metal-organic compounds
Bis[S-octyl 3-(4-methoxybenzylidene)dithiocarbazato-κ2N3,S]nickel(II)
aDepartment of Physics, Shahjalal University of Science and Technology, Sylhet-3114, Bangladesh, bDepartment of Chemical and Pharmaceutical Sciences, via Giorgieri 1, 34127, Trieste, Italy, cDepartment of Chemistry, Shahjalal University of Science and Technology, Sylhet-3114, Bangladesh, dDepartment of Applied Chemistry, Faculty of Engineering, University of Toyama, 3190 Gofuku, Toyama, 930-8555, Japan, and eCenter for Environmental Conservation and Research Safety, University of Toyama, 3190 Gofuku, Toyama, 930-8555, Japan
*Correspondence e-mail: china@sust.edu
The nickel(II) cation of the title complex, [Ni(C17H25N2OS2)2], is located on a crystallographic inversion centre. It has a square-planar coordination geometry, with a trans configuration of the N,S-chelating ligands, as imposed by the crystal symmetry.
CCDC reference: 1057810
Structure description
Bidentate S-methyl or S-benzyl dithiocarbazates and their metal complexes have received considerable attention for their possible bioactivities. As part of our ongoing structural studies of S-containing (Howlader et al., 2015; Islam et al., 2011, 2014), we now report on the structure of the title complex in which the ligand has a long alkyl chain.
ofThe molecular structure of the title complex is illustrated in Fig. 1. The complex has the nickel(II) cation located on a crystallographic inversion centre with the two in their deprotonated imino thiolate form, chelating through the azomethine nitrogen atom N1 and the thiolate sulfur atom S1 in a trans-planar configuration, as imposed by the crystal symmetry. The complex has a coplanar geometry with the exception of the octyl chains that extend above and below the coordination plane (Fig. 1). The Ni—S and Ni—N bond lengths are 2.1796 (6) and 1.9310 (19) Å, respectively, and the S1—Ni1—N1 chelating angle is 85.67 (5)°. These geometrical parameters are comparable to those found in the related bis-chelated nickel(II) complex with the S-hexyl 3-(4-methylbenzylidene)dithiocarbazate ligand (Howlader et al., 2015). There the corresponding bond lengths and angles are 2.1775 (10) and 1.933 (3) Å, and 86.04 (9)°, respectively, indicating that neither the longer alkyl group nor the different Schiff base affects the coordination bond lengths.
The structure of the title ligand (HL), reported by Begum et al. (2015), shows that on coordination, a 180° rotation occurs about the C9—N2 bond in order to allow N,S to the metal atom. Upon coordination, some salient features are also observed with respect to the free ligand. The most significant is an elongation of the C9—S1 bond length from 1.6734 (15) Å in the ligand to 1.7514 (19) Å in the title complex, thus validating the coordination with the deprotonated thiolate sulfur atom. Correspondingly, the N2—C9 bond length of 1.3343 (16) Å in HL is shortened to 1.285 (3) Å in the title complex, while the N1—N2 bond length of 1.3829 (17) Å in HL is slightly elongated to 1.413 (3) Å in the complex. These geometrical parameters agree with those reported for similar nickel complexes when the ligands assume either a trans (Islam et al., 2011, 2014; Zhang et al., 2004) or a cis configuration (Chan et al., 2008; Li et al., 2006).
In the crystal, complex molecules stack up the a axis at a distance of 4.55302 (14) Å, thus excluding any significant interactions between the aromatic rings (see Fig. 2).
Synthesis and crystallization
A solution of Ni(CH3COO)2·4H2O (0.06 g, 0.25 mmol) in methanol (7 ml) was added to a methanol solution (10 ml) of the S-octyl (E)-3-(4-methoxybenzylidene)dithiocarbazate ligand (0.17 g, 0.5 mmol). The resulting mixture was stirred at room temperature for 5 h. The dark orange precipitate that formed was filtered off, washed with methanol and dried in vacuo over anhydrous CaCl2. Dark orange single crystals of the title complex (m.p. 371 K), suitable for X-ray were obtained by slow evaporation from a mixture of chloroform/toluene (6:1 v:v).
