organic compounds
A monoclinic modification of (4Z)-1-benzyl-4-(2-oxopropylidene)-2,3,4,5-tetrahydro-1H-1,5-benzodiazepin-2-one
aLaboratoire de Chimie Organique Hétérocyclique, Centre de Recherche des Sciences des médicaments, URAC 21, Pôle de Compétence Pharmacochimie, Av Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco, bUnité de Chimie Moleculaire et Environnement, Faculté des Sciences et, Techniques, Université de Sciences, de Technologie et de Médecine, Nouakchott, Mauritania, and cDepartment of Chemistry, Tulane University, New Orleans, LA 70118, USA
*Correspondence e-mail: sam.mmohamed18@gmail.com
In the title molecule, C19H18N2O2, the orientation of the oxopropylidene substituent is largely determined by an intramolecular N—H⋯O hydrogen bond. In the crystal, C—H⋯O hydrogen bonds form zigzag chains, which are elaborated into sheets lying parallel to (101) by complementary C—H⋯π interactions. Comparisons to the structure of the triclinic modification are made.
Keywords: crystal structure; benzodiazepine; hydrogen bond; π-stacking.
CCDC reference: 1825637
Structure description
Benzodiazepine derivatives are widely used as anticonvulsants, antidepressives, sedatives and analgesics (Schultz et al., 1982; Olkkola et al., 2008). In addition, they are used as medicinal agents in the treatment of central nervous system (CNS) disturbances (Stefancich et al., 1992). They also exhibit antitumor and antineoplastic activities (Werner et al., 1990). As part of our ongoing studies in this area (Sebhaoui et al., 2016, 2017) we now describe the synthesis and of a monoclinic modification of the title compound to complement the known triclinic polymorph (Samba et al., 2016).
The dihedral angle between the mean planes of the C1–C6 and C11–C16 rings is 79.02 (5)°. A puckering analysis of the seven-membered ring gave the parameters Q(2) = 0.866 (1) Å, Q(3) = 0.230 (1) Å, φ(2) = 210.27 (7)° and φ(3) = 311.2 (2)°. The orientation of the oxopropylidene substituent is largely determined by the intramolecular N2—H2A⋯O2 hydrogen bond (Table 1 and Fig. 1). In the crystal, C5—H5⋯O1i and C10—H10A⋯O1i hydrogen bonds form zigzag chains aligned with the a/2 + c/2 diagonal of the ac face (Table 1 and Fig. 2). The chains have the benzyl substituents all protruding from the same side and are joined into sheets lying parallel to (10) by complementary C2—H2⋯π(Cg2)iii interactions (Table 1 and Figs. 2 and 3).
While the various conformational parameters of the title compound are quite similar to those of the two independent molecules in the triclinic modification (Samba et al., 2016; CSD refcode AWUXUN) [e.g. Q(2) = 0.872 (1) Å, Q(3) = 0.208 (1) Å, φ(2) = 206.93 (3)° and φ(3) = 303.3 (4)° for molecule 1, while for molecule 2, the corresponding values are 0.814 (1) Å, 0.199 (1) Å, 207.66 (9)° and 313.3 (4)°, respectively), the crystal packing is distinctly different. In the triclinic form, complementary C—H⋯O hydrogen bonds between centrosymmetrically related pairs of molecule 2 form weak dimers with each member of the pair making a weak C—H⋯O hydrogen bond to a molecule 1. These entities then pack in rows extending parallel to the c-axis direction.
Synthesis and crystallization
(4Z)-4-(2-Oxopropylidene)-1,5-benzodiazepin-2-one (0.01 mol) and potassium carbonate K2CO3 (0.02 mol) were dissolved in DMF, then benzylbromide (0.02 mol) and tetrabutylammonium bromide as a phase-transfer catalyst (0.001 mol) were added. The reaction mixture was stirred at room temperature for 48 h. The residue obtained, after evaporation of solvent, was chromatographed on a silica gel column using a hexane/ethyl acetate 9:1 mixture as The solid obtained was crystallized from dichloromethane solution to afford as colourless blocks. The triclinic modification was crystallized from ethanol solution (Samba et al., 2016).
