organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoIUCrDATA
ISSN: 2414-3146

Di­ethyl 3,3′-[(4-fluoro­phen­yl)methyl­­idene]bis­­(1H-indole-2-carboxyl­ate)

CROSSMARK_Color_square_no_text.svg

aTargeted MRI Contrast Agents Laboratory of Jiangsu Province, Nanjing Polytechnic Institute, Nanjing 210048, People's Republic of China, and bCollege of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, People's Republic of China
*Correspondence e-mail: njutshs@126.com

Edited by H. Stoeckli-Evans, University of Neuchâtel, Switzerland (Received 3 January 2019; accepted 24 January 2019; online 5 February 2019)

In the title compound, C29H25FN2O4, the mean planes of the indole ring systems (r.m.s. deviations = 0.0107 and 0.0158 Å) are approximately perpendic­ular to each other, subtending a dihedral angle of 87.43 (16)°. The 4-fluoro­phenyl ring is twisted by 77.6 (2) and 83.0 (2)° with respect to the two indole ring systems. In the crystal, mol­ecules are linked by N—H⋯O hydrogen bonds, forming layers parallel to the (001) plane. The layers are linked by C—H⋯π inter­actions, forming a supra­molecular three-dimensional network.

3D view (loading...)
[Scheme 3D1]
Chemical scheme
[Scheme 1]

Structure description

There are abundant bis­(indol­yl)methane derivatives in various terrestrial and marine natural resources (Porter et al., 1977[Porter, J. K., Bacon, C. W., Robbins, J. D., Himmelsbach, D. S. & Higman, H. C. (1977). J. Agric. Food Chem. 25, 88-93.]; Sundberg, 1996[Sundberg, R. J. (1996). The Chemistry of Indoles, p. 113. New York: Academic Press.]). They are important anti­biotics in the field of pharmaceuticals with diverse activities, such as anti­cancer, anti­leishmanial and anti­hyperlipidemic (Chang et al., 1999[Chang, Y.-C., Riby, J., Chang, G. H., Peng, G.-F., Firestone, G. & Bjeldanes, L. F. (1999). Biochem. Pharmacol. 58, 825-834.]; Ge et al., 1999[Ge, X., Fares, F. A. & Yannai, S. (1999). Anticancer Res. 19, 3199-3203.]). On the other hand, they can also be used as precursors for MRI necrosis avid contrast agents (Ni, 2008[Ni, Y.-C. (2008). Curr. Med. Imaging Rev. 4, 96-112.]). In recent years, we have reported the synthesis and crystal structures of some similar bis­(indoly)methane compounds (Sun et al., 2012[Sun, H.-S., Li, Y.-L., Xu, N., Xu, H. & Zhang, J.-D. (2012). Acta Cryst. E68, o2764.], 2015[Sun, H.-S., Li, Y., Jiang, H., Xu, N. & Xu, H. (2015). Acta Cryst. E71, 1140-1142.]; Lu et al., 2014[Lu, X.-H., Sun, H.-S. & Hu, J. (2014). Acta Cryst. E70, 593-595.], 2017[Lu, X.-H., Sun, H.-S., Cai, Y., Chen, L.-L. & Chen, Y.-F. (2017). Acta Cryst. E73, 1790-1792.]), and herein we report on the crystal structure of the title bis­(indoly)methane compound.

The mol­ecular structure of the title compound is shown in Fig. 1[link]. The indole ring systems are nearly perpendicular to each other, making a dihedral angle of 87.43 (16)°. The 4-fluoro­phenyl ring (C2–C7) is twisted with respect to the N1/C8–C15 and N2/C19–C26 indole ring systems, with dihedral angles of 77.6 (2) and 83.0 (2)°, respectively. The carboxyl­ate groups are inclined to the indole ring systems to which they are attached; the O1/O2/C15–C17 mean plane is inclined to the indole ring system N1/C8–C15 by 14.2 (2)°, while the O3/O4/C26–C28 mean plane is inclined to the indole ring system N2/C19–C26 by 8.8 (2)°.

[Figure 1]
Figure 1
The mol­ecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.

In the crystal, mol­ecules are linked by two N—H⋯O hydrogen bonds, N1—H1A⋯O3i and N2—H2A⋯O1ii (see Table 1[link] for details), forming layers parallel to the ab plane (Fig. 2[link]). There are C—H⋯π inter­actions present linking the layers to form a supra­molecular three-dimensional network (Table 2[link] and Fig. 2[link]).