Refinement
Crystal data, data collection and structure .
details are summarized in Table 1Structural data
CCDC reference: 1057810
https://doi.org/10.1107/S241431461801684X/su4168sup1.cif
contains datablocks General, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S241431461801684X/su4168Isup2.hkl
Data collection: RAPID-AUTO (Rigaku, 1999); cell
RAPID-AUTO (Rigaku, 1999); data reduction: RAPID-AUTO (Rigaku, 1999); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).[Ni(C17H25N2OS2)2] | Z = 1 |
Mr = 733.73 | F(000) = 390.00 |
Triclinic, P1 | Dx = 1.369 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71075 Å |
a = 4.55302 (14) Å | Cell parameters from 8264 reflections |
b = 11.5641 (3) Å | θ = 3.1–27.5° |
c = 17.5075 (5) Å | µ = 0.82 mm−1 |
α = 84.1436 (7)° | T = 173 K |
β = 85.6165 (10)° | Platelet, orange |
γ = 76.4084 (10)° | 0.27 × 0.12 × 0.07 mm |
V = 890.00 (5) Å3 |
Rigaku R-AXIS RAPID diffractometer | 3705 reflections with F2 > 2.0σ(F2) |
Detector resolution: 10.000 pixels mm-1 | Rint = 0.025 |
ω scans | θmax = 27.5° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −5→5 |
Tmin = 0.866, Tmax = 0.944 | k = −14→14 |
8899 measured reflections | l = −22→21 |
4041 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.15 | w = 1/[σ2(Fo2) + (0.0566P)2 + 0.5813P] where P = (Fo2 + 2Fc2)/3 |
4041 reflections | (Δ/σ)max = 0.001 |
207 parameters | Δρmax = 1.17 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
Primary atom site location: structure-invariant direct methods |
Geometry. ENTER SPECIAL DETAILS OF THE MOLECULAR GEOMETRY |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 sigma(F2) is used only for calculating R-factor (gt). The H atoms were located geometrically and treated as riding atoms: C—H = 0.95–0.99 Å with Uiso(H) = 1.5Ueq(C-methyl) and 1.2Ueq(C) for other H atoms. |
x | y | z | Uiso*/Ueq | ||
Ni | 0.5000 | 0.5000 | 0.5000 | 0.02291 (12) | |
S1 | 0.53959 (14) | 0.35043 (5) | 0.58802 (3) | 0.03236 (15) | |
S2 | 0.72806 (13) | 0.33241 (4) | 0.74527 (3) | 0.02987 (14) | |
O1 | 1.3002 (4) | 0.96865 (14) | 0.71096 (9) | 0.0387 (4) | |
N1 | 0.6922 (4) | 0.57294 (15) | 0.57058 (9) | 0.0247 (4) | |
N2 | 0.7284 (4) | 0.52311 (15) | 0.64734 (9) | 0.0256 (4) | |
C1 | 0.9372 (5) | 0.73725 (17) | 0.59923 (11) | 0.0249 (4) | |