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2
|
Structural data
CCDC reference: 1825637
https://doi.org/10.1107/S2414314618003267/hb4207sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314618003267/hb4207Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314618003267/hb4207Isup3.cdx
Supporting information file. DOI: https://doi.org/10.1107/S2414314618003267/hb4207Isup4.cml
Data collection: APEX3 (Bruker, 2016); cell
SAINT (Bruker, 2016); data reduction: SAINT (Bruker, 2016); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2016 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C19H18N2O2 | F(000) = 648 |
Mr = 306.35 | Dx = 1.286 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 8.9229 (5) Å | Cell parameters from 9497 reflections |
b = 18.8922 (10) Å | θ = 2.8–29.2° |
c = 9.7147 (5) Å | µ = 0.08 mm−1 |
β = 104.879 (1)° | T = 100 K |
V = 1582.73 (15) Å3 | Block, colourless |
Z = 4 | 0.43 × 0.34 × 0.33 mm |
Bruker SMART APEX CCD diffractometer | 4290 independent reflections |
Radiation source: fine-focus sealed tube | 3840 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
Detector resolution: 8.3333 pixels mm-1 | θmax = 29.2°, θmin = 2.2° |
φ and ω scans | h = −12→12 |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | k = −25→25 |
Tmin = 0.90, Tmax = 0.97 | l = −13→13 |
30264 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: mixed |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0723P)2 + 0.4643P] where P = (Fo2 + 2Fc2)/3 |
4290 reflections | (Δ/σ)max = 0.001 |
269 parameters | Δρmax = 0.45 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
Experimental. The diffraction data were obtained from 3 sets of 400 frames, each of width 0.5° in ω, colllected at φ = 0.00, 90.00 and 180.00° and 2 sets of 800 frames, each of width 0.45° in φ, collected at ω = –30.00 and 210.00°. The scan time was 15 sec/frame. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Independent refinement of the hydrogens attached to C19 led to an unsatisfacory geometry so they were placed in calculated positions and included as riding contributions. Independent refinement of the H atoms attached to C19 led to an unsatisfacory geometry so they were placed in calculated positions and included as riding contributions. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.32106 (9) | 0.28428 (4) | 0.06813 (8) | 0.02234 (17) | |
O2 | 0.18336 (10) | 0.57963 (4) | 0.09910 (9) | 0.02928 (19) | |
N1 | 0.47383 (10) | 0.33296 (4) | 0.27077 (8) | 0.01491 (17) | |
N2 | 0.40185 (10) | 0.48362 (4) | 0.20128 (9) | 0.01720 (17) | |
H2A | 0.3522 (18) | 0.5254 (8) | 0.2131 (15) | 0.029 (4)* | |
C1 | 0.53064 (11) | 0.46141 (5) | 0.30978 (9) | 0.01433 (18) | |
C2 | 0.62092 (12) | 0.51468 (5) | 0.39148 (10) | 0.01812 (19) | |
H2 | 0.5929 (16) | 0.5639 (8) | 0.3687 (15) | 0.024 (3)* | |
C3 | 0.74494 (12) | 0.49803 (5) | 0.50523 (11) | 0.0212 (2) | |
