organic compounds
(3S,5R,6S)-Diphenylmethyl 1-oxo-6-bromopenicillanate
aDepartment of Chemistry, Periyar Maniammai Institute of Science and Technology, Vallam-613 403, Thanjavur, Tamil Nadu, India, and bDepartment of Chemistry, Government Arts College, Tiruchirappalli- 620 022, Tamil Nadu, India
*Correspondence e-mail: xrdsethu@gmail.com
In the title compound, C21H20BrNO4S, a key intermediate in the synthesis of the widely used β-lactamase inhibitor tazobactam, the five-membered thiazolidine ring adopts an and the four-membered azetidine ring is in a distorted planar conformation. The features C—H⋯O hydrogen bonds and a weak C—H⋯π interaction.
CCDC reference: 1981292
Structure description
The title compound (Fig. 1) is a key intermediate for the synthesis of tazobactam, a widely used β-lactamase inhibitor (Bai et al., 2001). The five-membered thiazolidine ring (N1/C3/C2/S1/C5) adopts an with an r.m.s deviation of 0.318 Å and a maximum deviation of 0.305 (1) Å for atom S1. The four-membered azetidine ring (N1/C5–C7) is in a distorted planar conformation, with an r.m.s deviation of 0.052 Å. The dihedral angle between the mean planes of these rings is 49.7 (2)°. The two phenyl rings of the diphenylmethyl group are inclined at an angle of 79.0 (2)°.
In the crystal (Fig. 2), the molecules self-assemble via C21—H21⋯O2 and C22—H22⋯O1 hydrogen bonds (Table 1), forming a three-dimensional network. Weak C—H⋯π interactions involving the C18–C23 ring also occur.
Synthesis and crystallization
The title compound, which was a gift sample from Orchid Pharmaceutical Ltd, India, prepared according to the procedure of Xu et al. (2005), was dissolved in acetonitrile. It was heated over a water bath for few minutes and the resultant solution was allowed to cool. After a week, transparent yellow block-shaped crystals separated out.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2Structural data
CCDC reference: 1981292
https://doi.org/10.1107/S2414314620001431/is4040sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314620001431/is4040Isup2.hkl
Data collection: APEX2 (Bruker, 2004); cell
APEX2 (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: ORTEP-3 (Farrugia, 2012); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015).C21H20BrNO4S | Dx = 1.519 Mg m−3 |
