organic compounds
1-Methyl-4-phenyl-3-[4-(trifluoromethyl)phenyl]-1H-pyrazolo[3,4-d]pyrimidine
aLaboratoire de Chimie Organique Hétérocyclique, Centre de Recherche Des Sciences des Médicaments, Pôle de Compétence Pharmacochimie, Av Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco, bLaboratory of Medicinal Chemistry, Faculty of Medicine and Pharmacy, Mohammed V, University Rabat, Morocco, and cDepartment of Chemistry, Tulane University, New Orleans, LA 70118, USA
*Correspondence e-mail: m.elhafi1@yahoo.com
In the title molecule, C19H13F3N4, the pyrazolopyrimidine unit is slightly non-planar [dihedral angle between the five- and six-membered rings = 3.03 (15)°]. In the crystal, offset head-to-tail π-stacking interactions between pyrazolopyrimidine units [centroid–centroid separation = 3.665 (2) Å] together with weak C—H⋯N hydrogen bonds form stepped chains propagating along the c-axis direction. The structure was refined as a two-component twin.
Keywords: crystal structure; hydrogen bond; π-stacking; pyrimidine; crystal structure.
CCDC reference: 1849367
Structure description
Pyrazolo [3,4-d] pyrimidine derivatives display a broad spectrum of biological properties, such as antiviral (Bektemirov et al., 1981), antibacterial (Rostamizadeh et al., 2013) and antitumor (Tintori et al., 2015). The present work is a continuation of our studies of pyrazolo[3,4-d]pyrimidine derivatives (El Hafi et al., 2017).
In the title molecule (Fig. 1), the pyrazolopyrimidine unit is slightly non-planar as indicated by the dihedral angle of 3.03 (15)° between the mean planes of the five- and six-membered rings. The plane of the C7–C12 benzene ring bearing the CF3 substituent is inclined to the pyrazole moiety by 31.98 (16)° while the plane of the C14–C19 benzene ring is inclined by 50.69 (14)° to that of the pyrimidine ring.
In the crystal, offset, head-to-tail π-stacking interactions between adjacent pyrazolopyrimidine units reinforced by weak, complementary C6—H6B⋯N1 hydrogen bonds form centrosymmetric dimers, which are connected into stepped chains along the c axis direction by weak, complementary C4—H4⋯N2 hydrogen bonds (Table 1 and Figs. 2 and 3). The centroid–centroid distance for the π-stacking interaction is 3.665 (2) Å.
Synthesis and crystallization
A mixture 1-methyl-4-phenyl-1H-pyrazolo [3,4-d] pyrimidine (0.1 g, 0.47 mmol), 4-iodobenzotrifluoride (0.26 g, 0.95 mmol), Cs2CO3 (0.46 g, 1.42 mmol), K3PO4 (0.25 g, 1.18 mmol), 1,10- phenanthroline (0.034 g, 0.19 mmol), and Pd(OAc)2 (0.021 g, 0.094 mmol) was dissolved/suspended in DMA (3 ml). The resulting mixture was flushed with argon and heated to 165°C for 48 h. After completion of the reaction, the mixture was cooled to room temperature, and the solvent was removed under reduced pressure. Water (15 ml) was added, and the resulting aqueous phase was extracted with CH2Cl2 (3 × 15 ml). The combined organic layers were dried with MgSO4 and concentrated under vacuum. The residue was purified by on silica gel (mixed solvents of EtOAc/ petroleum ether). The title compound was recrystallized from ethanol solution at room temperature in the form of colourless plates (yield: 65%; m.p. 418–420 K).
Refinement
Crystal data, data collection and structure . The structure was refined as a two-component twin.