H3 | 0.8050 (17) | 0.5351 (8) | 0.5616 (15) | 0.028 (4)* | |
C4 | 0.78186 (12) | 0.42744 (6) | 0.53783 (11) | 0.0220 (2) | |
H4 | 0.8681 (18) | 0.4154 (8) | 0.6179 (16) | 0.031 (4)* | |
C5 | 0.69518 (12) | 0.37418 (5) | 0.45648 (11) | 0.0189 (2) | |
H5 | 0.7218 (17) | 0.3265 (8) | 0.4788 (16) | 0.027 (3)* | |
C6 | 0.56769 (10) | 0.38998 (5) | 0.34242 (9) | 0.01408 (18) | |
C7 | 0.40872 (11) | 0.33147 (5) | 0.12711 (10) | 0.01607 (19) | |
C8 | 0.44886 (12) | 0.39302 (5) | 0.04263 (10) | 0.0187 (2) | |
H8A | 0.5607 (16) | 0.4023 (7) | 0.0738 (15) | 0.025 (3)* | |
H8B | 0.4211 (16) | 0.3796 (7) | −0.0595 (15) | 0.023 (3)* | |
C9 | 0.36035 (11) | 0.45702 (5) | 0.06729 (10) | 0.0178 (2) | |
C10 | 0.45330 (12) | 0.27023 (5) | 0.35546 (10) | 0.01635 (19) | |
H10A | 0.5572 (16) | 0.2486 (8) | 0.4007 (14) | 0.021 (3)* | |
H10B | 0.3908 (17) | 0.2358 (8) | 0.2861 (15) | 0.025 (3)* | |
C11 | 0.37144 (11) | 0.28643 (5) | 0.46926 (10) | 0.01497 (18) | |
C12 | 0.44441 (14) | 0.27264 (5) | 0.61138 (11) | 0.0233 (2) | |
H12 | 0.5538 (18) | 0.2535 (8) | 0.6382 (16) | 0.034 (4)* | |
C13 | 0.36628 (18) | 0.28330 (6) | 0.71659 (12) | 0.0318 (3) | |
H13 | 0.417 (2) | 0.2742 (10) | 0.8183 (19) | 0.048 (5)* | |
C14 | 0.21624 (17) | 0.30856 (6) | 0.68034 (14) | 0.0338 (3) | |
H14 | 0.163 (2) | 0.3172 (10) | 0.752 (2) | 0.058 (6)* | |
C15 | 0.14262 (14) | 0.32281 (7) | 0.53895 (15) | 0.0318 (3) | |
H15 | 0.041 (2) | 0.3410 (10) | 0.513 (2) | 0.053 (5)* | |
C16 | 0.22028 (12) | 0.31183 (6) | 0.43331 (12) | 0.0224 (2) | |
H16 | 0.1684 (18) | 0.3224 (8) | 0.3322 (17) | 0.033 (4)* | |
C17 | 0.24371 (13) | 0.48605 (6) | −0.03786 (11) | 0.0229 (2) | |
H17 | 0.2218 (18) | 0.4641 (8) | −0.1292 (17) | 0.031 (4)* | |
C18 | 0.15993 (13) | 0.54845 (6) | −0.01710 (12) | 0.0257 (2) | |
C19 | 0.04049 (15) | 0.57702 (7) | −0.14480 (14) | 0.0367 (3) | |
H19A | −0.021533 | 0.613573 | −0.113690 | 0.055* | |
H19B | −0.027467 | 0.538449 | −0.191022 | 0.055* | |
H19C | 0.093060 | 0.597542 | −0.212431 | 0.055* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0274 (4) | 0.0206 (3) | 0.0178 (4) | −0.0092 (3) | 0.0035 (3) | −0.0039 (3) |
O2 | 0.0279 (4) | 0.0269 (4) | 0.0280 (4) | 0.0030 (3) | −0.0019 (3) | 0.0056 (3) |
N1 | 0.0192 (4) | 0.0135 (3) | 0.0120 (4) | −0.0021 (3) | 0.0041 (3) | −0.0009 (3) |
N2 | 0.0186 (4) | 0.0168 (4) | 0.0135 (4) | 0.0007 (3) | −0.0009 (3) | 0.0003 (3) |
C1 | 0.0148 (4) | 0.0155 (4) | 0.0119 (4) | 0.0002 (3) | 0.0019 (3) | −0.0002 (3) |
C2 | 0.0204 (4) | 0.0155 (4) | 0.0169 (4) | −0.0010 (3) | 0.0018 (4) | −0.0021 (3) |
C3 | 0.0202 (5) | 0.0211 (5) | 0.0190 (5) | −0.0016 (4) | −0.0011 (4) | −0.0056 (4) |
C4 | 0.0185 (4) | 0.0242 (5) | 0.0191 (5) | 0.0042 (4) | −0.0026 (4) | −0.0027 (4) |
C5 | 0.0193 (4) | 0.0172 (4) | 0.0185 (4) | 0.0040 (3) | 0.0017 (4) | −0.0006 (3) |