Mr = 462.35 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, P41 | Cell parameters from 5313 reflections |
Hall symbol: P 4w | θ = 2.2–20.7° |
a = 11.076 (2) Å | µ = 2.16 mm−1 |
c = 16.478 (3) Å | T = 293 K |
V = 2021.4 (7) Å3 | Block, yellow |
Z = 4 | 0.30 × 0.25 × 0.20 mm |
F(000) = 944 |
Bruker Kappa APEXII CCD diffractometer | 4005 independent reflections |
Radiation source: fine-focus sealed tube | 2553 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.072 |
ω and φ scan | θmax = 26.1°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −13→13 |
Tmin = 0.563, Tmax = 0.672 | k = −13→13 |
20917 measured reflections | l = −20→20 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H-atom parameters constrained |
wR(F2) = 0.083 | w = 1/[σ2(Fo2) + (0.0349P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.89 | (Δ/σ)max < 0.001 |
4005 reflections | Δρmax = 0.20 e Å−3 |
255 parameters | Δρmin = −0.27 e Å−3 |
1 restraint | Absolute structure: Flack (1983) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.016 (8) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.00718 (4) | −0.08038 (4) | 0.19956 (3) | 0.07083 (18) | |
S1 | 0.35274 (8) | 0.13083 (9) | 0.18370 (7) | 0.0532 (3) | |
O1 | 0.3126 (3) | 0.1885 (3) | 0.10598 (17) | 0.0729 (9) | |
O2 | −0.0067 (3) | 0.2442 (3) | 0.16015 (19) | 0.0668 (9) | |
O3 | 0.1395 (2) | 0.3262 (2) | 0.39477 (18) | 0.0509 (7) | |
O4 | 0.2319 (2) | 0.4801 (2) | 0.33087 (14) | 0.0433 (7) | |
N1 | 0.1482 (2) | 0.1911 (2) | 0.24983 (18) | 0.0340 (7) | |
C2 | 0.3557 (3) | 0.2540 (3) | 0.2593 (3) | 0.0478 (11) | |
C3 | 0.2217 (3) | 0.2991 (3) | 0.2603 (2) | 0.0355 (9) | |
H3 | 0.2088 | 0.3525 | 0.2137 | 0.043* | |
C5 | 0.2117 (3) | 0.0786 (3) | 0.2304 (2) | 0.0393 (10) | |
H5 | 0.2207 | 0.0213 | 0.2753 | 0.047* | |
C6 | 0.1117 (3) | 0.0491 (3) | 0.1688 (2) | 0.0433 (10) | |
H6 | 0.1423 | 0.0410 | 0.1132 | 0.052* | |
C7 | 0.0661 (3) | 0.1762 (3) | 0.1875 (3) | 0.0429 (9) | |
C8 | 0.3934 (4) | 0.1997 (4) | 0.3415 (3) | 0.0725 (15) | |
H8A | 0.4010 | 0.2630 | 0.3809 | 0.109* | |
H8B | 0.4695 | 0.1591 | 0.3357 | 0.109* | |
H8C | 0.3333 | 0.1431 | 0.3591 | 0.109* | |
C9 | 0.4420 (4) | 0.3490 (4) | 0.2290 (4) | 0.090 (2) | |
H9A | 0.4384 | 0.4183 | 0.2640 | 0.135* | |
H9B | 0.4200 | 0.3722 | 0.1749 | 0.135* | |