details are summarized in Table 2Structural data
CCDC reference: 1849367
https://doi.org/10.1107/S2414314618008751/hb4239sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314618008751/hb4239Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314618008751/hb4239Isup3.cdx
Supporting information file. DOI: https://doi.org/10.1107/S2414314618008751/hb4239Isup4.cml
Data collection: APEX3 (Bruker, 2016); cell
SAINT (Bruker, 2016); data reduction: SAINT (Bruker, 2016); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2016 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008a), CELL_NOW (Sheldrick, 2008b).C19H13F3N4 | F(000) = 728 |
Mr = 354.33 | Dx = 1.445 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54178 Å |
a = 15.0553 (10) Å | Cell parameters from 9981 reflections |
b = 15.7338 (12) Å | θ = 3.0–72.5° |
c = 6.9701 (5) Å | µ = 0.96 mm−1 |
β = 99.540 (4)° | T = 150 K |
V = 1628.2 (2) Å3 | Plate, colourless |
Z = 4 | 0.19 × 0.12 × 0.02 mm |
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 16740 independent reflections |
Radiation source: INCOATEC IµS micro-focus source | 12748 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.046 |
Detector resolution: 10.4167 pixels mm-1 | θmax = 72.5°, θmin = 3.0° |
ω scans | h = −18→18 |
Absorption correction: multi-scan (TWINABS; Sheldrick, 2009) | k = −18→18 |
Tmin = 0.84, Tmax = 0.98 | l = −8→8 |
17099 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.147 | All H-atom parameters refined |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0509P)2 + 0.8087P] where P = (Fo2 + 2Fc2)/3 |
16740 reflections | (Δ/σ)max < 0.001 |
288 parameters | Δρmax = 0.45 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
Experimental. Analysis of 1332 reflections having I/σ(I) > 12 and chosen from the full data set with CELL_NOW (Sheldrick, 2008b) showed the crystal to belong to the monoclinic system and to be twinned by a 180° rotation about the a axis. The raw data were processed using the multi-component version ofSAINT under control of the two-component orientation file generated by CELL_NOW. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Refined as a 2-component twin. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.93746 (17) | 0.43794 (15) | −0.1891 (4) | 0.0744 (8) | |
F2 | 1.00377 (15) | 0.3438 (2) | −0.0044 (4) | 0.0895 (10) | |
F3 | 0.90729 (18) | 0.31053 (18) | −0.2496 (4) | 0.0824 (9) | |
N1 | 0.64088 (16) | 0.55427 (16) | 0.7611 (4) | 0.0311 (6) | |
N2 | 0.52893 (16) | 0.44411 (16) | 0.7545 (4) | 0.0315 (6) | |
N3 | 0.53400 (15) | 0.34150 (15) | 0.4998 (4) | 0.0300 (6) | |
N4 | 0.58613 (15) | 0.32541 (15) | 0.3609 (4) | 0.0305 (6) | |
C1 | 0.64887 (18) | 0.38622 (18) | 0.3746 (4) | 0.0277 (6) | |
C2 | 0.63661 (18) | 0.44456 (18) | 0.5265 (4) | 0.0266 (6) | |
C3 | 0.67118 (18) | 0.52239 (18) | 0.6055 (4) | 0.0274 (6) | |
C4 | 0.5736 (2) | 0.5126 (2) | 0.8265 (5) | 0.0337 (7) | |