Table 1
Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C20–C25 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯O3i 0.86 (5) 2.19 (5) 2.902 (6) 141 (5)
N2—H2N⋯O1ii 0.90 (4) 2.05 (4) 2.891 (5) 156 (4)
C4—H4⋯Cgiii 0.93 2.95 3.696 (17) 138
Symmetry codes: (i) [x+{\script{1\over 2}}, -y+{\script{1\over 2}}, -z+2]; (ii) x, y+1, z; (iii) [-x+1, y-{\script{1\over 2}}, -z+{\script{3\over 2}}].

Table 2
Experimental details

Crystal data
Chemical formula C29H25FN2O4
Mr 484.51
Crystal system, space group Orthorhombic, P212121
Temperature (K) 293
a, b, c (Å) 9.959 (2), 10.490 (2), 23.620 (5)
V3) 2467.6 (9)
Z 4
Radiation type Mo Kα
μ (mm−1) 0.09
Crystal size (mm) 0.30 × 0.20 × 0.10
 
Data collection
Diffractometer Enraf–Nonius CAD-4
Absorption correction ψ scan (North et al., 1968[North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351-359.])
Tmin, Tmax 0.963, 0.979
No. of measured, independent and observed [I > 2σ(I)] reflections 4526, 4526, 2498
Rint 0.054
(sin θ/λ)max−1) 0.603
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.057, 0.100, 0.95
No. of reflections 4526
No. of parameters 333
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.19, −0.17
Computer programs: CAD-4 EXPRESS (Enraf–Nonius, 1994[Enraf-Nonius (1994). CAD-4 EXPRESS. Enraf-Nonius, Delft, The Netherlands.]), XCAD4 (Harms & Wocadlo, 1995[Harms, K. & Wocadlo, S. (1995). XCAD4. University of Marburg, Germany.]), SHELXS and SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]), SHELXL2018/3 (Sheldrick, 2015[Sheldrick, G. M. (2015). Acta Cryst. C71, 3-8.]), PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]) and publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).
[Figure 2]
Figure 2
A view along the a axis of the crystal packing of the title compound. Hydrogen bonds (red) and C—H⋯π inter­actions (orange) are shown as dashed lines and arrows, respectively (see Table 1[link] for details).

A search of the Cambridge Structural Database (CSD, Version 5.39, last update August 2018; Groom et al., 2016[Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171-179.]) revealed the presence of ten similar compounds (see supporting information). Five are dimethyl carboxyl­ates and five are diethyl carboxyl­ates. In all of these structures the indole ring systems are almost normal to each other.

Synthesis and crystallization

Ethyl indole-2-carboxyl­ate (1.88 g, 10 mmol) was dissolved in 20 ml ethanol, commercially available 4-fluoro­benzaldehyde (0.62 g, 5 mmol) and concentrated HCl (0.5 ml) were added, and the mixture was heated to reflux temperature for 2 h. On completion of the reaction (monitored by TLC; AcOEt:hexane = 1:3) the reaction mixture was cooled to room temperature. The white product obtained was filtered off and washed thoroughly with ethanol (yield 90%). Colourless block-like crystals of the title compound suitable for X-ray diffraction analysis were obtained by slow evaporation of a solution in ethanol.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link].

Structural data


Computing details top

Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell refinement: CAD-4 EXPRESS (Enraf–Nonius, 1994); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS (Sheldrick, 2008); program(s) used to refine structure: SHELXL2018/3 (Sheldrick, 2015); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), PLATON (Spek, 2009) and publCIF (Westrip, 2010).