H9C | 0.5226 | 0.3172 | 0.2290 | 0.135* | |
C10 | 0.1903 (3) | 0.3669 (3) | 0.3367 (2) | 0.0385 (9) | |
C11 | 0.2093 (3) | 0.5603 (3) | 0.4013 (2) | 0.0392 (9) | |
H11 | 0.2150 | 0.5123 | 0.4511 | 0.047* | |
C12 | 0.0850 (3) | 0.6124 (3) | 0.3960 (3) | 0.0385 (9) | |
C13 | 0.0227 (4) | 0.6223 (4) | 0.3241 (3) | 0.0489 (11) | |
H13 | 0.0566 | 0.5940 | 0.2761 | 0.059* | |
C14 | −0.0922 (4) | 0.6754 (4) | 0.3235 (3) | 0.0641 (13) | |
H14 | −0.1342 | 0.6831 | 0.2749 | 0.077* | |
C15 | −0.1417 (4) | 0.7151 (4) | 0.3933 (4) | 0.0660 (13) | |
H15 | −0.2187 | 0.7483 | 0.3925 | 0.079* | |
C16 | −0.0808 (4) | 0.7075 (4) | 0.4651 (3) | 0.0628 (13) | |
H16 | −0.1156 | 0.7363 | 0.5127 | 0.075* | |
C17 | 0.0334 (4) | 0.6563 (3) | 0.4664 (3) | 0.0508 (11) | |
H17 | 0.0756 | 0.6515 | 0.5150 | 0.061* | |
C18 | 0.3106 (3) | 0.6508 (3) | 0.4006 (2) | 0.0370 (9) | |
C19 | 0.3129 (4) | 0.7455 (4) | 0.3469 (3) | 0.0479 (11) | |
H19 | 0.2509 | 0.7545 | 0.3094 | 0.057* | |
C20 | 0.4071 (4) | 0.8277 (4) | 0.3484 (3) | 0.0542 (12) | |
H20 | 0.4083 | 0.8914 | 0.3116 | 0.065* | |
C21 | 0.4986 (4) | 0.8154 (4) | 0.4038 (3) | 0.0568 (12) | |
H21 | 0.5617 | 0.8708 | 0.4047 | 0.068* | |
C22 | 0.4969 (3) | 0.7212 (4) | 0.4581 (3) | 0.0597 (12) | |
H22 | 0.5587 | 0.7129 | 0.4959 | 0.072* | |
C23 | 0.4040 (3) | 0.6394 (3) | 0.4562 (3) | 0.0486 (10) | |
H23 | 0.4036 | 0.5755 | 0.4928 | 0.058* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0570 (3) | 0.0518 (3) | 0.1037 (4) | −0.0182 (2) | 0.0112 (3) | −0.0148 (3) |
S1 | 0.0352 (5) | 0.0467 (6) | 0.0777 (9) | −0.0011 (4) | 0.0143 (6) | −0.0181 (6) |
O1 | 0.075 (2) | 0.090 (2) | 0.054 (2) | −0.0136 (18) | 0.0229 (18) | −0.0001 (18) |
O2 | 0.0562 (19) | 0.0591 (19) | 0.085 (2) | 0.0144 (16) | −0.0230 (16) | 0.0023 (17) |
O3 | 0.0619 (18) | 0.0393 (16) | 0.0516 (17) | −0.0119 (13) | 0.0178 (16) | −0.0062 (14) |
O4 | 0.0485 (15) | 0.0305 (14) | 0.0509 (17) | −0.0064 (12) | 0.0093 (13) | −0.0076 (12) |
N1 | 0.0290 (16) | 0.0246 (16) | 0.0486 (19) | 0.0025 (12) | 0.0027 (15) | −0.0078 (14) |
C2 | 0.030 (2) | 0.043 (2) | 0.070 (3) | −0.0048 (19) | 0.012 (2) | −0.015 (2) |
C3 | 0.035 (2) | 0.0265 (19) | 0.046 (2) | −0.0021 (16) | 0.0077 (18) | −0.0008 (17) |
C5 | 0.039 (2) | 0.032 (2) | 0.047 (3) | 0.0025 (17) | 0.0037 (18) | −0.0097 (17) |