H4 | 0.5549 (19) | 0.5358 (19) | 0.941 (5) | 0.031 (8)* | |
C5 | 0.56320 (18) | 0.41149 (18) | 0.6036 (4) | 0.0274 (6) | |
C6 | 0.4576 (2) | 0.2875 (2) | 0.5169 (6) | 0.0353 (7) | |
H6A | 0.477 (2) | 0.228 (2) | 0.522 (6) | 0.048 (10)* | |
H6B | 0.407 (2) | 0.298 (2) | 0.405 (6) | 0.036 (9)* | |
H6C | 0.435 (2) | 0.305 (2) | 0.635 (7) | 0.053 (11)* | |
C7 | 0.71865 (19) | 0.38123 (18) | 0.2509 (4) | 0.0272 (6) | |
C8 | 0.6999 (2) | 0.34624 (19) | 0.0652 (5) | 0.0294 (7) | |
H8 | 0.641 (2) | 0.3240 (17) | 0.017 (5) | 0.023 (7)* | |
C9 | 0.7662 (2) | 0.33996 (19) | −0.0502 (5) | 0.0311 (7) | |
H9 | 0.753 (2) | 0.315 (2) | −0.175 (6) | 0.048 (10)* | |
C10 | 0.8521 (2) | 0.36943 (18) | 0.0192 (5) | 0.0306 (7) | |
C11 | 0.8724 (2) | 0.4041 (2) | 0.2034 (5) | 0.0338 (7) | |
H11 | 0.935 (2) | 0.425 (2) | 0.253 (6) | 0.045 (10)* | |
C12 | 0.8064 (2) | 0.4091 (2) | 0.3195 (5) | 0.0322 (7) | |
H12 | 0.821 (2) | 0.434 (2) | 0.447 (5) | 0.036 (9)* | |
C13 | 0.9243 (2) | 0.3649 (2) | −0.1037 (5) | 0.0370 (8) | |
C14 | 0.73663 (19) | 0.57372 (18) | 0.5194 (5) | 0.0282 (7) | |
C15 | 0.8139 (2) | 0.6051 (2) | 0.6335 (5) | 0.0333 (7) | |
H15 | 0.828 (2) | 0.592 (2) | 0.772 (6) | 0.042 (10)* | |
C16 | 0.8760 (2) | 0.6503 (2) | 0.5480 (6) | 0.0405 (8) | |
H16 | 0.931 (2) | 0.668 (2) | 0.627 (6) | 0.044 (10)* | |
C17 | 0.8595 (2) | 0.6674 (2) | 0.3512 (6) | 0.0427 (9) | |
H17 | 0.903 (3) | 0.698 (2) | 0.296 (6) | 0.053 (11)* | |
C18 | 0.7813 (2) | 0.6387 (2) | 0.2375 (6) | 0.0418 (8) | |
H18 | 0.768 (2) | 0.652 (2) | 0.110 (6) | 0.052 (11)* | |
C19 | 0.7201 (2) | 0.5910 (2) | 0.3209 (5) | 0.0341 (7) | |
H19 | 0.668 (2) | 0.570 (2) | 0.245 (6) | 0.040 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0874 (17) | 0.0592 (15) | 0.092 (2) | 0.0045 (12) | 0.0588 (16) | 0.0163 (13) |
F2 | 0.0474 (13) | 0.177 (3) | 0.0493 (14) | 0.0533 (16) | 0.0231 (12) | 0.0258 (17) |
F3 | 0.0830 (17) | 0.0977 (19) | 0.0802 (19) | −0.0278 (14) | 0.0537 (15) | −0.0485 (16) |
N1 | 0.0312 (13) | 0.0380 (14) | 0.0253 (13) | 0.0007 (10) | 0.0077 (11) | −0.0008 (11) |
N2 | 0.0297 (13) | 0.0390 (15) | 0.0268 (14) | 0.0030 (10) | 0.0075 (11) | 0.0033 (11) |
N3 | 0.0280 (12) | 0.0331 (14) | 0.0300 (14) | 0.0000 (10) | 0.0082 (11) | 0.0020 (11) |
N4 | 0.0287 (12) | 0.0319 (14) | 0.0322 (14) | 0.0037 (10) | 0.0092 (12) | 0.0026 (11) |
C1 | 0.0245 (14) | 0.0318 (16) | 0.0268 (15) | 0.0046 (11) | 0.0039 (12) | 0.0009 (13) |
C2 | 0.0235 (13) | 0.0323 (16) | 0.0239 (15) | 0.0031 (11) | 0.0039 (12) | 0.0022 (12) |
C3 | 0.0256 (14) | 0.0339 (16) | 0.0222 (15) | 0.0036 (11) | 0.0024 (12) | 0.0016 (12) |
C4 | 0.0343 (16) | 0.0433 (19) | 0.0252 (16) | 0.0038 (13) | 0.0100 (13) | 0.0014 (13) |
C5 | 0.0263 (14) | 0.0322 (16) | 0.0233 (15) | 0.0041 (11) | 0.0033 (12) | 0.0033 (12) |
C6 | 0.0327 (16) | 0.0340 (18) | 0.041 (2) | −0.0034 (13) | 0.0116 (16) | 0.0027 (14) |