Diethyl 3,3'-[(4-fluorophenyl)methylidene]bis(1H-indole-2-carboxylate) top
Crystal data top
C29H25FN2O4Dx = 1.304 Mg m3
Mr = 484.51Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 25 reflections
a = 9.959 (2) Åθ = 9–12°
b = 10.490 (2) ŵ = 0.09 mm1
c = 23.620 (5) ÅT = 293 K
V = 2467.6 (9) Å3Block, colourless
Z = 40.30 × 0.20 × 0.10 mm
F(000) = 1016
Data collection top
Enraf–Nonius CAD-4
diffractometer
Rint = 0.054
Radiation source: fine-focus sealed tubeθmax = 25.4°, θmin = 1.7°
ω/2θ scansh = 012
Absorption correction: ψ scan
(North et al., 1968)
k = 012
Tmin = 0.963, Tmax = 0.979l = 2828
4526 measured reflections3 standard reflections every 200 reflections
4526 independent reflections intensity decay: 1%
2498 reflections with I > 2σ(I)
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: mixed
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 0.95 w = 1/[σ2(Fo2) + (0.0214P)2]
where P = (Fo2 + 2Fc2)/3
4526 reflections(Δ/σ)max < 0.001
333 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = 0.17 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. The NH H atoms were located in a difference-Fourier map and freely refined. The C-bound H atom were included in calculated positions and constrained to ride on their parent atoms: C—H = 0.93–0.98 Å with Uiso(H) = 1.5Ueq(C-methyl) and 1.2Ueq(C) for other H atoms.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
F10.5636 (4)0.1711 (4)0.66324 (15)0.0980 (14)
O10.7624 (4)0.0077 (3)0.93583 (16)0.0616 (12)
O20.6161 (4)0.1470 (3)0.91517 (17)0.0651 (12)
N10.9673 (5)0.1679 (5)0.94094 (19)0.0439 (13)
H1N0.987 (5)0.095 (5)0.954 (2)0.049 (18)*
N20.7457 (5)0.7375 (4)0.8897 (2)0.0440 (12)
H2N0.732 (4)0.807 (4)0.9111 (17)0.035 (14)*
C10.7254 (5)0.3859 (4)0.8707 (2)0.0379 (13)
H10.6493190.3724140.8962710.045*
C20.6851 (5)0.3247 (5)0.8145 (2)0.0381 (13)
O30.6074 (4)0.4948 (3)0.97917 (15)0.0553 (11)
C30.5596 (6)0.3537 (6)0.7911 (2)0.0624 (18)
H30.5028620.4097950.8099910.075*
O40.6270 (4)0.7051 (3)0.98935 (17)0.0668 (13)
C40.5187 (7)0.3012 (6)0.7411 (3)0.078 (2)
H40.4346290.3204040.7261810.094*
C50.6028 (7)0.2204 (6)0.7134 (3)0.0608 (17)
C60.7254 (6)0.1904 (6)0.7342 (2)0.0598 (17)
H60.7814670.1355260.7142290.072*
C70.7670 (6)0.2414 (5)0.7849 (2)0.0494 (15)
H70.8506810.2196650.7994670.059*
C80.8450 (5)0.3205 (4)0.8985 (2)0.0348 (13)
C90.9815 (5)0.3630 (4)0.9038 (2)0.0357 (13)
C101.0527 (6)0.4752 (5)0.8890 (2)0.0478 (15)
H101.0095790.5435230.8716430.057*
C111.1868 (6)0.4796 (5)0.9009 (2)0.0574 (17)
H111.2350350.5516000.8902980.069*
C121.2549 (6)0.3806 (6)0.9284 (2)0.0563 (16)
H121.3460860.3887510.9360850.068*
C131.1892 (5)0.2732 (5)0.9437 (2)0.0478 (15)
H13A1.2336110.2070520.9621060.057*
C141.0537 (6)0.2649 (5)0.9312 (2)0.0380 (13)
C150.8417 (5)0.2013 (5)0.9215 (2)0.0396 (14)