C2 | 1.0441 (5) | 0.82953 (18) | 0.55700 (12) | 0.0292 (5) | |
C3 | 1.1693 (5) | 0.90850 (18) | 0.59111 (12) | 0.0302 (5) | |
C4 | 1.1880 (5) | 0.89570 (18) | 0.67074 (12) | 0.0283 (4) | |
C5 | 1.0869 (6) | 0.8034 (2) | 0.71388 (13) | 0.0353 (5) | |
C6 | 0.9640 (6) | 0.72470 (19) | 0.67942 (12) | 0.0314 (5) | |
C7 | 1.3781 (6) | 1.0717 (2) | 0.66998 (15) | 0.0397 (6) | |
C8 | 0.8008 (5) | 0.66685 (18) | 0.55359 (11) | 0.0264 (4) | |
C9 | 0.6696 (5) | 0.41906 (17) | 0.65734 (11) | 0.0243 (4) | |
C10 | 0.8698 (5) | 0.42720 (18) | 0.80277 (11) | 0.0282 (4) | |
C11 | 0.6211 (5) | 0.51742 (19) | 0.84182 (12) | 0.0291 (4) | |
C12 | 0.7464 (5) | 0.58919 (19) | 0.89491 (12) | 0.0293 (5) | |
C13 | 0.5011 (5) | 0.6716 (2) | 0.94072 (12) | 0.0314 (5) | |
C14 | 0.6261 (5) | 0.73863 (19) | 0.99649 (12) | 0.0306 (5) | |
C15 | 0.3830 (5) | 0.82086 (19) | 1.04283 (12) | 0.0305 (5) | |
C16 | 0.5078 (6) | 0.8927 (2) | 1.09547 (13) | 0.0335 (5) | |
C17 | 0.2620 (6) | 0.9785 (2) | 1.13894 (14) | 0.0418 (6) | |
H1 | 1.0306 | 0.8386 | 0.5028 | 0.0351* | |
H2 | 1.2411 | 0.9701 | 0.5608 | 0.0362* | |
H3 | 1.1027 | 0.7943 | 0.7681 | 0.0423* | |
H4 | 0.8974 | 0.6620 | 0.7099 | 0.0377* | |
H5 | 1.5416 | 1.0465 | 0.6312 | 0.0476* | |
H6 | 1.4452 | 1.1184 | 0.7060 | 0.0476* | |
H7 | 1.2007 | 1.1208 | 0.6446 | 0.0476* | |
H8 | 0.7894 | 0.6958 | 0.5009 | 0.0316* | |
H9 | 0.9957 | 0.3763 | 0.8426 | 0.0338* | |
H10 | 1.0013 | 0.4706 | 0.7693 | 0.0338* | |
H11 | 0.4799 | 0.4749 | 0.8721 | 0.0349* | |
H12 | 0.5055 | 0.5730 | 0.8021 | 0.0349* | |
H13 | 0.8793 | 0.5331 | 0.9312 | 0.0352* | |
H14 | 0.8718 | 0.6376 | 0.8636 | 0.0352* | |
H15 | 0.3694 | 0.6238 | 0.9700 | 0.0377* | |
H16 | 0.3744 | 0.7304 | 0.9045 | 0.0377* | |
H17 | 0.7537 | 0.6798 | 1.0325 | 0.0367* | |
H18 | 0.7571 | 0.7866 | 0.9671 | 0.0367* | |
H19 | 0.2587 | 0.7722 | 1.0744 | 0.0366* | |
H20 | 0.2485 | 0.8769 | 1.0069 | 0.0366* | |
H21 | 0.6347 | 0.8368 | 1.1330 | 0.0402* | |
H22 | 0.6391 | 0.9388 | 1.0643 | 0.0402* | |
H23 | 0.1296 | 1.0319 | 1.1022 | 0.0501* | |
H24 | 0.3557 | 1.0259 | 1.1689 | 0.0501* | |
H25 | 0.1426 | 0.9331 | 1.1737 | 0.0501* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni | 0.0282 (2) | 0.02338 (19) | 0.02004 (18) | −0.01005 (13) | −0.00419 (13) | −0.00357 (13) |