C7 | 0.0288 (14) | 0.0261 (15) | 0.0274 (16) | 0.0045 (11) | 0.0065 (13) | 0.0034 (12) |
C8 | 0.0300 (15) | 0.0268 (15) | 0.0308 (17) | 0.0003 (12) | 0.0030 (13) | 0.0002 (13) |
C9 | 0.0369 (16) | 0.0306 (16) | 0.0259 (16) | 0.0040 (12) | 0.0059 (14) | −0.0024 (13) |
C10 | 0.0314 (15) | 0.0287 (15) | 0.0336 (17) | 0.0063 (12) | 0.0108 (13) | 0.0017 (13) |
C11 | 0.0268 (15) | 0.0361 (17) | 0.0388 (18) | 0.0023 (12) | 0.0063 (14) | −0.0069 (14) |
C12 | 0.0279 (15) | 0.0385 (18) | 0.0297 (18) | 0.0054 (12) | 0.0034 (13) | −0.0074 (13) |
C13 | 0.0396 (17) | 0.0376 (18) | 0.0360 (19) | 0.0053 (13) | 0.0125 (15) | −0.0004 (14) |
C14 | 0.0272 (14) | 0.0285 (16) | 0.0303 (17) | 0.0028 (11) | 0.0089 (13) | −0.0023 (13) |
C15 | 0.0316 (16) | 0.0360 (17) | 0.0324 (18) | 0.0016 (12) | 0.0060 (14) | −0.0053 (14) |
C16 | 0.0328 (17) | 0.0355 (18) | 0.054 (2) | −0.0033 (13) | 0.0105 (17) | −0.0080 (17) |
C17 | 0.0418 (19) | 0.0365 (19) | 0.055 (2) | −0.0040 (15) | 0.0250 (18) | −0.0006 (17) |
C18 | 0.049 (2) | 0.043 (2) | 0.038 (2) | 0.0016 (15) | 0.0202 (17) | 0.0044 (15) |
C19 | 0.0342 (17) | 0.0399 (18) | 0.0287 (18) | −0.0001 (14) | 0.0070 (14) | 0.0000 (14) |
F1—C13 | 1.324 (4) | C7—C12 | 1.399 (4) |
F2—C13 | 1.321 (4) | C8—C9 | 1.385 (4) |
F3—C13 | 1.321 (4) | C8—H8 | 0.96 (3) |
N1—C3 | 1.342 (4) | C9—C10 | 1.383 (4) |
N1—C4 | 1.348 (4) | C9—H9 | 0.95 (4) |
N2—C4 | 1.324 (4) | C10—C11 | 1.382 (5) |
N2—C5 | 1.347 (4) | C10—C13 | 1.493 (4) |
N3—C5 | 1.350 (4) | C11—C12 | 1.384 (4) |
N3—N4 | 1.367 (3) | C11—H11 | 1.00 (4) |
N3—C6 | 1.451 (4) | C12—H12 | 0.97 (4) |
N4—C1 | 1.337 (4) | C14—C15 | 1.387 (4) |
C1—C2 | 1.436 (4) | C14—C19 | 1.392 (5) |
C1—C7 | 1.468 (4) | C15—C16 | 1.386 (5) |
C2—C3 | 1.406 (4) | C15—H15 | 0.98 (4) |
C2—C5 | 1.406 (4) | C16—C17 | 1.379 (6) |
C3—C14 | 1.476 (4) | C16—H16 | 0.96 (4) |
C4—H4 | 0.96 (3) | C17—C18 | 1.382 (5) |
C6—H6A | 0.99 (4) | C17—H17 | 0.94 (4) |
C6—H6B | 1.01 (4) | C18—C19 | 1.387 (5) |
C6—H6C | 0.98 (5) | C18—H18 | 0.90 (4) |
C7—C8 | 1.392 (4) | C19—H19 | 0.94 (4) |
C3—N1—C4 | 117.8 (3) | C8—C9—H9 | 121 (2) |
C4—N2—C5 | 111.7 (3) | C11—C10—C9 | 120.5 (3) |
C5—N3—N4 | 110.9 (2) | C11—C10—C13 | 118.8 (3) |
C5—N3—C6 | 128.7 (3) | C9—C10—C13 | 120.7 (3) |
N4—N3—C6 | 120.4 (3) | C10—C11—C12 | 119.7 (3) |
C1—N4—N3 | 107.4 (2) | C10—C11—H11 | 120 (2) |
N4—C1—C2 | 109.6 (2) | C12—C11—H11 | 120 (2) |
N4—C1—C7 | 119.1 (3) | C11—C12—C7 | 120.8 (3) |
C2—C1—C7 | 131.3 (3) | C11—C12—H12 | 119.0 (19) |
C3—C2—C5 | 115.8 (3) | C7—C12—H12 | 120.2 (19) |
C3—C2—C1 | 139.5 (3) | F3—C13—F2 | 106.5 (3) |
C5—C2—C1 | 104.5 (2) | F3—C13—F1 | 103.9 (3) |
N1—C3—C2 | 119.2 (3) | F2—C13—F1 | 105.3 (3) |
N1—C3—C14 | 117.6 (3) | F3—C13—C10 | 114.0 (3) |
C2—C3—C14 | 123.1 (3) | F2—C13—C10 | 113.2 (3) |
N2—C4—N1 | 129.1 (3) | F1—C13—C10 | 113.2 (3) |
N2—C4—H4 | 115.1 (18) | C15—C14—C19 | 119.7 (3) |