C6 | 0.043 (2) | 0.038 (2) | 0.049 (3) | −0.0055 (17) | 0.0026 (19) | −0.0081 (19) |
C7 | 0.042 (2) | 0.034 (2) | 0.053 (3) | −0.0004 (17) | −0.001 (2) | −0.002 (2) |
C8 | 0.052 (3) | 0.083 (4) | 0.082 (4) | 0.016 (2) | −0.023 (3) | −0.030 (3) |
C9 | 0.058 (3) | 0.061 (3) | 0.151 (6) | −0.027 (3) | 0.045 (3) | −0.033 (3) |
C10 | 0.033 (2) | 0.030 (2) | 0.053 (3) | −0.0017 (17) | 0.002 (2) | −0.009 (2) |
C11 | 0.048 (2) | 0.032 (2) | 0.038 (2) | −0.0027 (17) | 0.0054 (19) | −0.0052 (18) |
C12 | 0.039 (2) | 0.030 (2) | 0.046 (2) | −0.0059 (16) | 0.000 (2) | −0.0033 (18) |
C13 | 0.044 (2) | 0.047 (2) | 0.056 (3) | −0.0034 (19) | 0.000 (2) | −0.011 (2) |
C14 | 0.046 (3) | 0.063 (3) | 0.083 (4) | −0.006 (2) | −0.015 (3) | −0.010 (3) |
C15 | 0.047 (3) | 0.044 (3) | 0.107 (4) | 0.001 (2) | −0.001 (3) | −0.007 (3) |
C16 | 0.061 (3) | 0.049 (3) | 0.079 (4) | 0.010 (2) | 0.020 (3) | −0.010 (3) |
C17 | 0.061 (3) | 0.042 (2) | 0.049 (3) | 0.007 (2) | 0.005 (2) | −0.007 (2) |
C18 | 0.033 (2) | 0.032 (2) | 0.046 (2) | 0.0010 (16) | −0.0013 (18) | −0.0067 (19) |
C19 | 0.040 (2) | 0.048 (3) | 0.057 (3) | −0.0060 (19) | −0.006 (2) | 0.002 (2) |
C20 | 0.051 (3) | 0.045 (2) | 0.066 (3) | −0.008 (2) | 0.008 (2) | −0.002 (2) |
C21 | 0.039 (2) | 0.056 (3) | 0.075 (3) | −0.003 (2) | 0.003 (2) | −0.021 (3) |
C22 | 0.042 (2) | 0.053 (3) | 0.085 (3) | 0.004 (2) | −0.019 (2) | −0.009 (3) |
C23 | 0.043 (2) | 0.037 (2) | 0.065 (3) | 0.0060 (17) | −0.011 (2) | 0.001 (2) |
Br1—C6 | 1.912 (4) | C11—C12 | 1.495 (5) |
S1—O1 | 1.499 (3) | C11—C18 | 1.505 (5) |
S1—C5 | 1.835 (4) | C11—H11 | 0.9800 |
S1—C2 | 1.847 (4) | C12—C13 | 1.375 (6) |
O2—C7 | 1.191 (4) | C12—C17 | 1.382 (5) |
O3—C10 | 1.199 (4) | C13—C14 | 1.401 (6) |
O4—C10 | 1.338 (4) | C13—H13 | 0.9300 |
O4—C11 | 1.484 (4) | C14—C15 | 1.348 (7) |
N1—C7 | 1.382 (5) | C14—H14 | 0.9300 |
N1—C3 | 1.458 (4) | C15—C16 | 1.364 (6) |
N1—C5 | 1.466 (4) | C15—H15 | 0.9300 |
C2—C9 | 1.506 (6) | C16—C17 | 1.386 (6) |
C2—C8 | 1.540 (6) | C16—H16 | 0.9300 |
C2—C3 | 1.567 (5) | C17—H17 | 0.9300 |
C3—C10 | 1.505 (5) | C18—C19 | 1.372 (5) |
C3—H3 | 0.9800 | C18—C23 | 1.388 (5) |
C5—C6 | 1.537 (5) | C19—C20 | 1.385 (6) |
C5—H5 | 0.9800 | C19—H19 | 0.9300 |
C6—C7 | 1.528 (5) | C20—C21 | 1.371 (6) |