C6 | 0.0154 (4) | 0.0142 (4) | 0.0126 (4) | −0.0005 (3) | 0.0036 (3) | −0.0019 (3) |
C7 | 0.0184 (4) | 0.0170 (4) | 0.0136 (4) | −0.0026 (3) | 0.0056 (3) | −0.0022 (3) |
C8 | 0.0250 (5) | 0.0197 (4) | 0.0122 (4) | −0.0071 (4) | 0.0061 (3) | −0.0011 (3) |
C9 | 0.0203 (4) | 0.0187 (4) | 0.0133 (4) | −0.0072 (3) | 0.0026 (3) | 0.0021 (3) |
C10 | 0.0228 (5) | 0.0120 (4) | 0.0153 (4) | 0.0012 (3) | 0.0069 (3) | 0.0004 (3) |
C11 | 0.0195 (4) | 0.0114 (4) | 0.0147 (4) | −0.0012 (3) | 0.0058 (3) | −0.0001 (3) |
C12 | 0.0347 (6) | 0.0191 (4) | 0.0160 (5) | 0.0062 (4) | 0.0063 (4) | 0.0025 (3) |
C13 | 0.0605 (8) | 0.0210 (5) | 0.0184 (5) | 0.0015 (5) | 0.0183 (5) | 0.0023 (4) |
C14 | 0.0510 (7) | 0.0248 (5) | 0.0378 (7) | −0.0117 (5) | 0.0338 (6) | −0.0077 (5) |
C15 | 0.0218 (5) | 0.0322 (6) | 0.0462 (7) | −0.0062 (4) | 0.0172 (5) | −0.0133 (5) |
C16 | 0.0184 (5) | 0.0241 (5) | 0.0237 (5) | −0.0015 (4) | 0.0035 (4) | −0.0055 (4) |
C17 | 0.0247 (5) | 0.0254 (5) | 0.0150 (5) | −0.0083 (4) | −0.0016 (4) | 0.0052 (4) |
C18 | 0.0217 (5) | 0.0256 (5) | 0.0245 (5) | −0.0069 (4) | −0.0038 (4) | 0.0113 (4) |
C19 | 0.0321 (6) | 0.0351 (6) | 0.0327 (6) | −0.0030 (5) | −0.0102 (5) | 0.0163 (5) |
O1—C7 | 1.2267 (12) | C9—C17 | 1.3716 (14) |
O2—C18 | 1.2425 (15) | C10—C11 | 1.5047 (13) |
N1—C7 | 1.3674 (12) | C10—H10A | 1.005 (14) |
N1—C6 | 1.4309 (11) | C10—H10B | 0.997 (14) |
N1—C10 | 1.4806 (12) | C11—C16 | 1.3891 (14) |
N2—C9 | 1.3552 (12) | C11—C12 | 1.3915 (14) |
N2—C1 | 1.4091 (12) | C12—C13 | 1.3918 (16) |
N2—H2A | 0.927 (16) | C12—H12 | 1.010 (16) |
C1—C2 | 1.4012 (13) | C13—C14 | 1.379 (2) |
C1—C6 | 1.4061 (12) | C13—H13 | 0.990 (18) |
C2—C3 | 1.3844 (14) | C14—C15 | 1.388 (2) |
C2—H2 | 0.973 (14) | C14—H14 | 0.95 (2) |
C3—C4 | 1.3907 (14) | C15—C16 | 1.3934 (16) |
C3—H3 | 0.963 (15) | C15—H15 | 0.941 (19) |
C4—C5 | 1.3861 (14) | C16—H16 | 0.993 (16) |
C4—H4 | 0.971 (15) | C17—C18 | 1.4376 (17) |
C5—C6 | 1.4013 (13) | C17—H17 | 0.954 (16) |
C5—H5 | 0.943 (15) | C18—C19 | 1.5123 (15) |
C7—C8 | 1.5182 (13) | C19—H19A | 0.9800 |
C8—C9 | 1.4968 (14) | C19—H19B | 0.9800 |
C8—H8A | 0.981 (14) | C19—H19C | 0.9800 |
C8—H8B | 0.992 (14) | ||
C7—N1—C6 | 123.66 (8) | N1—C10—C11 | 113.46 (7) |
C7—N1—C10 | 118.03 (8) | N1—C10—H10A | 109.7 (8) |
C6—N1—C10 | 118.22 (7) | C11—C10—H10A | 109.2 (8) |
C9—N2—C1 | 125.27 (9) | N1—C10—H10B | 105.9 (8) |
C9—N2—H2A | 114.4 (9) | C11—C10—H10B | 109.7 (8) |
C1—N2—H2A | 119.0 (9) | H10A—C10—H10B | 108.8 (11) |
C2—C1—C6 | 119.60 (8) | C16—C11—C12 | 119.40 (9) |
C2—C1—N2 | 116.73 (8) | C16—C11—C10 | 120.58 (9) |
C6—C1—N2 | 123.63 (8) | C12—C11—C10 | 119.94 (9) |
C3—C2—C1 | 120.96 (9) | C11—C12—C13 | 120.43 (11) |
C3—C2—H2 | 120.3 (8) | C11—C12—H12 | 119.8 (9) |
C1—C2—H2 | 118.7 (8) | C13—C12—H12 | 119.7 (8) |
C2—C3—C4 | 119.59 (9) | C14—C13—C12 | 119.94 (11) |
C2—C3—H3 | 120.2 (9) | C14—C13—H13 | 118.5 (11) |
C4—C3—H3 | 120.2 (9) | C12—C13—H13 | 121.5 (11) |
