metal-organic compounds
Chloridobis(ethane-1,2-diamine-κ2N,N′)(3-methylpyridine-κN)cobalt(III) dichloride monohydrate
aDepartment of Physics, Presidency College (Autonomous), Chennai 600 005, India, bDepartment of Chemistry, Chellammal Womens College, Guindy, Chennai 600 032, India, and cDepartment of Chemistry, Pondicherry University, Pondicherry 605 014, India
*Correspondence e-mail: ksakthimurugesan2492@gmail.com
In the title hydrated salt, [CoCl(C6H7N)(C2H8N2)2]Cl2·H2O, the CoIII ion exhibits a distorted octahedral coordination envirnoment defined by four N atoms of two ethane-1,2-diamine ligands, another N atom of the pyridine ligand and a Cl− ligand. The pyridine N atom and the Cl− ligand are in cis positions relative to each other. The crystal packing is dominated by intermolecular N—H⋯Cl, O—H⋯Cl and O—H⋯H hydrogen-bonding interactions involving the amino groups of the complex cation, the lattice water molecule and the non-coordinating Cl− anions. Weak C—H⋯Cl interactions consolidate the three-dimensional hydrogen-bonded network structure.
Keywords: crystal structure; ethane-1,2-diamine ligand; 3-methylpyridine ligand; cobalt(III); hydrogen bonding.
CCDC reference: 794322
Structure description
Cobalt is an essential and integral component of vitamin B12. Hence it is found physiologically in most tissues. Complexes of cobalt are useful for nutritional supplementation to provide this element in a form that effectively increases the bioavailability, for instance, vitamin B12 by microorganisms present in the gut. Cobalt(III) complexes with ethane-1,2-diamine or with mixed ligands exhibit antitumor, antibacterial, antimicrobial, radiosenzitation and cytotoxicity activities (Sayed et al., 1992; Teicher et al., 1990; Arslan et al., 2009; Delehanty et al., 2008). In addition, cobalt(III) complexes are known for electron-transfer and ligand-substitution reactions. In this context, we have synthesized another cobalt(III) complex with mixed ligands, [CoCl(C6H7N)(C2H8N2)2]Cl2·H2O, and report here its crystal structure.
The structural entities of the title compound are shown in Fig. 1. The CoIII cation is octahedrally surrounded by four N atoms of two ethane-1,2-diamine ligands, a pyridine N atom and a Cl− ligand, whereby the pyridine N atom and the Cl− ligand are cis to each other. The Co—N and Co—Cl bond lengths are typical for trivalent cobalt and comparable with related complexes comprising of N- and Cl-donating ligands (Anbalagan et al., 2009; Ramesh et al., 2008; Ravichandran et al., 2009). The least-squares planes of the two ethane-1,2-diamine ligands make a dihedral angle of 78.0 (2)°. Puckering parameters for the Co1/N1/C9/C8/N2 and Co1/N3/C7/C6/N4 rings are: q2 = 0.439 (3) Å, φ = 86.4 (3)° and q2 = 0.422 (3)°, φ = 82.2 (3)°, respectively. According to Nardelli (1983), ring asymmetry parameters from out-of-plane displacements are Δ2(Co1) = 3.6 (2)°for the first metalla ring and Δ2(Co1) = 7.4 (2)° for the second ring.
The complex cation, chloride anions and lattice water molecule are linked into a three-dimensional network by intermolecular N—H⋯Cl, O—H⋯Cl and O—H⋯O hydrogen-bonding interactions, supplemented by weaker C—H⋯Cl interactions (Table 1 and Fig. 2). This involves an R22(4) ring motif between two adjacent water molecules (Fig. 3).
