metal-organic compounds
Poly[(μ4-5,7-dihydro-1H,3H-dithieno[3,4-b:3′,4′-e]pyrazine-κ4N:N′:S:S′)tetra-μ3-iodido-tetracopper]: a three-dimensional copper(I) coordination polymer
aInstitute of Chemistry, University of Neuchâtel, Av. de Bellevax 51, CH-2000 Neuchâtel, Switzerland, and bInstitute of Physics, University of Neuchâtel, rue Emile-Argand 11, CH-2000 Neuchâtel, Switzerland
*Correspondence e-mail: helen.stoeckli-evans@unine.ch
The reaction of ligand 5,7-dihydro-1H,3H-dithieno[3,4-b:3′,4′-e]pyrazine (L) with CuI lead to the formation of a three-dimensional coordination polymer, incorporating the well known [CuxIx]n staircase motif (x = 4). These polymer [Cu4I4]n chains are linked via the N and S atoms of the ligand to form the three-dimensional coordination polymer poly[(μ4-5,7-dihydro-1H,3H-dithieno[3,4-b:3′,4′-e]pyrazine-κ4N:N′:S:S′)tetra-μ3-iodido-tetracopper], [Cu4I4(C8H8N2S2)]n (I). The is composed of half a ligand molecule, with the pyrazine ring located about a center of symmetry, and two independent copper(I) atoms and two independent I− ions forming the staircase motif via centers of inversion symmetry. The framework is consolidated by C—H⋯I hydrogen bonds.
Keywords: crystal structure; copper(I) iodide; pyrazine; pyrazinethiophane; three-dimensional coordination polymer; framework.
CCDC reference: 1991908
Structure description
We have recently shown that the reaction of the ligand 5,7-dihydro-1H,3H-dithieno[3,4-b:3′,4′-e]pyrazine (L), with silver(I) nitrate leads to the formation of a two-dimensional coordination polymer, with the silver atom coordinating only to the S atoms of the ligand so forming chains. The nitrato anion bridges two equivalent silver atoms and so generates the network structure (Assoumatine & Stoeckli-Evans, 2020a). Ligand L is one of a series of pyrazinethiophanes synthesized to study their coordination chemistry with various transition metals (Assoumatine, 1999). The reaction of L with CuCl2 and CuBr2 lead to the formation of isostructural one-dimensional coordination polymers with the ligand coordinating to the copper atom via the N atoms only (Assoumatine & Stoeckli-Evans, 2020b).
The reaction of L with CuI has lead to the formation of a three-dimensional coordination polymer, incorporating the well known [CuxIx]n staircase motif (x = 4; Fig. 1). The is composed of half a ligand molecule, with the pyrazine ring located about a center of symmetry, and two independent copper(I) atoms and two independent I− ions forming the staircase motif via centers of inversion symmetry. The polymer [Cu4I4]n chains are linked via the N and S atoms of the ligand to form the three-dimensional framework of complex I (Fig. 2).
In the ligand, the five-membered thiophene rings are not planar, but have envelope configurations with the S atom as the flap. Atom S1 deviates by 0.5076 (14) Å from the mean plane of the four C atoms (C1–C4). This is considerably more than in the silver(I) nitrate two-dimensional coordination polymer or the ligand itself (Assoumatine & Stoeckli-Evans, 2020a). In the former, the S atom deviates from the mean plane of the four C atoms by 0.170 (15) Å, and in the latter by only 0.0256 (8) Å.
Selected bond lengths and bond angles involving the copper(I) atoms in I are given in Table 1. In I, both copper(I) atoms are fourfold coordinate; the Cu⋯Cu distances are not considered as bonds. Hence, atom Cu1 has a fourfold CuSI3 coordination geometry with the fourfold index parameter τ4 = 0.91 (τ4 = 1 for a perfect tetrahedral geometry, 0 for a perfect square-planar geometry and 0.85 for perfect trigonal–pyramidal geometry; Yang et al., 2007). Atom Cu2 has a CuNI3 coordination geometry with a fourfold index parameter τ4 = 0.88. Hence, both atoms have similar distorted shapes, neither perfect tetrahedral nor perfect trigonal–pyramidal. The Cu—N, Cu—S and Cu—I bond lengths are within normal values and are discussed below.