C160.7380 (6)0.1042 (5)0.9252 (2)0.0509 (16)
C170.5058 (6)0.0545 (6)0.9165 (3)0.083 (2)
H17A0.5373650.0263220.9314060.100*
H17B0.4341330.0852820.9407740.100*
C180.4579 (9)0.0384 (8)0.8605 (3)0.131 (3)
H18A0.3854310.0219280.8603570.197*
H18B0.4264830.1187710.8461830.197*
H18C0.5293200.0075940.8368520.197*
C190.7419 (5)0.5290 (4)0.8659 (2)0.0348 (12)
C200.7909 (5)0.6024 (5)0.8180 (2)0.0389 (13)
C210.8318 (5)0.5744 (5)0.7625 (2)0.0537 (16)
H210.8314290.4908060.7494100.064*
C220.8716 (6)0.6706 (6)0.7285 (2)0.0622 (18)
H220.8978970.6525060.6916060.075*
C230.8740 (6)0.7945 (6)0.7471 (3)0.068 (2)
H23A0.9029650.8574190.7222410.082*
C240.8358 (5)0.8300 (5)0.8008 (2)0.0541 (17)
H240.8389310.9142510.8130370.065*
C250.7920 (6)0.7313 (5)0.8355 (2)0.0460 (15)
C260.7135 (5)0.6151 (4)0.9070 (2)0.0374 (13)
C270.6450 (5)0.5951 (5)0.9619 (2)0.0435 (14)
C280.5525 (7)0.7020 (6)1.0417 (3)0.077 (2)
H28A0.4758810.6457961.0373840.092*
H28B0.5188570.7867991.0499150.092*
C290.6336 (8)0.6584 (6)1.0891 (3)0.104 (3)
H29A0.5800370.6578791.1229010.157*
H29B0.6656370.5737691.0815840.157*
H29C0.7086040.7147441.0941130.157*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
F10.092 (3)0.127 (3)0.076 (3)0.010 (3)0.026 (2)0.042 (3)
O10.064 (3)0.0255 (19)0.096 (3)0.004 (2)0.011 (2)0.011 (2)
O20.047 (2)0.043 (2)0.105 (4)0.002 (2)0.006 (3)0.011 (2)
N10.053 (3)0.032 (3)0.046 (3)0.002 (3)0.002 (2)0.001 (2)
N20.046 (3)0.031 (3)0.055 (3)0.002 (3)0.008 (3)0.001 (3)
C10.037 (3)0.029 (3)0.048 (3)0.003 (3)0.000 (3)0.002 (3)
C20.031 (3)0.037 (3)0.046 (3)0.001 (3)0.002 (3)0.001 (3)
O30.078 (3)0.034 (2)0.055 (3)0.011 (2)0.019 (2)0.0016 (19)
C30.054 (4)0.071 (4)0.062 (4)0.014 (4)0.017 (4)0.016 (4)
O40.100 (3)0.037 (2)0.064 (3)0.010 (2)0.034 (3)0.015 (2)
C40.060 (5)0.099 (6)0.076 (5)0.002 (5)0.034 (4)0.013 (4)
C50.061 (4)0.071 (4)0.050 (4)0.007 (4)0.004 (4)0.020 (3)
C60.061 (4)0.071 (4)0.047 (4)0.012 (4)0.002 (3)0.012 (3)
C70.043 (4)0.054 (3)0.051 (4)0.011 (3)0.004 (3)0.012 (3)
C80.043 (3)0.026 (3)0.035 (3)0.002 (3)0.003 (3)0.001 (2)
C90.041 (3)0.034 (3)0.032 (3)0.001 (3)0.004 (3)0.001 (2)
C100.051 (4)0.043 (3)0.049 (4)0.013 (3)0.006 (3)0.011 (3)
C110.060 (4)0.055 (4)0.057 (4)0.021 (3)0.010 (3)0.004 (3)
C120.045 (4)0.067 (4)0.057 (4)0.001 (4)0.013 (3)0.005 (3)
C130.037 (4)0.049 (4)0.058 (4)0.003 (3)0.002 (3)0.004 (3)
C140.047 (3)0.034 (3)0.033 (3)0.007 (3)0.001 (3)0.002 (2)
C150.047 (4)0.036 (3)0.036 (3)0.006 (3)0.001 (3)0.001 (3)
C160.058 (4)0.036 (3)0.059 (4)0.004 (4)0.009 (3)0.004 (3)
C170.069 (5)0.066 (5)0.114 (7)0.008 (4)0.002 (5)0.007 (5)
C180.147 (9)0.150 (8)0.097 (7)0.053 (7)0.005 (6)0.019 (6)
C190.029 (3)0.036 (3)0.040 (3)0.001 (3)0.001 (3)0.000 (3)
C200.037 (3)0.038 (3)0.042 (3)0.004 (3)0.003 (3)0.012 (3)
C210.060 (4)0.052 (3)0.049 (4)0.006 (3)0.011 (3)0.004 (3)