C6—H6 | 0.9800 | C20—H20 | 0.9300 |
C8—H8A | 0.9600 | C21—C22 | 1.374 (6) |
C8—H8B | 0.9600 | C21—H21 | 0.9300 |
C8—H8C | 0.9600 | C22—C23 | 1.371 (5) |
C9—H9A | 0.9600 | C22—H22 | 0.9300 |
C9—H9B | 0.9600 | C23—H23 | 0.9300 |
C9—H9C | 0.9600 | ||
O1—S1—C5 | 103.90 (17) | O3—C10—O4 | 124.8 (3) |
O1—S1—C2 | 105.5 (2) | O3—C10—C3 | 126.0 (3) |
C5—S1—C2 | 88.00 (16) | O4—C10—C3 | 109.1 (3) |
C10—O4—C11 | 116.5 (3) | O4—C11—C12 | 109.9 (3) |
C7—N1—C3 | 123.6 (3) | O4—C11—C18 | 105.5 (3) |
C7—N1—C5 | 93.0 (3) | C12—C11—C18 | 115.4 (3) |
C3—N1—C5 | 117.1 (3) | O4—C11—H11 | 108.6 |
C9—C2—C8 | 113.1 (4) | C12—C11—H11 | 108.6 |
C9—C2—C3 | 112.4 (3) | C18—C11—H11 | 108.6 |
C8—C2—C3 | 111.8 (3) | C13—C12—C17 | 119.2 (4) |
C9—C2—S1 | 107.7 (3) | C13—C12—C11 | 122.9 (4) |
C8—C2—S1 | 108.0 (3) | C17—C12—C11 | 117.9 (4) |
C3—C2—S1 | 103.1 (3) | C12—C13—C14 | 119.7 (4) |
N1—C3—C10 | 112.3 (3) | C12—C13—H13 | 120.1 |
N1—C3—C2 | 105.4 (3) | C14—C13—H13 | 120.1 |
C10—C3—C2 | 112.8 (3) | C15—C14—C13 | 120.0 (4) |
N1—C3—H3 | 108.7 | C15—C14—H14 | 120.0 |
C10—C3—H3 | 108.7 | C13—C14—H14 | 120.0 |
C2—C3—H3 | 108.7 | C14—C15—C16 | 121.3 (4) |
N1—C5—C6 | 88.8 (3) | C14—C15—H15 | 119.4 |
N1—C5—S1 | 103.4 (2) | C16—C15—H15 | 119.4 |
C6—C5—S1 | 113.8 (3) | C15—C16—C17 | 119.3 (4) |
N1—C5—H5 | 115.7 | C15—C16—H16 | 120.4 |
C6—C5—H5 | 115.7 | C17—C16—H16 | 120.4 |
S1—C5—H5 | 115.7 | C12—C17—C16 | 120.6 (4) |
C7—C6—C5 | 84.8 (3) | C12—C17—H17 | 119.7 |
C7—C6—Br1 | 115.9 (3) | C16—C17—H17 | 119.7 |
C5—C6—Br1 | 114.8 (3) | C19—C18—C23 | 118.8 (4) |
C7—C6—H6 | 112.8 | C19—C18—C11 | 121.8 (3) |
C5—C6—H6 | 112.8 | C23—C18—C11 | 119.4 (3) |
Br1—C6—H6 | 112.8 | C18—C19—C20 | 120.4 (4) |
O2—C7—N1 | 130.6 (3) | C18—C19—H19 | 119.8 |
O2—C7—C6 | 136.9 (4) | C20—C19—H19 | 119.8 |
N1—C7—C6 | 92.4 (3) | C21—C20—C19 | 120.2 (4) |
C2—C8—H8A | 109.5 | C21—C20—H20 | 119.9 |
C2—C8—H8B | 109.5 | C19—C20—H20 | 119.9 |
H8A—C8—H8B | 109.5 | C20—C21—C22 | 119.9 (4) |
C2—C8—H8C | 109.5 | C20—C21—H21 | 120.0 |
H8A—C8—H8C | 109.5 | C22—C21—H21 | 120.0 |
H8B—C8—H8C | 109.5 | C23—C22—C21 | 119.8 (4) |
C2—C9—H9A | 109.5 | C23—C22—H22 | 120.1 |
C2—C9—H9B | 109.5 | C21—C22—H22 | 120.1 |
H9A—C9—H9B | 109.5 | C22—C23—C18 | 120.9 (4) |
C2—C9—H9C | 109.5 | C22—C23—H23 | 119.5 |
H9A—C9—H9C | 109.5 | C18—C23—H23 | 119.5 |