In the crystal of I, the three-dimensional structure is consolidated by C—H⋯I hydrogen bonds (Table 2).
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There are less than 15 polymeric structures in the Cambridge Structural Database (CSD; Version 5.41, last update November 2019; Groom et al., 2016) that concern pyrazine ligands and the [CuxIx]n staircase motif (see file S1 in the supporting information). The majority form two-dimensional coordination polymers with the pyrazine ligand bridging the [CuxIx]n chains. For example, catena-[bis(μ3-iodo)(μ2-pyrazine-N,N′)dicopper(I)] (CSD refcode AGIYEU01 at 203 K; Blake et al., 1999) and catena-[bis(μ3-iodo)(μ3-bis(6-methylpyrazin-2-ylmethyl)thioether-N,N′,N′′,S)(μ2-iodo)tricopper(I)] (RABBUS at 123 K; Amoore et al., 2003). In AGIYEU01, the copper atom has a CuNI3 fourfold coordination geometry with a τ4 index parameter of 0.90. In the case of RABBUS, there are three copper(I) atoms. Two of the copper atoms have CuNI3 fourfold coordination geometries with τ4 index parameters of 0.92 and 0.89. The third copper atom has a CuNSI2 fourfold coordination geometry with a τ4 index parameter of 0.73. In comparison, the τ4 index parameters for the two copper atoms in I are 0.91 and 0.85.
In AGIYEU01, the Cu—Npyrazine bond length is 2.028 (9) Å. In RABBUS the copper(I) atoms coordinate to the pyrazine N atoms and the S atom of the ligand. Here, the Cu—Npyrazine bond lengths are 2.053 (4), 2.070 (4) and 2.071 (4) Å and the Cu—S bond length is 2.3574 (15) Å. In I, the Cu2—Niv and Cu1—S1 bond lengths of 2.059 (4) and 2.3393 (16) Å, respectively, are very similar to those sited above. The Cu—I bond lengths involving the [CuxIx]n staircase motifs are very similar in all three compounds; they vary from 2.6131 (15) to 2.6485 (15) Å in AGIYEU01, from 2.5993 (7) to 2.8348 (7) Å in RABBUS, and from 2.6418 (8) to 2.7142 (9) Å in I. The Cu⋯Cu distances in I, Cu1—Cu1i = 2.7355 (16) Å and Cu1—Cu2ii = 2.9030 (14) Å, are similar to those in AGIYEU01 [2.7562 (19) Å] and RABUSS [2.6546 (8), 2.7565 (9) and 2.9256 (8) Å].
Synthesis and crystallization
The synthesis and H,3H-dithieno[3,4-b:3′,4′-e]pyrazine (L), have been reported (Assoumatine & Stoeckli-Evans, 2020a).
of the ligand 5,7-dihydro-1Synthesis of compound I: A solution of L (15 mg, 0.08 mmol) in CH2Cl2 (10 ml) was introduced into a 16 mm diameter glass tube and layered with MeCN (2 ml) as a buffer zone. Then a solution of CuI (15 mg, 0.08 mmol) in MeCN (5 ml) was added very gently to avoid possible mixing. The glass tube was sealed under an atmosphere of nitrogen and left in the dark at room temperature for at least 2 weeks, whereupon deep-orange plate-like crystals of the title compound, (I), were isolated in the buffer zone. Analysis for C8H8N2S2Cu4I4 (Mr = 958.14 g mol−1): calculated (%): C 10.03, H 0.84, N 2.92, S 6.69; found (%): C 10.12, H 0.80, N 2.82, S 6.67. The IR spectrum is shown in Fig. S1 of the supporting information.