S1 | 0.0511 (4) | 0.0275 (3) | 0.0245 (3) | −0.0186 (3) | −0.0109 (2) | −0.00139 (19) |
S2 | 0.0432 (3) | 0.0257 (3) | 0.0235 (3) | −0.0124 (2) | −0.0073 (2) | −0.00067 (18) |
O1 | 0.0545 (11) | 0.0323 (8) | 0.0371 (9) | −0.0207 (7) | −0.0132 (8) | −0.0064 (7) |
N1 | 0.0302 (9) | 0.0249 (8) | 0.0207 (8) | −0.0086 (7) | −0.0036 (7) | −0.0027 (6) |
N2 | 0.0322 (9) | 0.0259 (8) | 0.0206 (8) | −0.0089 (7) | −0.0047 (7) | −0.0030 (6) |
C1 | 0.0266 (10) | 0.0241 (9) | 0.0258 (10) | −0.0070 (7) | −0.0046 (7) | −0.0053 (7) |
C2 | 0.0362 (11) | 0.0285 (10) | 0.0250 (10) | −0.0103 (8) | −0.0045 (8) | −0.0035 (8) |
C3 | 0.0355 (11) | 0.0258 (10) | 0.0318 (11) | −0.0118 (8) | −0.0018 (9) | −0.0034 (8) |
C4 | 0.0287 (10) | 0.0251 (9) | 0.0335 (11) | −0.0070 (8) | −0.0077 (8) | −0.0075 (8) |
C5 | 0.0517 (14) | 0.0316 (11) | 0.0266 (10) | −0.0142 (10) | −0.0113 (10) | −0.0037 (8) |
C6 | 0.0444 (13) | 0.0281 (10) | 0.0256 (10) | −0.0148 (9) | −0.0067 (9) | −0.0015 (8) |
C7 | 0.0493 (14) | 0.0314 (11) | 0.0456 (14) | −0.0196 (10) | −0.0076 (11) | −0.0095 (10) |
C8 | 0.0305 (10) | 0.0280 (10) | 0.0227 (9) | −0.0097 (8) | −0.0047 (8) | −0.0032 (7) |
C9 | 0.0258 (10) | 0.0268 (10) | 0.0211 (9) | −0.0056 (7) | −0.0027 (7) | −0.0050 (7) |
C10 | 0.0336 (11) | 0.0297 (10) | 0.0235 (10) | −0.0096 (8) | −0.0085 (8) | −0.0024 (8) |
C11 | 0.0310 (11) | 0.0335 (11) | 0.0261 (10) | −0.0119 (8) | −0.0043 (8) | −0.0060 (8) |
C12 | 0.0304 (11) | 0.0364 (11) | 0.0251 (10) | −0.0133 (9) | −0.0042 (8) | −0.0059 (8) |
C13 | 0.0309 (11) | 0.0374 (11) | 0.0291 (10) | −0.0108 (9) | −0.0048 (8) | −0.0083 (9) |
C14 | 0.0330 (11) | 0.0353 (11) | 0.0272 (10) | −0.0130 (9) | −0.0047 (8) | −0.0057 (8) |
C15 | 0.0350 (11) | 0.0316 (10) | 0.0277 (10) | −0.0118 (9) | −0.0050 (8) | −0.0041 (8) |
C16 | 0.0396 (12) | 0.0345 (11) | 0.0300 (11) | −0.0125 (9) | −0.0078 (9) | −0.0057 (9) |
C17 | 0.0534 (15) | 0.0356 (12) | 0.0375 (13) | −0.0065 (11) | −0.0114 (11) | −0.0104 (10) |
Ni—S1 | 2.1796 (6) | C2—H1 | 0.950 |
Ni—S1i | 2.1796 (6) | C3—H2 | 0.950 |
Ni—N1 | 1.9310 (19) | C5—H3 | 0.950 |
Ni—N1i | 1.9310 (19) | C6—H4 | 0.950 |
S1—C9 | 1.726 (3) | C7—H5 | 0.980 |
S2—C9 | 1.7514 (19) | C7—H6 | 0.980 |
S2—C10 | 1.813 (3) | C7—H7 | 0.980 |