C220.068 (5)0.071 (4)0.047 (4)0.006 (4)0.014 (3)0.013 (4)
C230.051 (4)0.085 (5)0.069 (5)0.015 (4)0.000 (4)0.047 (4)
C240.050 (4)0.047 (3)0.065 (4)0.002 (3)0.003 (3)0.031 (3)
C250.042 (4)0.041 (3)0.055 (4)0.001 (3)0.002 (3)0.012 (3)
C260.036 (3)0.027 (3)0.049 (4)0.004 (3)0.003 (3)0.008 (3)
C270.040 (4)0.033 (3)0.058 (4)0.002 (3)0.000 (3)0.003 (3)
C280.094 (6)0.061 (4)0.077 (5)0.001 (4)0.039 (5)0.017 (4)
C290.170 (8)0.076 (5)0.068 (5)0.010 (6)0.000 (5)0.018 (4)
Geometric parameters (Å, º) top
F1—C51.350 (6)C11—C121.400 (7)
O1—C161.225 (5)C11—H110.9300
O2—C161.316 (6)C12—C131.353 (7)
O2—C171.466 (7)C12—H120.9300
N1—C141.351 (7)C13—C141.384 (7)
N1—C151.379 (6)C13—H13A0.9300
N1—H1N0.86 (5)C15—C161.453 (7)
N2—C251.362 (6)C17—C181.418 (8)
N2—C261.384 (5)C17—H17A0.9700
N2—H2N0.90 (4)C17—H17B0.9700
C1—C191.514 (6)C18—H18A0.9600
C1—C81.524 (6)C18—H18B0.9600
C1—C21.528 (6)C18—H18C0.9600
C1—H10.9800C19—C261.356 (6)
C2—C71.385 (6)C19—C201.453 (6)
C2—C31.400 (7)C20—C211.404 (7)
O3—C271.190 (5)C20—C251.414 (6)
C3—C41.365 (7)C21—C221.350 (7)
C3—H30.9300C21—H210.9300
O4—C271.336 (5)C22—C231.372 (8)
O4—C281.443 (6)C22—H220.9300
C4—C51.359 (8)C23—C241.376 (8)
C4—H40.9300C23—H23A0.9300
C5—C61.354 (7)C24—C251.391 (7)
C6—C71.376 (7)C24—H240.9300
C6—H60.9300C26—C271.479 (7)
C7—H70.9300C28—C291.453 (8)
C8—C151.363 (6)C28—H28A0.9700
C8—C91.437 (6)C28—H28B0.9700
C9—C141.413 (6)C29—H29A0.9600
C9—C101.419 (6)C29—H29B0.9600
C10—C111.365 (6)C29—H29C0.9600
C10—H100.9300
C16—O2—C17117.5 (4)N1—C15—C16116.5 (5)
C14—N1—C15109.3 (5)O1—C16—O2123.1 (5)
C14—N1—H1N126 (4)O1—C16—C15122.9 (6)
C15—N1—H1N124 (4)O2—C16—C15113.9 (5)
C25—N2—C26108.2 (4)C18—C17—O2108.1 (6)
C25—N2—H2N128 (3)C18—C17—H17A110.1
C26—N2—H2N124 (3)O2—C17—H17A110.1
C19—C1—C8113.2 (4)C18—C17—H17B110.1
C19—C1—C2112.4 (4)O2—C17—H17B110.1
C8—C1—C2113.0 (4)H17A—C17—H17B108.4
C19—C1—H1105.8C17—C18—H18A109.5
C8—C1—H1105.8C17—C18—H18B109.5
C2—C1—H1105.8H18A—C18—H18B109.5
C7—C2—C3117.6 (5)C17—C18—H18C109.5
C7—C2—C1123.3 (5)H18A—C18—H18C109.5
C3—C2—C1119.1 (5)H18B—C18—H18C109.5
C4—C3—C2121.3 (6)C26—C19—C20105.9 (4)
C4—C3—H3119.3C26—C19—C1125.8 (5)
C2—C3—H3119.3C20—C19—C1128.3 (5)
C27—O4—C28117.8 (4)C21—C20—C25118.1 (5)
C5—C4—C3118.9 (6)C21—C20—C19135.5 (5)
C5—C4—H4120.5C25—C20—C19106.4 (5)
C3—C4—H4120.5C22—C21—C20119.0 (5)
F1—C5—C6119.3 (6)C22—C21—H21120.5
F1—C5—C4118.9 (6)C20—C21—H21120.5
C6—C5—C4121.8 (6)C21—C22—C23121.5 (6)
C5—C6—C7119.8 (6)C21—C22—H22119.2
C5—C6—H6120.1C23—C22—H22119.2
C7—C6—H6120.1C22—C23—C24123.2 (6)
C6—C7—C2120.5 (5)C22—C23—H23A118.4
C6—C7—H7119.8C24—C23—H23A118.4
C2—C7—H7119.8C23—C24—C25115.4 (6)
C15—C8—C9105.8 (4)C23—C24—H24122.3
C15—C8—C1124.5 (5)C25—C24—H24122.3
C9—C8—C1129.6 (4)N2—C25—C24128.7 (5)
C14—C9—C10117.6 (5)N2—C25—C20108.5 (5)
C14—C9—C8107.2 (4)C24—C25—C20122.8 (5)