Synthesis and crystallization
The complex was synthesized using dichloridobis(ethane-1,2-diamine)cobalt(III) chloride (Bailar & Clapp, 1945) as a precursor. trans-[CoIII(en)2Cl2]Cl (2 g) was suspended in 3–4 drops of deionized water. Then 3-methylpyridine (3 ml) was added dropwise for 20 min, resulting in a colour change from dull green to violet–red. The final mixture was stirred for 30 min and continued for another 30 min until no further change was observed. The mixture was allowed to stand overnight. Finally, the obtained solid was washed 3–4 times with ethanol and dissolved in 5–10 ml of deionized water that had been pre-heated to 343 K. The title cobalt(III) complex was recrystallized by cooling this solution to which a few drops of conc. HCl were added. The resulting crystals were filtered, washed with ethanol and dried under vacuum.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2
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Structural data
CCDC reference: 794322
https://doi.org/10.1107/S2414314618010258/wm4082sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314618010258/wm4082Isup2.hkl
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015) and PLATON (Spek, 2009).[CoCl(C6H7N)(C2H8N2)2]Cl2·H2O | Z = 2 |
Mr = 396.63 | F(000) = 412 |
Triclinic, P1 | Dx = 1.580 Mg m−3 |
a = 7.6771 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.8911 (5) Å | Cell parameters from 2456 reflections |
c = 11.6132 (7) Å | θ = 2.8–25.0° |
α = 113.439 (5)° | µ = 1.51 mm−1 |
β = 99.872 (5)° | T = 293 K |
γ = 102.384 (4)° | Block, violet-red |
V = 833.67 (8) Å3 | 0.25 × 0.20 × 0.15 mm |
Bruker SMART APEXII CCD diffractometer | 2456 reflections with I > 2σ(I) |
ω and φ scans | Rint = 0.025 |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | θmax = 25.0°, θmin = 2.8° |
h = −8→9 | |
5316 measured reflections | k = −12→12 |
2929 independent reflections | l = −13→13 |
Refinement on F2 | 16 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.032 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0515P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
2929 reflections | Δρmax = 0.61 e Å−3 |
219 parameters | Δρmin = −0.37 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. H atoms of water molecules and amino groups were located from difference maps and refined with restraints on their bond lengths [(N,O)—H = 0.85 Å]). |
x | y | z | Uiso*/Ueq | ||
C1 | 0.3844 (3) | 0.2624 (3) | 1.1036 (3) | 0.0201 (6) | |
H1 | 0.4616 | 0.2135 | 1.0660 | 0.024* | |
C2 | 0.4109 (4) | 0.3106 (3) | 1.2368 (3) | 0.0234 (6) | |
C3 | 0.2932 (4) | 0.3807 (3) | 1.2909 (3) | 0.0262 (7) | |
H3 | 0.3058 | 0.4145 | 1.3801 | 0.031* | |
C4 | 0.1575 (4) | 0.4004 (3) | 1.2127 (3) | 0.0258 (7) | |
H4 | 0.0770 | 0.4468 | 1.2485 | 0.031* | |
C5 | 0.1409 (3) | 0.3511 (3) | 1.0809 (3) | 0.0218 (6) | |
