organic compounds
2-Amino-5,5-dimethylthiazol-4(5H)-one
aGeorgia Southern University, 11935 Abercorn St., Department of Chemistry and Biochemistry, Savannah GA 31419, USA
*Correspondence e-mail: nshank@georgiasouthern.edu
Our work exploring the synthesis and optimization of increasingly hindered 5H8N2OS, a dimethly-substituted 4-thiazolidinone. The molecular packing exhibits a herringbone pattern with the zigzag running along the b-axis direction; the compound crystallizes as chains of hydrogen-bonded dimers formed by N—H⋯N hydrogen bonds, which build centrosymmetric R22(8) ring motifs in the crystal.
led to the synthesis and determination of the title compound, CKeywords: crystal structure; thiazole.
CCDC reference: 1913473
Structure description
As a result of their impressive array of biological responses and potential uses in medicine, 4-thiazolidinones and their derivatives have been extensively investigated in recent years. Their wide range of biological relevance includes anticancer, antiviral, antibacterial (Tripathi et al., 2014), analgesic (Kumar & Patil, 2017) and antipsychotic (Kaur et al., 2010) properties. The synthesis of these five-membered heterocyclic rings is well documented, and the majority of derivatives follow concise synthetic routes and provide generally good yields. However, access to new derivatives is desirable to enable researchers to further explore the utility of these biologically interesting pharmacophores. The title compound provides an avenue for a new substitution pattern that is not often seen in the literature, namely, a geminal dialkyl substitution at the 5-position on the ring. This motif may provide a unique utility since a more thermodynamically favored confirmation may result because of especially if the thiazolidinone is further substituted at the 2- and/or N-positions (Vigorita et al. 1979).
Herein we report the H)-one (Fig. 1). The molecule is nearly planar, with the thiazole ring r.m.s.d. being 0.027 Å. In the crystal, the molecules form hydrogen-bonded dimers. The hydrogen bonding occurs between the N atoms of the thiazole ring and the amino group with an R(8) synthon. The hydrogen bond between N2 and N1ii is characterized by an N2⋯N1 separation of 2.938 (3) Å [symmetry code: (ii) −x + 1, −y + 1, −z; Table 1], with R22(8) ring motifs (Fig. 2). A secondary N2⋯O1 hydrogen bond also involves the amino group and the O1 atom on a neighboring thiazole ring, forming a C(6) motif. This hydrogen bond between N2 and O1i is characterized by an N2⋯O1 separation of 2.820 (3) Å [symmetry code: (i) x + 1, y, z; Table 1]. This C11(6) hydrogen-bonding motif stitches the dimers into a chain running parallel to the a axis, Fig. 2. The exhibits a herringbone pattern with the blocks consisting of the chains of hydrogen-bonded dimers, with the zigzag running along the b-axis direction. There are no other short contacts or π–π interactions observed in the crystal.
of 2-amino-5,5-dimethylthiazol-4(5Synthesis and crystallization
A round-bottom flask was equipped with a stir bar and reflux condenser and then charged with 1.0 g (6.0 mmol, 1.0 equiv.) of 2-bromo-2-methylpropionic acid. The solid was heated to 100°C, at which point 0.57 g (7.5 mmol, 1.25 equiv.) of thiourea was added. The whole was heated to 200°C for 1 h and then allowed to cool to room temperature. The resulting solid was purified on a silica (60 Å, 40–63 mm) column, eluting with methylene chloride while slowly increasing the concentration of methanol (0–25%). Crystals were obtained by slow evaporation of the eluted 1H NMR [300 MHz, (CD3)2SO)] δ = 8.96 (bs, 0.6H, –NH2), 8.72 (bs, 1.4H, –NH2), 1.48 (s, 6H, 2 × –CH3) p.p.m.
Note: the two H atoms on the nitrogen are in non-degenerate equilibrium. NMR:Refinement
Crystal data, data collection and structure .