Refinement
Crystal data, data collection and structure . A Stoe IPDS-I one-circle diffractometer was used for the data collection at RT. With this instrument for the triclinic system often a small cusp of data is inaccessible; here 176 reflections which gives the alert diffrn_reflns_laue_measured_fraction_full value (0.889) below minimum (0.95). The effect here appears to be limited if one compares the bond lengths in the structure of the pure ligand (Assoumatine & Stoeckli-Evans, 2020a) with those of the ligand in complex I; they are the same within 3 s.u.s.
details are summarized in Table 3
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The residual electron-density peaks, Δρmax = 1.73 e Å−3, and Δρmin = −1.58 e Å−3, are located near the iodine atoms (within 0.80 to 1.13 Å). As stated by Spek (2018): `they can be interpreted as absorption artefacts due to insufficient or incorrect correction for absorption'; the Tmin and Tmax values of 0.188 and 1.000, respectively, are rather extreme. However, in our experience high residual electron-density peaks are often observed for compounds containing heavy atoms such as iodine.
Structural data
CCDC reference: 1991908
https://doi.org/10.1107/S2414314620004010/lh4055sup1.cif
contains datablocks I, Global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314620004010/lh4055Isup2.hkl
CSD search. DOI: https://doi.org/10.1107/S2414314620004010/lh4055sup3.pdf
The IR spectrum. DOI: https://doi.org/10.1107/S2414314620004010/lh4055sup4.tif
Data collection: EXPOSE in IPDS-I (Stoe & Cie, 1998); cell
CELL in IPDS-I (Stoe & Cie, 1998); data reduction: INTEGRATE in IPDS-I (Stoe & Cie, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: SHELXL2018 (Sheldrick, 2015), PLATON (Spek, 2020) and publCIF (Westrip, 2010).[Cu4I4(C8H8N2S2)] | Z = 1 |
Mr = 958.04 | F(000) = 430 |
Triclinic, P1 | Dx = 3.572 Mg m−3 |
a = 7.0082 (8) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.378 (1) Å | Cell parameters from 5000 reflections |
c = 8.8162 (10) Å | θ = 3.3–25.8° |
α = 102.808 (13)° | µ = 11.87 mm−1 |
β = 104.607 (13)° | T = 293 K |
γ = 109.369 (13)° | Plate, orange |
V = 445.35 (10) Å3 | 0.50 × 0.35 × 0.13 mm |
Stoe IPDS-1 diffractometer | 1515 independent reflections |
Radiation source: fine-focus sealed tube | 1452 reflections with I > 2σ(I) |
Plane graphite monochromator | Rint = 0.038 |
φ rotation scans | θmax = 25.8°, θmin = 3.3° |
Absorption correction: multi-scan (MULABS; Spek, 2020) | h = −8→8 |
Tmin = 0.188, Tmax = 1.000 | k = −10→10 |