C10—C9—C8135.2 (5)C19—C26—N2111.0 (4)
C11—C10—C9117.7 (5)C19—C26—C27128.9 (5)
C11—C10—H10121.1N2—C26—C27119.8 (5)
C9—C10—H10121.1O3—C27—O4123.7 (5)
C10—C11—C12123.1 (6)O3—C27—C26124.9 (5)
C10—C11—H11118.5O4—C27—C26111.4 (5)
C12—C11—H11118.5O4—C28—C29112.4 (6)
C13—C12—C11120.5 (5)O4—C28—H28A109.1
C13—C12—H12119.7C29—C28—H28A109.1
C11—C12—H12119.7O4—C28—H28B109.1
C12—C13—C14117.8 (6)C29—C28—H28B109.1
C12—C13—H13A121.1H28A—C28—H28B107.8
C14—C13—H13A121.1C28—C29—H29A109.5
N1—C14—C13129.2 (5)C28—C29—H29B109.5
N1—C14—C9107.6 (5)H29A—C29—H29B109.5
C13—C14—C9123.2 (5)C28—C29—H29C109.5
C8—C15—N1110.1 (5)H29A—C29—H29C109.5
C8—C15—C16133.2 (5)H29B—C29—H29C109.5
C19—C1—C2—C7114.2 (5)C17—O2—C16—O10.6 (9)
C8—C1—C2—C715.5 (7)C17—O2—C16—C15178.4 (5)
C19—C1—C2—C365.7 (6)C8—C15—C16—O1162.6 (6)
C8—C1—C2—C3164.7 (5)N1—C15—C16—O111.9 (8)
C7—C2—C3—C40.4 (9)C8—C15—C16—O216.5 (9)
C1—C2—C3—C4179.8 (6)N1—C15—C16—O2169.1 (5)
C2—C3—C4—C50.7 (10)C16—O2—C17—C18110.4 (7)
C3—C4—C5—F1178.3 (6)C8—C1—C19—C2684.1 (6)
C3—C4—C5—C60.2 (11)C2—C1—C19—C26146.4 (5)
F1—C5—C6—C7179.2 (5)C8—C1—C19—C2095.4 (6)
C4—C5—C6—C70.6 (10)C2—C1—C19—C2034.1 (8)
C5—C6—C7—C21.0 (9)C26—C19—C20—C21177.0 (6)
C3—C2—C7—C60.5 (8)C1—C19—C20—C213.5 (10)
C1—C2—C7—C6179.3 (5)C26—C19—C20—C251.8 (6)
C19—C1—C8—C15161.4 (5)C1—C19—C20—C25177.8 (5)
C2—C1—C8—C1569.4 (6)C25—C20—C21—C220.7 (9)
C19—C1—C8—C922.3 (7)C19—C20—C21—C22179.4 (6)
C2—C1—C8—C9106.9 (5)C20—C21—C22—C230.6 (10)
C15—C8—C9—C140.9 (5)C21—C22—C23—C240.6 (10)
C1—C8—C9—C14177.7 (5)C22—C23—C24—C250.8 (9)
C15—C8—C9—C10179.9 (5)C26—N2—C25—C24179.9 (6)
C1—C8—C9—C103.1 (9)C26—N2—C25—C200.7 (6)
C14—C9—C10—C111.5 (7)C23—C24—C25—N2178.5 (5)
C8—C9—C10—C11179.4 (5)C23—C24—C25—C202.2 (8)
C9—C10—C11—C121.9 (8)C21—C20—C25—N2178.3 (5)
C10—C11—C12—C131.1 (9)C19—C20—C25—N20.7 (6)
C11—C12—C13—C140.2 (8)C21—C20—C25—C242.2 (9)
C15—N1—C14—C13180.0 (5)C19—C20—C25—C24178.8 (5)
C15—N1—C14—C90.9 (6)C20—C19—C26—N22.3 (6)
C12—C13—C14—N1178.5 (5)C1—C19—C26—N2177.3 (5)
C12—C13—C14—C90.5 (8)C20—C19—C26—C27171.5 (5)
C10—C9—C14—N1179.5 (4)C1—C19—C26—C278.9 (9)
C8—C9—C14—N11.1 (6)C25—N2—C26—C191.9 (6)
C10—C9—C14—C130.3 (7)C25—N2—C26—C27172.5 (5)
C8—C9—C14—C13179.7 (5)C28—O4—C27—O32.8 (9)
C9—C8—C15—N10.4 (6)C28—O4—C27—C26175.6 (5)
C1—C8—C15—N1177.4 (4)C19—C26—C27—O32.8 (9)
C9—C8—C15—C16174.3 (5)N2—C26—C27—O3176.1 (5)
C1—C8—C15—C162.6 (9)C19—C26—C27—O4175.6 (5)
C14—N1—C15—C80.3 (6)N2—C26—C27—O42.2 (7)
C14—N1—C15—C16176.0 (4)C27—O4—C28—C2979.4 (7)
Hydrogen-bond geometry (Å, º) top
Cg is the centroid of the C20–C25 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1N···O3i0.86 (5)2.19 (5)2.902 (6)141 (5)
N2—H2N···O1ii0.90 (4)2.05 (4)2.891 (5)156 (4)
C4—H4···Cgiii0.932.953.696 (17)138
Symmetry codes: (i) x+1/2, y+1/2, z+2; (ii) x, y+1, z; (iii) x+1, y1/2, z+3/2.
 