details are summarized in Table 2Structural data
CCDC reference: 1913473
https://doi.org/10.1107/S2414314619006138/sj4204sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314619006138/sj4204Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314619006138/sj4204Isup3.cdx
Supporting information file. DOI: https://doi.org/10.1107/S2414314619006138/sj4204Isup4.cml
Data collection: CrysAlis PRO (Rigaku OD, 2018); cell
CrysAlis PRO (Rigaku OD, 2018); data reduction: CrysAlis PRO (Rigaku OD, 2018); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).C5H8N2OS | F(000) = 304 |
Mr = 144.19 | Dx = 1.303 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 6.9440 (8) Å | Cell parameters from 1205 reflections |
b = 12.1354 (16) Å | θ = 2.9–26.0° |
c = 8.8283 (11) Å | µ = 0.36 mm−1 |
β = 98.888 (11)° | T = 173 K |
V = 735.01 (16) Å3 | Prism, clear bluish violet |
Z = 4 | 0.2 × 0.2 × 0.05 mm |
Rigaku XtaLAB mini CCD diffractometer | 1681 independent reflections |
Radiation source: fine-focus sealed X-ray tube, Rigaku (Mo) X-ray Source | 1126 reflections with I > 2σ(I) |
Graphite Monochromator monochromator | Rint = 0.055 |
Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 2.9° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2018) | k = −14→15 |
Tmin = 0.497, Tmax = 1.000 | l = −11→10 |
5107 measured reflections |
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.051 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.142 | w = 1/[σ2(Fo2) + (0.0472P)2 + 0.1833P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
1681 reflections | Δρmax = 0.26 e Å−3 |
92 parameters | Δρmin = −0.35 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.65626 (10) | 0.33147 (7) | 0.36674 (8) | 0.0466 (3) | |
N1 | 0.4105 (3) | 0.42897 (19) | 0.1509 (3) | 0.0397 (6) | |
C1 | 0.5978 (4) | 0.4149 (2) | 0.2050 (3) | 0.0359 (6) | |
O1 | 0.1162 (3) | 0.3771 (2) | 0.2117 (3) | 0.0605 (7) | |
N2 | 0.7350 (4) | 0.4625 (2) | 0.1419 (3) | 0.0448 (6) | |
C2 | 0.2946 (4) | 0.3738 (2) | 0.2359 (3) | 0.0406 (7) | |
C3 | 0.3980 (4) | 0.3023 (2) | 0.3668 (3) | 0.0399 (7) | |
C4 | 0.3565 (5) | 0.1815 (2) | 0.3269 (4) | 0.0562 (9) | |
H4A | 0.397060 | 0.164898 | 0.227865 | 0.084* | |
H4B | 0.216548 | 0.167200 | 0.320696 | 0.084* | |
H4C | 0.429051 | 0.134683 | 0.406444 | 0.084* | |
C5 | 0.3337 (5) | 0.3342 (3) | 0.5181 (4) | 0.0555 (9) | |
H5A | 0.399628 | 0.286989 | 0.600194 | 0.083* | |
H5B | 0.192333 | 0.324760 | 0.510091 | 0.083* | |
H5C | 0.367769 | 0.411367 | 0.541405 | 0.083* | |
H2A | 0.868 (5) | 0.453 (3) | 0.170 (4) | 0.063 (10)* | |
H2B | 0.695 (5) | 0.507 (3) | 0.047 (4) | 0.076 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0359 (4) | 0.0617 (5) | 0.0390 (4) | 0.0048 (3) | −0.0043 (3) | 0.0136 (3) |
N1 | 0.0319 (12) | 0.0451 (14) | 0.0409 (13) | 0.0031 (10) | 0.0019 (10) | 0.0083 (11) |
C1 | 0.0335 (14) | 0.0413 (15) | 0.0316 (14) | 0.0046 (12) | 0.0005 (11) | −0.0018 (12) |
O1 | 0.0305 (11) | 0.0752 (16) | 0.0729 (16) | 0.0014 (10) | −0.0013 (11) | 0.0222 (13) |
N2 | 0.0330 (13) | 0.0560 (16) | 0.0448 (15) | 0.0043 (12) | 0.0040 (11) | 0.0109 (12) |
C2 | 0.0324 (14) | 0.0459 (16) | 0.0412 (16) | 0.0017 (13) | −0.0016 (12) | 0.0046 (13) |
C3 | 0.0384 (15) | 0.0439 (16) | 0.0357 (15) | 0.0008 (12) | −0.0002 (12) | 0.0068 (12) |
C4 | 0.069 (2) | 0.0455 (19) | 0.0498 (19) | −0.0033 (16) | −0.0033 (17) | 0.0058 (14) |
C5 | 0.063 (2) | 0.063 (2) | 0.0428 (18) | 0.0042 (17) | 0.0143 (16) | 0.0013 (15) |
S1—C1 | 1.746 (3) | C3—C4 | 1.525 (4) |
S1—C3 | 1.828 (3) | C3—C5 | 1.522 (4) |
N1—C1 | 1.326 (3) | C4—H4A | 0.9800 |
N1—C2 | 1.358 (4) | C4—H4B | 0.9800 |
C1—N2 | 1.310 (4) | C4—H4C | 0.9800 |
O1—C2 | 1.225 (3) | C5—H5A | 0.9800 |
N2—H2A | 0.93 (3) | C5—H5B | 0.9800 |
N2—H2B | 1.00 (4) | C5—H5C | 0.9800 |
C2—C3 | 1.533 (4) | ||
C1—S1—C3 | 90.49 (12) | C5—C3—C2 | 110.5 (2) |
C1—N1—C2 | 111.7 (2) | C5—C3—C4 | 112.1 (3) |
N1—C1—S1 | 117.4 (2) | C3—C4—H4A | 109.5 |
N2—C1—S1 | 120.7 (2) | C3—C4—H4B | 109.5 |
N2—C1—N1 | 121.8 (2) | C3—C4—H4C | 109.5 |
C1—N2—H2A | 126 (2) | H4A—C4—H4B | 109.5 |
C1—N2—H2B | 118 (2) | H4A—C4—H4C | 109.5 |
H2A—N2—H2B | 115 (3) | H4B—C4—H4C | 109.5 |
N1—C2—C3 | 116.6 (2) | C3—C5—H5A | 109.5 |
O1—C2—N1 | 123.9 (3) | C3—C5—H5B | 109.5 |
O1—C2—C3 | 119.5 (3) | C3—C5—H5C | 109.5 |
C2—C3—S1 | 103.59 (19) | H5A—C5—H5B | 109.5 |
C4—C3—S1 | 109.7 (2) | H5A—C5—H5C | 109.5 |
C4—C3—C2 | 108.7 (2) | H5B—C5—H5C | 109.5 |
C5—C3—S1 | 111.8 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1i | 0.93 (3) | 1.93 (4) | 2.820 (3) | 159 (3) |
N2—H2B···N1ii | 1.00 (4) | 1.95 (4) | 2.938 (3) | 170 (3) |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y+1, −z. |
Acknowledgements
The authors thank Georgia Southern University for support of this work.
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