3272 measured reflections | l = −10→10 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.040 | H-atom parameters constrained |
wR(F2) = 0.103 | w = 1/[σ2(Fo2) + (0.0717P)2 + 0.7287P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
1515 reflections | Δρmax = 1.73 e Å−3 |
92 parameters | Δρmin = −1.58 e Å−3 |
0 restraints | Extinction correction: (SHELXL2018; Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.016 (3) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
I1 | 0.57925 (5) | 0.17176 (5) | 0.88315 (4) | 0.0210 (2) | |
I2 | 0.21064 (6) | 0.27610 (5) | 1.19497 (4) | 0.0241 (2) | |
Cu1 | 0.90704 (13) | 0.07739 (12) | 0.89969 (10) | 0.0309 (3) | |
Cu2 | 0.53098 (11) | 0.18093 (10) | 1.18047 (9) | 0.0261 (2) | |
S1 | 1.0313 (2) | 0.16243 (17) | 0.69503 (15) | 0.0198 (3) | |
N1 | 1.1948 (7) | 0.6290 (6) | 0.6269 (5) | 0.0153 (9) | |
C1 | 0.9013 (8) | 0.3374 (7) | 0.5075 (6) | 0.0157 (10) | |
C2 | 1.0949 (8) | 0.4665 (7) | 0.6316 (6) | 0.0173 (10) | |
C3 | 0.8095 (8) | 0.1646 (8) | 0.5351 (6) | 0.0227 (12) | |
H3A | 0.759686 | 0.064557 | 0.433563 | 0.027* | |
H3B | 0.689123 | 0.157278 | 0.572613 | 0.027* | |
C4 | 1.1768 (9) | 0.4053 (7) | 0.7736 (6) | 0.0235 (11) | |
H4A | 1.146935 | 0.457309 | 0.869883 | 0.028* | |
H4B | 1.331493 | 0.439565 | 0.804763 | 0.028* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.0227 (3) | 0.0192 (3) | 0.0175 (3) | 0.00881 (19) | 0.00387 (17) | 0.00296 (18) |
I2 | 0.0207 (3) | 0.0222 (3) | 0.0265 (3) | 0.0103 (2) | 0.00545 (18) | 0.00384 (18) |
Cu1 | 0.0322 (4) | 0.0328 (5) | 0.0296 (4) | 0.0143 (4) | 0.0077 (3) | 0.0158 (3) |
Cu2 | 0.0223 (4) | 0.0226 (4) | 0.0229 (4) | 0.0062 (3) | 0.0000 (3) | 0.0025 (3) |
S1 | 0.0224 (6) | 0.0158 (7) | 0.0185 (6) | 0.0074 (5) | 0.0034 (5) | 0.0057 (5) |
N1 | 0.0137 (18) | 0.018 (2) | 0.0127 (19) | 0.0066 (17) | 0.0032 (15) | 0.0036 (16) |
C1 | 0.015 (2) | 0.015 (2) | 0.016 (2) | 0.005 (2) | 0.0047 (18) | 0.0048 (19) |
C2 | 0.017 (2) | 0.020 (3) | 0.014 (2) | 0.010 (2) | 0.0030 (19) | 0.004 (2) |
C3 | 0.020 (3) | 0.026 (3) | 0.016 (2) | 0.009 (2) | −0.0015 (19) | 0.005 (2) |
C4 | 0.027 (3) | 0.016 (3) | 0.018 (2) | 0.004 (2) | −0.002 (2) | 0.006 (2) |
Cu1—Cu1i | 2.7355 (16) | S1—C3 | 1.825 (5) |
Cu1—Cu2ii | 2.9030 (14) | N1—C2 | 1.324 (7) |
Cu1—S1 | 2.3393 (16) | N1—C1v | 1.345 (6) |
I1—Cu1 | 2.6477 (9) | C1—C2 | 1.400 (7) |
I2—Cu1iii | 2.6478 (11) | C1—C3 | 1.478 (8) |
I2—Cu1ii | 2.6617 (10) | C2—C4 | 1.509 (7) |
Cu2—N1iv | 2.059 (4) | C3—H3A | 0.9700 |
I1—Cu2ii | 2.6786 (9) | C3—H3B | 0.9700 |
I1—Cu2 | 2.7142 (9) | C4—H4A | 0.9700 |