O1—C4 | 1.359 (3) | C8—H8 | 0.950 |
O1—C7 | 1.430 (3) | C10—H9 | 0.990 |
N1—N2 | 1.413 (3) | C10—H10 | 0.990 |
N1—C8 | 1.295 (3) | C11—H11 | 0.990 |
N2—C9 | 1.285 (3) | C11—H12 | 0.990 |
C1—C2 | 1.397 (3) | C12—H13 | 0.990 |
C1—C6 | 1.408 (3) | C12—H14 | 0.990 |
C1—C8 | 1.461 (4) | C13—H15 | 0.990 |
C2—C3 | 1.387 (4) | C13—H16 | 0.990 |
C3—C4 | 1.394 (3) | C14—H17 | 0.990 |
C4—C5 | 1.391 (4) | C14—H18 | 0.990 |
C5—C6 | 1.381 (4) | C15—H19 | 0.990 |
C10—C11 | 1.520 (3) | C15—H20 | 0.990 |
C11—C12 | 1.530 (4) | C16—H21 | 0.990 |
C12—C13 | 1.523 (3) | C16—H22 | 0.990 |
C13—C14 | 1.524 (4) | C17—H23 | 0.980 |
C14—C15 | 1.521 (3) | C17—H24 | 0.980 |
C15—C16 | 1.523 (4) | C17—H25 | 0.980 |
C16—C17 | 1.523 (4) | ||
S1—Ni—S1i | 180 | H5—C7—H7 | 109.469 |
S1—Ni—N1 | 85.67 (5) | H6—C7—H7 | 109.468 |
S1—Ni—N1i | 94.33 (5) | N1—C8—H8 | 113.566 |
S1i—Ni—N1 | 94.33 (5) | C1—C8—H8 | 113.564 |
S1i—Ni—N1i | 85.67 (5) | S2—C10—H9 | 108.878 |
N1—Ni—N1i | 180 | S2—C10—H10 | 108.867 |
Ni—S1—C9 | 96.01 (7) | C11—C10—H9 | 108.875 |
C9—S2—C10 | 102.83 (10) | C11—C10—H10 | 108.870 |
C4—O1—C7 | 117.90 (18) | H9—C10—H10 | 107.715 |
Ni—N1—N2 | 120.42 (14) | C10—C11—H11 | 109.150 |
Ni—N1—C8 | 125.18 (14) | C10—C11—H12 | 109.154 |
N2—N1—C8 | 114.39 (18) | C12—C11—H11 | 109.156 |
N1—N2—C9 | 111.78 (18) | C12—C11—H12 | 109.148 |
C2—C1—C6 | 117.6 (2) | H11—C11—H12 | 107.871 |
C2—C1—C8 | 114.61 (18) | C11—C12—H13 | 108.897 |
C6—C1—C8 | 127.8 (2) | C11—C12—H14 | 108.908 |
C1—C2—C3 | 122.6 (2) | C13—C12—H13 | 108.898 |
C2—C3—C4 | 118.7 (2) | C13—C12—H14 | 108.904 |
O1—C4—C3 | 124.3 (2) | H13—C12—H14 | 107.731 |
O1—C4—C5 | 116.1 (2) | C12—C13—H15 | 108.904 |
C3—C4—C5 | 119.7 (3) | C12—C13—H16 | 108.898 |
C4—C5—C6 | 121.2 (2) | C14—C13—H15 | 108.903 |
C1—C6—C5 | 120.2 (2) | C14—C13—H16 | 108.909 |
N1—C8—C1 | 132.87 (18) | H15—C13—H16 | 107.731 |
S1—C9—S2 | 114.13 (12) | C13—C14—H17 | 108.794 |
S1—C9—N2 | 124.92 (15) | C13—C14—H18 | 108.791 |
S2—C9—N2 | 120.93 (17) | C15—C14—H17 | 108.796 |
S2—C10—C11 | 113.48 (16) | C15—C14—H18 | 108.799 |
C10—C11—C12 | 112.26 (18) | H17—C14—H18 | 107.675 |
C11—C12—C13 | 113.35 (18) | C14—C15—H19 | 108.797 |
C12—C13—C14 | 113.35 (19) | C14—C15—H20 | 108.794 |
C13—C14—C15 | 113.81 (19) | C16—C15—H19 | 108.799 |