H5 | 0.0495 | 0.3658 | 1.0287 | 0.026* | |
C6 | 0.5567 (4) | 0.2506 (3) | 0.7483 (3) | 0.0234 (6) | |
H6A | 0.5676 | 0.1565 | 0.7171 | 0.028* | |
H6B | 0.6754 | 0.3155 | 0.7618 | 0.028* | |
C7 | 0.4074 (4) | 0.2550 (3) | 0.6496 (3) | 0.0249 (6) | |
H7A | 0.4120 | 0.3515 | 0.6712 | 0.030* | |
H7B | 0.4222 | 0.2111 | 0.5626 | 0.030* | |
C8 | 0.0579 (3) | −0.0546 (3) | 0.7964 (3) | 0.0205 (6) | |
H8A | 0.0380 | −0.0344 | 0.8815 | 0.025* | |
H8B | 0.0465 | −0.1537 | 0.7514 | 0.025* | |
C9 | −0.0815 (3) | −0.0193 (3) | 0.7177 (3) | 0.0193 (6) | |
H9A | −0.0744 | −0.0526 | 0.6283 | 0.023* | |
H9B | −0.2067 | −0.0630 | 0.7162 | 0.023* | |
C10 | 0.5621 (4) | 0.2841 (3) | 1.3149 (3) | 0.0361 (8) | |
H10A | 0.6269 | 0.2340 | 1.2583 | 0.054* | |
H10B | 0.6479 | 0.3724 | 1.3820 | 0.054* | |
H10C | 0.5085 | 0.2290 | 1.3546 | 0.054* | |
N1 | −0.0337 (3) | 0.1366 (2) | 0.7830 (2) | 0.0169 (5) | |
N2 | 0.2452 (3) | 0.0339 (2) | 0.8119 (2) | 0.0157 (5) | |
N3 | 0.2283 (3) | 0.1755 (2) | 0.6559 (2) | 0.0174 (5) | |
N4 | 0.5063 (3) | 0.2910 (2) | 0.8731 (2) | 0.0176 (5) | |
N5 | 0.2547 (3) | 0.2816 (2) | 1.0253 (2) | 0.0162 (5) | |
Cl2 | 0.20805 (9) | 0.43180 (7) | 0.85882 (7) | 0.02175 (17) | |
Cl3 | 0.69806 (8) | 0.09570 (7) | 0.95580 (7) | 0.02316 (18) | |
Cl4 | 0.21383 (9) | −0.14314 (7) | 0.49221 (6) | 0.02355 (18) | |
Co1 | 0.23612 (4) | 0.22144 (3) | 0.83760 (3) | 0.01406 (13) | |
O1 | −0.0839 (4) | −0.4040 (3) | 0.4680 (4) | 0.0880 (12) | |
H1C | 0.017 (5) | −0.341 (4) | 0.477 (4) | 0.106* | |
H1D | −0.061 (6) | −0.415 (3) | 0.536 (2) | 0.106* | |
H1A | −0.087 (3) | 0.157 (3) | 0.8438 (19) | 0.021 (8)* | |
H1B | −0.088 (3) | 0.159 (3) | 0.727 (2) | 0.011 (7)* | |
H2A | 0.270 (3) | −0.007 (2) | 0.7402 (16) | 0.005 (6)* | |
H2B | 0.324 (3) | 0.033 (3) | 0.8730 (18) | 0.024 (8)* | |
H3A | 0.207 (4) | 0.0875 (19) | 0.613 (3) | 0.035 (9)* | |
H3B | 0.149 (3) | 0.201 (3) | 0.617 (3) | 0.035 (9)* | |
H4A | 0.559 (3) | 0.255 (2) | 0.914 (2) | 0.021 (8)* | |
H4B | 0.545 (3) | 0.3800 (17) | 0.918 (3) | 0.021 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0157 (13) | 0.0211 (14) | 0.0193 (15) | 0.0033 (11) | 0.0038 (11) | 0.0069 (12) |
C2 | 0.0220 (15) | 0.0205 (14) | 0.0203 (15) | −0.0022 (12) | −0.0005 (12) | 0.0091 (12) |
C3 | 0.0342 (17) | 0.0233 (15) | 0.0155 (15) | 0.0023 (13) | 0.0085 (12) | 0.0063 (13) |
C4 | 0.0300 (16) | 0.0222 (14) | 0.0237 (16) | 0.0076 (13) | 0.0134 (13) | 0.0070 (13) |
C5 | 0.0168 (14) | 0.0233 (14) | 0.0251 (16) | 0.0066 (12) | 0.0066 (12) | 0.0102 (13) |
C6 | 0.0155 (14) | 0.0317 (15) | 0.0251 (16) | 0.0046 (12) | 0.0096 (12) | 0.0146 (13) |
C7 | 0.0222 (15) | 0.0297 (15) | 0.0232 (16) | 0.0029 (12) | 0.0084 (12) | 0.0141 (13) |
C8 | 0.0200 (14) | 0.0208 (14) | 0.0223 (15) | 0.0044 (11) | 0.0079 (11) | 0.0117 (12) |