I2—Cu2 | 2.6418 (8) | C4—H4B | 0.9700 |
S1—C4 | 1.817 (6) | ||
Cu1—I1—Cu2ii | 66.05 (3) | I2—Cu2—Cu1ii | 57.14 (3) |
Cu1—I1—Cu2 | 103.29 (3) | I1ii—Cu2—Cu1ii | 56.46 (3) |
Cu2ii—I1—Cu2 | 86.52 (3) | I1—Cu2—Cu1ii | 105.41 (3) |
Cu2—I2—Cu1iii | 102.73 (3) | C4—S1—C3 | 93.7 (2) |
Cu2—I2—Cu1ii | 66.37 (3) | C4—S1—Cu1 | 107.46 (19) |
Cu1iii—I2—Cu1ii | 62.02 (3) | C3—S1—Cu1 | 109.11 (19) |
S1—Cu1—I1 | 104.34 (4) | C2—N1—C1v | 115.3 (4) |
S1—Cu1—I2vi | 108.74 (5) | C2—N1—Cu2iv | 121.6 (3) |
I1—Cu1—I2vi | 107.06 (3) | C1v—N1—Cu2iv | 123.0 (4) |
S1—Cu1—I2ii | 104.10 (5) | N1v—C1—C2 | 121.5 (5) |
I1—Cu1—I2ii | 113.66 (3) | N1v—C1—C3 | 122.6 (4) |
I2vi—Cu1—I2ii | 117.98 (3) | C2—C1—C3 | 115.9 (4) |
S1—Cu1—Cu1i | 123.23 (6) | N1—C2—C1 | 123.2 (5) |
I1—Cu1—Cu1i | 132.41 (5) | N1—C2—C4 | 122.9 (5) |
I2vi—Cu1—Cu1i | 59.24 (3) | C1—C2—C4 | 113.9 (5) |
I2ii—Cu1—Cu1i | 58.74 (4) | C1—C3—S1 | 105.0 (3) |
S1—Cu1—Cu2ii | 121.87 (5) | C1—C3—H3A | 110.7 |
I1—Cu1—Cu2ii | 57.49 (3) | S1—C3—H3A | 110.7 |
I2vi—Cu1—Cu2ii | 129.10 (4) | C1—C3—H3B | 110.7 |
I2ii—Cu1—Cu2ii | 56.48 (3) | S1—C3—H3B | 110.7 |
Cu1i—Cu1—Cu2ii | 94.20 (5) | H3A—C3—H3B | 108.8 |
N1iv—Cu2—I2 | 107.06 (12) | C2—C4—S1 | 105.1 (4) |
N1iv—Cu2—I1ii | 122.19 (13) | C2—C4—H4A | 110.7 |
I2—Cu2—I1ii | 113.30 (3) | S1—C4—H4A | 110.7 |
N1iv—Cu2—I1 | 110.69 (13) | C2—C4—H4B | 110.7 |
I2—Cu2—I1 | 108.98 (3) | S1—C4—H4B | 110.7 |
I1ii—Cu2—I1 | 93.48 (3) | H4A—C4—H4B | 108.8 |
N1iv—Cu2—Cu1ii | 143.81 (13) | ||
C1v—N1—C2—C1 | −0.7 (8) | N1v—C1—C3—S1 | 164.0 (4) |
Cu2iv—N1—C2—C1 | 176.2 (4) | C2—C1—C3—S1 | −16.8 (6) |
C1v—N1—C2—C4 | −179.2 (5) | C4—S1—C3—C1 | 22.5 (4) |
Cu2iv—N1—C2—C4 | −2.3 (7) | Cu1—S1—C3—C1 | 132.4 (3) |
N1v—C1—C2—N1 | 0.7 (8) | N1—C2—C4—S1 | −164.6 (4) |
C3—C1—C2—N1 | −178.6 (5) | C1—C2—C4—S1 | 16.7 (6) |
N1v—C1—C2—C4 | 179.3 (4) | C3—S1—C4—C2 | −22.5 (4) |
C3—C1—C2—C4 | 0.1 (7) | Cu1—S1—C4—C2 | −133.8 (3) |
Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+1, −y, −z+2; (iii) x−1, y, z; (iv) −x+2, −y+1, −z+2; (v) −x+2, −y+1, −z+1; (vi) x+1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3B···I1 | 0.97 | 3.01 | 3.808 (6) | 140 |
C3—H3A···I1vii | 0.97 | 2.91 | 3.767 (5) | 149 |
C4—H4A···I1iv | 0.97 | 3.00 | 3.641 (5) | 124 |
Symmetry codes: (iv) −x+2, −y+1, −z+2; (vii) −x+1, −y, −z+1. |
Acknowledgements
HSE is grateful to the University of Neuchâtel for their support over the years.
Funding information
Funding for this research was provided by: Swiss National Science Foundation and the University of Neuchâtel.
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