (13)	0.0115 (14)
C12	0.0386 (14)	0.102 (2)	0.0726 (18)	−0.0104 (15)	0.0182 (13)	−0.0179 (17)
C13	0.0404 (14)	0.0761 (18)	0.0761 (18)	0.0096 (13)	−0.0004 (13)	−0.0081 (15)
C14	0.0515 (14)	0.0565 (15)	0.0476 (13)	−0.0034 (12)	0.0028 (11)	0.0012 (11)
C15	0.0360 (11)	0.0449 (12)	0.0313 (10)	−0.0040 (10)	0.0029 (8)	−0.0027 (10)

Geometric parameters (Å, º) top

S1—O3	1.4191 (15)	C6—C7	1.373 (3)
S1—O2	1.4220 (16)	C6—H6	0.93
S1—N1	1.6708 (16)	C7—C8	1.382 (3)
S1—C15	1.755 (2)	C7—H7	0.93
O1—C9	1.195 (3)	C9—H9	0.93
N1—C8	1.417 (2)	C10—C15	1.375 (3)
N1—C1	1.434 (2)	C10—C11	1.384 (3)
C1—C2	1.339 (3)	C10—H10	0.93
C1—C9	1.468 (3)	C11—C12	1.366 (4)
C2—C3	1.423 (3)	C11—H11	0.93
C2—H2	0.93	C12—C13	1.362 (3)
C3—C4	1.390 (3)	C12—H12	0.93
C3—C8	1.403 (3)	C13—C14	1.376 (3)
C4—C5	1.367 (3)	C13—H13	0.93
C4—H4	0.93	C14—C15	1.371 (3)
C5—C6	1.390 (3)	C14—H14	0.93
C5—H5	0.93

O3—S1—O2	120.63 (10)	C6—C7—C8	117.4 (2)
O3—S1—N1	106.48 (9)	C6—C7—H7	121.3
O2—S1—N1	106.40 (9)	C8—C7—H7	121.3
O3—S1—C15	108.37 (10)	C7—C8—C3	121.63 (19)
O2—S1—C15	109.04 (10)	C7—C8—N1	130.82 (18)
N1—S1—C15	104.80 (8)	C3—C8—N1	107.53 (17)
C8—N1—C1	106.96 (15)	O1—C9—C1	121.2 (2)
C8—N1—S1	119.99 (13)	O1—C9—H9	119.4
C1—N1—S1	123.09 (14)	C1—C9—H9	119.4
C2—C1—N1	108.53 (18)	C15—C10—C11	118.7 (2)
C2—C1—C9	125.7 (2)	C15—C10—H10	120.7
N1—C1—C9	125.00 (19)	C11—C10—H10	120.7
C1—C2—C3	109.67 (18)	C12—C11—C10	120.5 (2)
C1—C2—H2	125.2	C12—C11—H11	119.8
C3—C2—H2	125.2	C10—C11—H11	119.8
C4—C3—C8	119.5 (2)	C13—C12—C11	120.4 (2)
C4—C3—C2	133.3 (2)	C13—C12—H12	119.8
C8—C3—C2	107.27 (18)	C11—C12—H12	119.8
C5—C4—C3	119.0 (2)	C12—C13—C14	120.0 (2)
C5—C4—H4	120.5	C12—C13—H13	120.0
C3—C4—H4	120.5	C14—C13—H13	120.0
C4—C5—C6	120.6 (2)	C15—C14—C13	119.6 (2)
C4—C5—H5	119.7	C15—C14—H14	120.2
C6—C5—H5	119.7	C13—C14—H14	120.2
C7—C6—C5	121.9 (2)	C14—C15—C10	120.8 (2)
C7—C6—H6	119.1	C14—C15—S1	120.28 (17)
C5—C6—H6	119.1	C10—C15—S1	118.89 (16)

O3—S1—N1—C8	−53.53 (16)	C4—C3—C8—N1	−178.29 (17)
O2—S1—N1—C8	176.62 (14)	C2—C3—C8—N1	0.5 (2)
C15—S1—N1—C8	61.18 (16)	C1—N1—C8—C7	−179.9 (2)
O3—S1—N1—C1	165.38 (15)	S1—N1—C8—C7	33.4 (3)
O2—S1—N1—C1	35.52 (17)	C1—N1—C8—C3	−1.55 (19)
C15—S1—N1—C1	−79.91 (16)	S1—N1—C8—C3	−148.17 (13)
C8—N1—C1—C2	2.0 (2)	C2—C1—C9—O1	−15.8 (3)
S1—N1—C1—C2	147.38 (14)	N1—C1—C9—O1	175.04 (19)
C8—N1—C1—C9	172.76 (18)	C15—C10—C11—C12	−0.2 (4)
S1—N1—C1—C9	−41.9 (3)	C10—C11—C12—C13	0.7 (4)
N1—C1—C2—C3	−1.7 (2)	C11—C12—C13—C14	−0.7 (4)
C9—C1—C2—C3	−172.36 (19)	C12—C13—C14—C15	0.4 (4)
C1—C2—C3—C4	179.4 (2)	C13—C14—C15—C10	0.1 (3)
C1—C2—C3—C8	0.7 (2)	C13—C14—C15—S1	−179.84 (17)
C8—C3—C4—C5	−0.7 (3)	C11—C10—C15—C14	−0.2 (3)
C2—C3—C4—C5	−179.1 (2)	C11—C10—C15—S1	179.77 (17)
C3—C4—C5—C6	0.7 (3)	O3—S1—C15—C14	11.35 (19)
C4—C5—C6—C7	−0.4 (4)	O2—S1—C15—C14	144.39 (17)
C5—C6—C7—C8	0.0 (3)	N1—S1—C15—C14	−102.03 (17)
C6—C7—C8—C3	0.1 (3)	O3—S1—C15—C10	−168.59 (16)
C6—C7—C8—N1	178.25 (19)	O2—S1—C15—C10	−35.55 (19)
C4—C3—C8—C7	0.3 (3)	N1—S1—C15—C10	78.03 (18)
C2—C3—C8—C7	179.11 (18)

Hydrogen-bond geometry (Å, º) top

Cg2 is the centroid of the C3–C8 ring.

D—H···A	D—H	H···A	D···A	D—H···A
C7—H7···O3	0.93	2.44	3.014 (3)	120
C9—H9···O2	0.93	2.34	2.869 (3)	116
C4—H4···O1ⁱ	0.93	2.51	3.343 (3)	150
C12—H12···Cg2ⁱⁱ	0.93	2.71	3.638 (3)	174

Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x+1, −y+1, −z+1.

Funding information

Rectoría and Vicerrectoría de Investigación, Universidad de Costa Rica are acknowledged for funding the purchase of a D8 Venture SC XRD.

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https://doi.org/10.1107/S2414314622004011

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organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

1-(Phenyl­sulfon­yl)-1H-indole-2-carbaldehyde

Structure description

Synthesis and crystallization

Refinement

Structural data

Funding information

References

organic compounds

1-(Phenylsulfonyl)-1H-indole-2-carbaldehyde