C9 | 0.0135 (13) | 0.0218 (14) | 0.0184 (15) | 0.0000 (11) | 0.0037 (11) | 0.0082 (12) |
C10 | 0.0334 (17) | 0.0446 (19) | 0.0266 (18) | 0.0097 (15) | 0.0021 (14) | 0.0162 (15) |
N1 | 0.0144 (11) | 0.0241 (12) | 0.0141 (12) | 0.0067 (10) | 0.0034 (10) | 0.0104 (11) |
N2 | 0.0129 (11) | 0.0204 (11) | 0.0107 (12) | 0.0032 (9) | 0.0008 (9) | 0.0061 (10) |
N3 | 0.0155 (12) | 0.0191 (12) | 0.0180 (13) | 0.0036 (10) | 0.0030 (10) | 0.0105 (11) |
N4 | 0.0140 (11) | 0.0182 (12) | 0.0175 (13) | 0.0036 (10) | 0.0009 (9) | 0.0071 (11) |
N5 | 0.0143 (11) | 0.0172 (11) | 0.0145 (12) | 0.0021 (9) | 0.0033 (9) | 0.0065 (10) |
Cl2 | 0.0220 (3) | 0.0182 (3) | 0.0227 (4) | 0.0065 (3) | 0.0029 (3) | 0.0082 (3) |
Cl3 | 0.0162 (3) | 0.0339 (4) | 0.0271 (4) | 0.0100 (3) | 0.0087 (3) | 0.0191 (3) |
Cl4 | 0.0265 (4) | 0.0270 (4) | 0.0179 (4) | 0.0121 (3) | 0.0043 (3) | 0.0099 (3) |
Co1 | 0.0103 (2) | 0.0168 (2) | 0.0132 (2) | 0.00278 (14) | 0.00175 (14) | 0.00627 (16) |
O1 | 0.069 (2) | 0.067 (2) | 0.156 (4) | 0.0194 (17) | 0.063 (2) | 0.066 (2) |
C1—N5 | 1.339 (4) | C9—N1 | 1.485 (3) |
C1—C2 | 1.381 (4) | C9—H9A | 0.9700 |
C1—H1 | 0.9300 | C9—H9B | 0.9700 |
C2—C3 | 1.380 (4) | C10—H10A | 0.9600 |
C2—C10 | 1.499 (4) | C10—H10B | 0.9600 |
C3—C4 | 1.373 (4) | C10—H10C | 0.9600 |
C3—H3 | 0.9300 | N1—Co1 | 1.952 (2) |
C4—C5 | 1.377 (4) | N1—H1A | 0.852 (15) |
C4—H4 | 0.9300 | N1—H1B | 0.859 (16) |
C5—N5 | 1.357 (3) | N2—Co1 | 1.962 (2) |
C5—H5 | 0.9300 | N2—H2A | 0.852 (15) |
C6—N4 | 1.484 (3) | N2—H2B | 0.858 (16) |
C6—C7 | 1.499 (4) | N3—Co1 | 1.952 (2) |
C6—H6A | 0.9700 | N3—H3A | 0.847 (17) |
C6—H6B | 0.9700 | N3—H3B | 0.855 (17) |
C7—N3 | 1.490 (3) | N4—Co1 | 1.957 (2) |
C7—H7A | 0.9700 | N4—H4A | 0.836 (16) |
C7—H7B | 0.9700 | N4—H4B | 0.848 (16) |
C8—N2 | 1.485 (3) | N5—Co1 | 1.980 (2) |
C8—C9 | 1.500 (4) | Cl2—Co1 | 2.2664 (7) |
C8—H8A | 0.9700 | O1—H1C | 0.874 (18) |
C8—H8B | 0.9700 | O1—H1D | 0.845 (19) |
N5—C1—C2 | 124.2 (2) | H10B—C10—H10C | 109.5 |
N5—C1—H1 | 117.9 | C9—N1—Co1 | 109.48 (15) |
C2—C1—H1 | 117.9 | C9—N1—H1A | 106.5 (18) |
C3—C2—C1 | 117.3 (3) | Co1—N1—H1A | 116.0 (18) |
C3—C2—C10 | 123.2 (3) | C9—N1—H1B | 106.8 (18) |
C1—C2—C10 | 119.5 (3) | Co1—N1—H1B | 111.6 (16) |
C4—C3—C2 | 119.7 (3) | H1A—N1—H1B | 106.0 (19) |
C4—C3—H3 | 120.1 | C8—N2—Co1 | 109.53 (16) |
C2—C3—H3 | 120.1 | C8—N2—H2A | 105.7 (16) |
C3—C4—C5 | 119.7 (3) | Co1—N2—H2A | 109.5 (16) |
C3—C4—H4 | 120.1 | C8—N2—H2B | 108.4 (19) |
C5—C4—H4 | 120.1 | Co1—N2—H2B | 115.4 (19) |
N5—C5—C4 | 121.6 (3) | H2A—N2—H2B | 107.8 (19) |
N5—C5—H5 | 119.2 | C7—N3—Co1 | 110.22 (16) |
C4—C5—H5 | 119.2 | C7—N3—H3A | 111 (2) |
N4—C6—C7 | 108.4 (2) | Co1—N3—H3A | 109 (2) |
N4—C6—H6A | 110.0 | C7—N3—H3B | 102 (2) |
C7—C6—H6A | 110.0 | Co1—N3—H3B | 115 (2) |
N4—C6—H6B | 110.0 | H3A—N3—H3B | 109 (2) |