N1—C4—H4 | 115.8 (19) | C15—C14—C3 | 121.0 (3) |
N2—C5—N3 | 126.6 (3) | C19—C14—C3 | 119.3 (3) |
N2—C5—C2 | 125.7 (3) | C16—C15—C14 | 119.9 (3) |
N3—C5—C2 | 107.7 (2) | C16—C15—H15 | 119 (2) |
N3—C6—H6A | 109 (2) | C14—C15—H15 | 121 (2) |
N3—C6—H6B | 110.0 (19) | C17—C16—C15 | 120.3 (3) |
H6A—C6—H6B | 112 (3) | C17—C16—H16 | 121 (2) |
N3—C6—H6C | 108 (2) | C15—C16—H16 | 119 (2) |
H6A—C6—H6C | 112 (3) | C16—C17—C18 | 120.2 (3) |
H6B—C6—H6C | 106 (3) | C16—C17—H17 | 119 (2) |
C8—C7—C12 | 118.4 (3) | C18—C17—H17 | 121 (2) |
C8—C7—C1 | 120.9 (3) | C17—C18—C19 | 119.9 (3) |
C12—C7—C1 | 120.7 (3) | C17—C18—H18 | 121 (2) |
C9—C8—C7 | 120.9 (3) | C19—C18—H18 | 119 (3) |
C9—C8—H8 | 118.9 (19) | C18—C19—C14 | 120.1 (3) |
C7—C8—H8 | 120.1 (19) | C18—C19—H19 | 121 (2) |
C10—C9—C8 | 119.6 (3) | C14—C19—H19 | 119 (2) |
C10—C9—H9 | 120 (2) | ||
C5—N3—N4—C1 | −0.6 (3) | C2—C1—C7—C12 | 30.2 (5) |
C6—N3—N4—C1 | 177.9 (3) | C12—C7—C8—C9 | −0.7 (4) |
N3—N4—C1—C2 | −0.6 (3) | C1—C7—C8—C9 | −178.7 (3) |
N3—N4—C1—C7 | 175.7 (2) | C7—C8—C9—C10 | −0.5 (4) |
N4—C1—C2—C3 | −173.5 (3) | C8—C9—C10—C11 | 0.8 (5) |
C7—C1—C2—C3 | 10.8 (6) | C8—C9—C10—C13 | −178.9 (3) |
N4—C1—C2—C5 | 1.6 (3) | C9—C10—C11—C12 | 0.2 (5) |
C7—C1—C2—C5 | −174.1 (3) | C13—C10—C11—C12 | 179.8 (3) |
C4—N1—C3—C2 | −4.5 (4) | C10—C11—C12—C7 | −1.5 (5) |
C4—N1—C3—C14 | 172.5 (3) | C8—C7—C12—C11 | 1.7 (4) |
C5—C2—C3—N1 | 8.1 (4) | C1—C7—C12—C11 | 179.7 (3) |
C1—C2—C3—N1 | −177.2 (3) | C11—C10—C13—F3 | 161.7 (3) |
C5—C2—C3—C14 | −168.7 (3) | C9—C10—C13—F3 | −18.7 (4) |
C1—C2—C3—C14 | 5.9 (6) | C11—C10—C13—F2 | 39.8 (4) |
C5—N2—C4—N1 | 5.2 (5) | C9—C10—C13—F2 | −140.6 (3) |
C3—N1—C4—N2 | −2.7 (5) | C11—C10—C13—F1 | −79.9 (4) |
C4—N2—C5—N3 | 179.1 (3) | C9—C10—C13—F1 | 99.7 (4) |
C4—N2—C5—C2 | −0.6 (4) | N1—C3—C14—C15 | 51.8 (4) |
N4—N3—C5—N2 | −178.2 (3) | C2—C3—C14—C15 | −131.3 (3) |
C6—N3—C5—N2 | 3.4 (5) | N1—C3—C14—C19 | −128.0 (3) |
N4—N3—C5—C2 | 1.6 (3) | C2—C3—C14—C19 | 48.9 (4) |
C6—N3—C5—C2 | −176.8 (3) | C19—C14—C15—C16 | −2.7 (5) |
C3—C2—C5—N2 | −5.7 (4) | C3—C14—C15—C16 | 177.5 (3) |
C1—C2—C5—N2 | 177.9 (3) | C14—C15—C16—C17 | 2.7 (5) |
C3—C2—C5—N3 | 174.6 (2) | C15—C16—C17—C18 | −0.7 (5) |
C1—C2—C5—N3 | −1.9 (3) | C16—C17—C18—C19 | −1.3 (5) |
N4—C1—C7—C8 | 32.8 (4) | C17—C18—C19—C14 | 1.3 (5) |
C2—C1—C7—C8 | −151.9 (3) | C15—C14—C19—C18 | 0.7 (5) |
N4—C1—C7—C12 | −145.2 (3) | C3—C14—C19—C18 | −179.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4···N2i | 0.96 (3) | 2.66 (3) | 3.588 (4) | 162 (2) |
C6—H6B···N1ii | 1.01 (4) | 2.64 (3) | 3.346 (4) | 127 (2) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y+1, −z+1. |
Funding information
The support of NSF–MRI grant No.1228232 for the purchase of the diffractometer and Tulane University for support of the Tulane Crystallography Laboratory are gratefully acknowledged.
References
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