Acknowledgements

The authors thank the Center of Testing and Analysis, Nanjing University, for support.

Funding information

Funding for this research was provided by: Natural Science Foundation of Jiangsu Province (grant No. BK20181486); Natural Science Foundation of the Jiangsu Higher Education Institutions (grant No. 17KJB320001); Training program of Students innovation and entrepreneurship in Jiangsu Province (grant No. 201812920002Y); Principals of Jiangsu Province and Qing Lan Project of Jiangsu Province.

References

First citationChang, Y.-C., Riby, J., Chang, G. H., Peng, G.-F., Firestone, G. & Bjeldanes, L. F. (1999). Biochem. Pharmacol. 58, 825–834.  Web of Science CrossRef PubMed CAS Google Scholar
First citationEnraf–Nonius (1994). CAD-4 EXPRESS. Enraf-Nonius, Delft, The Netherlands.  Google Scholar
First citationGe, X., Fares, F. A. & Yannai, S. (1999). Anticancer Res. 19, 3199–3203.  Web of Science PubMed CAS Google Scholar
First citationGroom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179.  Web of Science CrossRef IUCr Journals Google Scholar
First citationHarms, K. & Wocadlo, S. (1995). XCAD4. University of Marburg, Germany.  Google Scholar
First citationLu, X.-H., Sun, H.-S., Cai, Y., Chen, L.-L. & Chen, Y.-F. (2017). Acta Cryst. E73, 1790–1792.  CrossRef IUCr Journals Google Scholar
First citationLu, X.-H., Sun, H.-S. & Hu, J. (2014). Acta Cryst. E70, 593–595.  CrossRef IUCr Journals Google Scholar
First citationNi, Y.-C. (2008). Curr. Med. Imaging Rev. 4, 96–112.  Web of Science CrossRef CAS Google Scholar
First citationNorth, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.  CrossRef IUCr Journals Web of Science Google Scholar
First citationPorter, J. K., Bacon, C. W., Robbins, J. D., Himmelsbach, D. S. & Higman, H. C. (1977). J. Agric. Food Chem. 25, 88–93.  CrossRef CAS Web of Science Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSheldrick, G. M. (2015). Acta Cryst. C71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
First citationSpek, A. L. (2009). Acta Cryst. D65, 148–155.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSun, H.-S., Li, Y., Jiang, H., Xu, N. & Xu, H. (2015). Acta Cryst. E71, 1140–1142.  Web of Science CrossRef IUCr Journals Google Scholar
First citationSun, H.-S., Li, Y.-L., Xu, N., Xu, H. & Zhang, J.-D. (2012). Acta Cryst. E68, o2764.  CrossRef IUCr Journals Google Scholar
First citationSundberg, R. J. (1996). The Chemistry of Indoles, p. 113. New York: Academic Press.  Google Scholar
First citationWestrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.  Web of Science CrossRef CAS IUCr Journals Google Scholar

This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.

Journal logoIUCrDATA
ISSN: 2414-3146
Follow IUCr Journals
Sign up for e-alerts
Follow IUCr on Twitter
Follow us on facebook
Sign up for RSS feeds