C7—C6—H6B | 110.0 | C6—N4—Co1 | 110.18 (16) |
H6A—C6—H6B | 108.4 | C6—N4—H4A | 107.2 (19) |
N3—C7—C6 | 105.6 (2) | Co1—N4—H4A | 110.4 (19) |
N3—C7—H7A | 110.6 | C6—N4—H4B | 110.0 (19) |
C6—C7—H7A | 110.6 | Co1—N4—H4B | 109.6 (17) |
N3—C7—H7B | 110.6 | H4A—N4—H4B | 109 (2) |
C6—C7—H7B | 110.6 | C1—N5—C5 | 117.4 (2) |
H7A—C7—H7B | 108.8 | C1—N5—Co1 | 121.98 (17) |
N2—C8—C9 | 107.0 (2) | C5—N5—Co1 | 120.51 (19) |
N2—C8—H8A | 110.3 | N1—Co1—N3 | 89.50 (9) |
C9—C8—H8A | 110.3 | N1—Co1—N4 | 173.58 (9) |
N2—C8—H8B | 110.3 | N3—Co1—N4 | 85.02 (9) |
C9—C8—H8B | 110.3 | N1—Co1—N2 | 85.27 (9) |
H8A—C8—H8B | 108.6 | N3—Co1—N2 | 91.85 (10) |
N1—C9—C8 | 106.3 (2) | N4—Co1—N2 | 91.55 (10) |
N1—C9—H9A | 110.5 | N1—Co1—N5 | 93.08 (9) |
C8—C9—H9A | 110.5 | N3—Co1—N5 | 176.00 (9) |
N1—C9—H9B | 110.5 | N4—Co1—N5 | 92.58 (9) |
C8—C9—H9B | 110.5 | N2—Co1—N5 | 91.41 (9) |
H9A—C9—H9B | 108.7 | N1—Co1—Cl2 | 91.55 (7) |
C2—C10—H10A | 109.5 | N3—Co1—Cl2 | 86.76 (7) |
C2—C10—H10B | 109.5 | N4—Co1—Cl2 | 91.49 (8) |
H10A—C10—H10B | 109.5 | N2—Co1—Cl2 | 176.54 (7) |
C2—C10—H10C | 109.5 | N5—Co1—Cl2 | 90.11 (7) |
H10A—C10—H10C | 109.5 | H1C—O1—H1D | 105 (3) |
N5—C1—C2—C3 | 1.2 (4) | C8—C9—N1—Co1 | 41.2 (2) |
N5—C1—C2—C10 | −179.4 (3) | C9—C8—N2—Co1 | 38.1 (2) |
C1—C2—C3—C4 | −0.3 (4) | C6—C7—N3—Co1 | 40.9 (2) |
C10—C2—C3—C4 | −179.7 (3) | C7—C6—N4—Co1 | 34.9 (3) |
C2—C3—C4—C5 | −0.6 (4) | C2—C1—N5—C5 | −1.0 (4) |
C3—C4—C5—N5 | 0.7 (4) | C2—C1—N5—Co1 | 175.57 (19) |
N4—C6—C7—N3 | −48.6 (3) | C4—C5—N5—C1 | 0.0 (4) |
N2—C8—C9—N1 | −51.2 (3) | C4—C5—N5—Co1 | −176.61 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···Cl3 | 0.93 | 2.66 | 3.585 (3) | 174 |
C8—H8A···Cl3i | 0.97 | 2.90 | 3.395 (3) | 113 |
C9—H9B···Cl3ii | 0.97 | 2.95 | 3.440 (3) | 113 |
N1—H1A···Cl3ii | 0.85 (2) | 2.41 (2) | 3.194 (2) | 153 (2) |
N1—H1B···Cl4iii | 0.86 (2) | 2.48 (2) | 3.292 (2) | 157 (2) |
N2—H2A···Cl4 | 0.85 (2) | 2.57 (2) | 3.370 (2) | 158 (2) |
N2—H2B···Cl3 | 0.86 (2) | 2.70 (2) | 3.383 (2) | 137 (2) |
N2—H2B···Cl3i | 0.86 (2) | 2.86 (2) | 3.514 (3) | 135 (2) |
N3—H3A···Cl4 | 0.85 (2) | 2.36 (2) | 3.191 (2) | 168 (3) |
N3—H3B···Cl4iii | 0.86 (2) | 2.67 (2) | 3.406 (2) | 144 (2) |
N4—H4A···Cl3 | 0.84 (2) | 2.38 (2) | 3.178 (3) | 160 (2) |
N4—H4B···Cl2iv | 0.85 (2) | 2.64 (2) | 3.310 (2) | 137 (2) |
O1—H1C···Cl4 | 0.87 (2) | 2.28 (2) | 3.120 (3) | 162 (4) |
O1—H1D···O1v | 0.85 (2) | 2.45 (1) | 2.940 (7) | 118 (1) |
Symmetry codes: (i) −x+1, −y, −z+2; (ii) x−1, y, z; (iii) −x, −y, −z+1; (iv) −x+1, −y+1, −z+2; (v) −x, −y−1, −z+1. |
Funding information
KA records his sincere thanks to the Council of Scientific and Industrial Research- HRDG, New Delhi, Department of Science and Technology – SERC, Government of India, New Delhi for financial support through major research projects.
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