H9B—C9—H9C | 109.5 | ||
O1—S1—C2—C9 | −58.9 (3) | C5—C6—C7—N1 | −7.5 (3) |
C5—S1—C2—C9 | −162.8 (3) | Br1—C6—C7—N1 | 107.6 (3) |
O1—S1—C2—C8 | 178.6 (3) | C11—O4—C10—O3 | −1.9 (5) |
C5—S1—C2—C8 | 74.7 (3) | C11—O4—C10—C3 | −179.8 (3) |
O1—S1—C2—C3 | 60.1 (3) | N1—C3—C10—O3 | 20.8 (5) |
C5—S1—C2—C3 | −43.8 (3) | C2—C3—C10—O3 | −98.2 (4) |
C7—N1—C3—C10 | 114.4 (4) | N1—C3—C10—O4 | −161.3 (3) |
C5—N1—C3—C10 | −131.4 (3) | C2—C3—C10—O4 | 79.7 (4) |
C7—N1—C3—C2 | −122.4 (4) | C10—O4—C11—C12 | −82.9 (4) |
C5—N1—C3—C2 | −8.2 (4) | C10—O4—C11—C18 | 152.0 (3) |
C9—C2—C3—N1 | 152.1 (4) | O4—C11—C12—C13 | −23.0 (5) |
C8—C2—C3—N1 | −79.5 (4) | C18—C11—C12—C13 | 96.2 (4) |
S1—C2—C3—N1 | 36.3 (3) | O4—C11—C12—C17 | 159.5 (3) |
C9—C2—C3—C10 | −85.0 (4) | C18—C11—C12—C17 | −81.4 (4) |
C8—C2—C3—C10 | 43.4 (4) | C17—C12—C13—C14 | −0.7 (6) |
S1—C2—C3—C10 | 159.2 (3) | C11—C12—C13—C14 | −178.2 (4) |
C7—N1—C5—C6 | −7.8 (3) | C12—C13—C14—C15 | −0.8 (6) |
C3—N1—C5—C6 | −138.3 (3) | C13—C14—C15—C16 | 1.6 (7) |
C7—N1—C5—S1 | 106.4 (2) | C14—C15—C16—C17 | −0.9 (7) |
C3—N1—C5—S1 | −24.1 (4) | C13—C12—C17—C16 | 1.3 (6) |
O1—S1—C5—N1 | −66.7 (3) | C11—C12—C17—C16 | 179.0 (4) |
C2—S1—C5—N1 | 38.7 (3) | C15—C16—C17—C12 | −0.6 (6) |
O1—S1—C5—C6 | 28.0 (3) | O4—C11—C18—C19 | 76.6 (4) |
C2—S1—C5—C6 | 133.5 (3) | C12—C11—C18—C19 | −45.0 (5) |
N1—C5—C6—C7 | 7.1 (3) | O4—C11—C18—C23 | −104.1 (4) |
S1—C5—C6—C7 | −97.1 (3) | C12—C11—C18—C23 | 134.3 (4) |
N1—C5—C6—Br1 | −109.1 (3) | C23—C18—C19—C20 | 0.2 (6) |
S1—C5—C6—Br1 | 146.69 (19) | C11—C18—C19—C20 | 179.5 (4) |
C3—N1—C7—O2 | −43.8 (6) | C18—C19—C20—C21 | −0.4 (6) |
C5—N1—C7—O2 | −169.4 (5) | C19—C20—C21—C22 | 0.1 (6) |
C3—N1—C7—C6 | 133.5 (3) | C20—C21—C22—C23 | 0.3 (6) |
C5—N1—C7—C6 | 7.9 (3) | C21—C22—C23—C18 | −0.5 (6) |
C5—C6—C7—O2 | 169.5 (5) | C19—C18—C23—C22 | 0.2 (6) |
Br1—C6—C7—O2 | −75.4 (6) | C11—C18—C23—C22 | −179.1 (4) |
Cg is the centroid of the C18–C23 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C21—H21···O2i | 0.93 | 2.54 | 3.465 (5) | 171 |
C22—H22···O1ii | 0.93 | 2.55 | 3.375 (5) | 148 |
C14—H14···Cgiii | 0.93 | 2.68 | 3.533 (5) | 153 |
Symmetry codes: (i) −y+1, x+1, z+1/4; (ii) −x+1, −y+1, z+1/2; (iii) y−1, −x+1, z−1/4. |
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