C5—C4—C3 | 120.10 (9) | C13—C14—C15 | 120.09 (11) |
C5—C4—H4 | 119.8 (9) | C13—C14—H14 | 120.5 (12) |
C3—C4—H4 | 120.1 (9) | C15—C14—H14 | 119.4 (12) |
C4—C5—C6 | 121.13 (9) | C14—C15—C16 | 120.09 (11) |
C4—C5—H5 | 119.5 (9) | C14—C15—H15 | 120.8 (12) |
C6—C5—H5 | 119.4 (9) | C16—C15—H15 | 119.1 (12) |
C5—C6—C1 | 118.62 (8) | C11—C16—C15 | 120.04 (11) |
C5—C6—N1 | 118.63 (8) | C11—C16—H16 | 119.6 (9) |
C1—C6—N1 | 122.59 (8) | C15—C16—H16 | 120.3 (9) |
O1—C7—N1 | 122.99 (9) | C9—C17—C18 | 123.08 (10) |
O1—C7—C8 | 120.99 (9) | C9—C17—H17 | 117.0 (9) |
N1—C7—C8 | 116.02 (8) | C18—C17—H17 | 119.8 (9) |
C9—C8—C7 | 108.95 (8) | O2—C18—C17 | 122.95 (10) |
C9—C8—H8A | 110.0 (8) | O2—C18—C19 | 119.66 (11) |
C7—C8—H8A | 109.4 (8) | C17—C18—C19 | 117.38 (11) |
C9—C8—H8B | 111.1 (8) | C18—C19—H19A | 109.5 |
C7—C8—H8B | 108.2 (8) | C18—C19—H19B | 109.5 |
H8A—C8—H8B | 109.1 (12) | H19A—C19—H19B | 109.5 |
N2—C9—C17 | 122.35 (10) | C18—C19—H19C | 109.5 |
N2—C9—C8 | 115.34 (8) | H19A—C19—H19C | 109.5 |
C17—C9—C8 | 122.31 (9) | H19B—C19—H19C | 109.5 |
C9—N2—C1—C2 | 136.19 (10) | N1—C7—C8—C9 | −75.07 (11) |
C9—N2—C1—C6 | −46.44 (14) | C1—N2—C9—C17 | −172.77 (9) |
C6—C1—C2—C3 | −0.89 (15) | C1—N2—C9—C8 | 8.21 (13) |
N2—C1—C2—C3 | 176.59 (9) | C7—C8—C9—N2 | 67.29 (11) |
C1—C2—C3—C4 | 0.87 (16) | C7—C8—C9—C17 | −111.73 (10) |
C2—C3—C4—C5 | 0.22 (16) | C7—N1—C10—C11 | −120.24 (9) |
C3—C4—C5—C6 | −1.29 (16) | C6—N1—C10—C11 | 63.16 (11) |
C4—C5—C6—C1 | 1.25 (15) | N1—C10—C11—C16 | 62.23 (12) |
C4—C5—C6—N1 | −174.18 (9) | N1—C10—C11—C12 | −121.00 (10) |
C2—C1—C6—C5 | −0.16 (14) | C16—C11—C12—C13 | 0.79 (15) |
N2—C1—C6—C5 | −177.46 (9) | C10—C11—C12—C13 | −176.02 (9) |
C2—C1—C6—N1 | 175.07 (8) | C11—C12—C13—C14 | −0.83 (17) |
N2—C1—C6—N1 | −2.22 (14) | C12—C13—C14—C15 | 0.53 (18) |
C7—N1—C6—C5 | −142.94 (10) | C13—C14—C15—C16 | −0.19 (18) |
C10—N1—C6—C5 | 33.45 (12) | C12—C11—C16—C15 | −0.45 (15) |
C7—N1—C6—C1 | 41.82 (13) | C10—C11—C16—C15 | 176.34 (9) |
C10—N1—C6—C1 | −141.79 (9) | C14—C15—C16—C11 | 0.15 (17) |
C6—N1—C7—O1 | −175.57 (9) | N2—C9—C17—C18 | 2.56 (16) |
C10—N1—C7—O1 | 8.03 (14) | C8—C9—C17—C18 | −178.49 (9) |
C6—N1—C7—C8 | 3.42 (13) | C9—C17—C18—O2 | −2.38 (17) |
C10—N1—C7—C8 | −172.98 (8) | C9—C17—C18—C19 | 176.56 (10) |
O1—C7—C8—C9 | 103.94 (10) |
Cg2 is the centroid of the C11–C16 benzene ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O2 | 0.927 (16) | 1.921 (15) | 2.6613 (11) | 135.4 (12) |
C5—H5···O1i | 0.943 (15) | 2.350 (15) | 3.2823 (12) | 170.0 (13) |
C10—H10A···O1i | 1.005 (14) | 2.571 (14) | 3.5518 (12) | 165.2 (11) |
C2—H2···Cg2ii | 0.973 (14) | 2.81 (2) | 3.625 (1) | 142 (1) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+1, −y+1, −z+1. |
Acknowledgements
JTM thanks Tulane University for support of the Tulane Crystallography Laboratory.
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