C14—C15—C16 | 113.81 (19) | C16—C15—H20 | 108.804 |
C15—C16—C17 | 113.3 (2) | H19—C15—H20 | 107.669 |
C1—C2—H1 | 118.691 | C15—C16—H21 | 108.921 |
C3—C2—H1 | 118.690 | C15—C16—H22 | 108.918 |
C2—C3—H2 | 120.632 | C17—C16—H21 | 108.926 |
C4—C3—H2 | 120.627 | C17—C16—H22 | 108.913 |
C4—C5—H3 | 119.383 | H21—C16—H22 | 107.738 |
C6—C5—H3 | 119.378 | C16—C17—H23 | 109.473 |
C1—C6—H4 | 119.926 | C16—C17—H24 | 109.467 |
C5—C6—H4 | 119.914 | C16—C17—H25 | 109.462 |
O1—C7—H5 | 109.474 | H23—C17—H24 | 109.479 |
O1—C7—H6 | 109.474 | H23—C17—H25 | 109.474 |
O1—C7—H7 | 109.472 | H24—C17—H25 | 109.472 |
H5—C7—H6 | 109.470 | ||
S1—Ni—N1—N2 | −11.14 (10) | C8—N1—N2—C9 | −167.88 (15) |
S1—Ni—N1—C8 | 167.80 (12) | N1—N2—C9—S1 | −3.7 (3) |
N1—Ni—S1—C9 | 6.77 (5) | N1—N2—C9—S2 | 174.53 (13) |
S1—Ni—N1i—N2i | −168.86 (10) | C2—C1—C6—C5 | 1.2 (3) |
S1—Ni—N1i—C8i | 12.20 (12) | C6—C1—C2—C3 | −0.9 (3) |
N1i—Ni—S1—C9 | −173.23 (5) | C2—C1—C8—N1 | 176.14 (18) |
S1i—Ni—N1—N2 | 168.86 (10) | C8—C1—C2—C3 | 177.33 (15) |
S1i—Ni—N1—C8 | −12.20 (12) | C6—C1—C8—N1 | −5.8 (4) |
N1—Ni—S1i—C9i | 173.23 (5) | C8—C1—C6—C5 | −176.73 (17) |
S1i—Ni—N1i—N2i | 11.14 (10) | C1—C2—C3—C4 | −0.3 (3) |
S1i—Ni—N1i—C8i | −167.80 (12) | C2—C3—C4—O1 | −178.68 (17) |
N1i—Ni—S1i—C9i | −6.77 (5) | C2—C3—C4—C5 | 1.2 (3) |
Ni—S1—C9—S2 | 177.99 (9) | O1—C4—C5—C6 | 179.01 (17) |
Ni—S1—C9—N2 | −3.64 (16) | C3—C4—C5—C6 | −0.9 (3) |
C9—S2—C10—C11 | 84.61 (13) | C4—C5—C6—C1 | −0.4 (3) |
C10—S2—C9—S1 | 178.65 (11) | S2—C10—C11—C12 | 175.43 (11) |
C10—S2—C9—N2 | 0.21 (17) | C10—C11—C12—C13 | −174.38 (15) |
C7—O1—C4—C3 | 6.1 (3) | C11—C12—C13—C14 | 177.19 (15) |
C7—O1—C4—C5 | −173.77 (16) | C12—C13—C14—C15 | −179.74 (15) |
Ni—N1—N2—C9 | 11.17 (19) | C13—C14—C15—C16 | −176.95 (15) |
Ni—N1—C8—C1 | 176.31 (13) | C14—C15—C16—C17 | 177.52 (15) |
N2—N1—C8—C1 | −4.7 (3) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Acknowledgements
KB and MSB are grateful to the Department of Chemistry, Shahjalal University of Science and Technology, Sylhet-3114, for the provision of laboratory facilities.
Funding information
MCS acknowledges the Department of Applied Chemistry, Toyama University, for providing funds for single-crystal X-ray analyses.
References
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