organic compounds
Dimethyl (7-hydroxy-4-methyl-2-oxo-2H-chromen-3-yl)phosphonate
aCollege of Chemistry and Chemical engineering, Henan University of Technology, Zhengzhou 450001, People's Republic of China
*Correspondence e-mail: lryang@haut.edu.cn
In the title compound, C12H13O6P, the coumarin ring system is essentially planar [dihedral angle between the rings = 1.32 (16)°] and the methoxy groups and double-bonded O atom of the phosphonate group are disordered over two sets of sites [occupancy ratio 0.537 (2):0.463 (2)]. In the crystal, C—H⋯O hydrogen bonds involving the disordered phosphonate O atom as acceptor occur, which generate [100] chains. Weak C—H⋯O and aromatic π–π stacking interactions [minimum centroid–centroid separation = 3.713 (2) Å] are also observed.
Keywords: crystal structure; 3-phosphorated coumarin; hydrogen bonding.
CCDC reference: 1565652
Structure description
Several 3-phosphorated et al., 2003) and the selective synthesis of phosphorated has been a quite active topic (Yuan et al., 2015; Mi et al., 2013). Our group has investigated the phosphorylation of catalysed by chelating N-heterocyclic palladium complexes and obtained 3-phosphorated selectively (Yang et al., 2016). The structure of one of these products, viz.: the title compound, was characterized unambiguously by single-crystal X-ray diffraction studies.
have been proved to exhibit cytotoxicity on some human leukemia cell lines as well as having high alkylating activity (BudziszAs shown in Fig. 1, the coumarin ring system is essentially planar [dihedral angle between the rings = 1.32 (16)°]. The methoxyl groups and the double-bonded oxygen atom of the phosphonate group show disorder, with the major and minor components of the disorder having an occupancy factor of 0.537 (2) and 0.463 (2), respectively. In the crystal, O—H⋯O hydrogen bonds (Table 1) involving the disordered phosphonate group are observed, which generate [100] chains. Weak C—H⋯O and aromatic π-π stacking interactions [minimum centroid–centroid separation = 3.713 (2) Å] are also observed.
Synthesis and crystallization
The synthesis of the title compound is based on our reported literature procedure (Yang et al., 2016). A Schlenk tube charged with 7-hydroxy-4-methyl coumarin (0.5 mmol, 88 mg), dimethyl phosphite (1.0 mmol, 110 mg), NHC palladium complex (0.05 mmol), AgNO3 (1.0 mmol, 170 mg) and CH3CN (2 ml) was heated at 80°C for 10 h. The mixture was then cooled, filtered and the filtrate was evaporated. Purification of the residue by (silica, petroleum ether/ethyl acetate = 2/11/4, v/v) produced the pure products. Recrystallization of the product from CH2Cl2/diethyl ether (1/1, v/v) solution afforded the title compound as colourless prisms.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2Structural data
CCDC reference: 1565652
https://doi.org/10.1107/S2414314617011191/hb4160sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314617011191/hb4160Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314617011191/hb4160Isup3.cdx
Supporting information file. DOI: https://doi.org/10.1107/S2414314617011191/hb4160Isup4.cml
Data collection: CrysAlis PRO (Rigaku OD, 2015); cell
CrysAlis PRO (Rigaku OD, 2015); data reduction: CrysAlis PRO (Rigaku OD, 2015); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).C12H13O6P | F(000) = 592 |
Mr = 284.19 | Dx = 1.500 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 9.9684 (7) Å | Cell parameters from 1046 reflections |
b = 7.8695 (6) Å | θ = 3.8–25.4° |
c = 16.6927 (10) Å | µ = 0.24 mm−1 |
β = 106.097 (7)° | T = 293 K |
V = 1258.13 (16) Å3 | Prism, colourless |
Z = 4 | 0.25 × 0.12 × 0.1 mm |
Agilent Xcalibur Eos diffractometer | 2572 independent reflections |
Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source | 1364 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
Detector resolution: 16.2312 pixels mm-1 | θmax = 26.4°, θmin = 2.1° |
ω scans | h = −12→11 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku Oxford Diffraction, 2015) | k = −6→9 |
Tmin = 0.007, Tmax = 1.000 | l = −20→20 |
5507 measured reflections |
Refinement on F2 | 26 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.058 | H-atom parameters constrained |
wR(F2) = 0.173 | w = 1/[σ2(Fo2) + (0.0763P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max < 0.001 |
2572 reflections | Δρmax = 0.30 e Å−3 |
194 parameters | Δρmin = −0.28 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Aromatic H atoms were placed geometrically and refined as riding, with C—H = 0.93–0.97 Å, and with Uiso(H) = 1.2 Ueq(C). The H atoms associated to hydroxyl and methyl groups were refined as rotating groups, with Uiso(H) = 1.5 Ueq(C). The O5A—C11A and O6A—C12A bonds were refined with restrained distances of 1.55 (2) Å. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.4062 (3) | 0.3873 (5) | 0.6581 (2) | 0.0552 (10) | |
C2 | 0.2791 (3) | 0.3234 (4) | 0.6012 (2) | 0.0468 (8) | |
C3 | 0.2797 (3) | 0.2579 (5) | 0.5251 (2) | 0.0486 (9) | |
C4 | 0.4104 (3) | 0.2502 (4) | 0.5029 (2) | 0.0451 (8) | |
C5 | 0.5316 (3) | 0.3061 (4) | 0.56004 (19) | 0.0450 (8) | |
C6 | 0.6615 (3) | 0.3005 (5) | 0.5456 (2) | 0.0547 (10) | |
H6 | 0.7404 | 0.3383 | 0.5858 | 0.066* | |
C7 | 0.6715 (4) | 0.2381 (5) | 0.4706 (2) | 0.0552 (10) | |
C8 | 0.5532 (4) | 0.1831 (5) | 0.4109 (2) | 0.0617 (10) | |
H8 | 0.5604 | 0.1421 | 0.3600 | 0.074* | |
C9 | 0.4261 (4) | 0.1891 (5) | 0.4269 (2) | 0.0562 (10) | |
H9 | 0.3476 | 0.1516 | 0.3862 | 0.067* | |
C10 | 0.1510 (3) | 0.1924 (6) | 0.4629 (2) | 0.0725 (12) | |
H10A | 0.0967 | 0.2863 | 0.4345 | 0.109* | |
H10B | 0.0965 | 0.1275 | 0.4912 | 0.109* | |
H10C | 0.1774 | 0.1213 | 0.4230 | 0.109* | |
C11 | 0.209 (3) | 0.077 (3) | 0.733 (2) | 0.086 (5) | 0.537 (2) |
H11A | 0.1408 | 0.0093 | 0.6941 | 0.129* | 0.537 (2) |
H11B | 0.2170 | 0.0382 | 0.7888 | 0.129* | 0.537 (2) |
H11C | 0.2979 | 0.0652 | 0.7215 | 0.129* | 0.537 (2) |
C11A | 0.209 (4) | 0.036 (4) | 0.723 (2) | 0.086 (5) | 0.463 (2) |
H11D | 0.2358 | −0.0589 | 0.6947 | 0.129* | 0.463 (2) |
H11E | 0.1707 | −0.0036 | 0.7660 | 0.129* | 0.463 (2) |
H11F | 0.2893 | 0.1057 | 0.7466 | 0.129* | 0.463 (2) |
C12 | 0.151 (5) | 0.598 (2) | 0.738 (2) | 0.085 (3) | 0.537 (2) |
H12A | 0.2501 | 0.6123 | 0.7468 | 0.127* | 0.537 (2) |
H12B | 0.1341 | 0.5309 | 0.7816 | 0.127* | 0.537 (2) |
H12C | 0.1082 | 0.7076 | 0.7366 | 0.127* | 0.537 (2) |
C12A | 0.153 (6) | 0.609 (3) | 0.727 (3) | 0.085 (3) | 0.463 (2) |
H12D | 0.1767 | 0.6525 | 0.6793 | 0.127* | 0.463 (2) |
H12E | 0.2202 | 0.6479 | 0.7770 | 0.127* | 0.463 (2) |
H12F | 0.0618 | 0.6493 | 0.7272 | 0.127* | 0.463 (2) |
O1 | 0.4182 (3) | 0.4547 (4) | 0.72427 (15) | 0.0756 (9) | |
O2 | 0.5290 (2) | 0.3705 (3) | 0.63588 (13) | 0.0581 (7) | |
O3 | 0.7946 (3) | 0.2292 (4) | 0.45079 (16) | 0.0806 (9) | |
H3 | 0.8580 | 0.2619 | 0.4905 | 0.121* | |
O4 | 0.0015 (5) | 0.2510 (8) | 0.5818 (3) | 0.0693 (13) | 0.537 (2) |
O4A | 0.0032 (6) | 0.3910 (9) | 0.5761 (4) | 0.0693 (13) | 0.463 (2) |
O5 | 0.1688 (5) | 0.2446 (7) | 0.7256 (3) | 0.0615 (10) | 0.537 (2) |
O5A | 0.1013 (5) | 0.1394 (7) | 0.6613 (3) | 0.0615 (10) | 0.463 (2) |
O6 | 0.0938 (5) | 0.5143 (6) | 0.6592 (3) | 0.0679 (11) | 0.537 (2) |
O6A | 0.1527 (6) | 0.4150 (8) | 0.7252 (3) | 0.0679 (11) | 0.463 (2) |
P1 | 0.12560 (9) | 0.32787 (13) | 0.63845 (6) | 0.0535 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0398 (19) | 0.077 (3) | 0.052 (2) | 0.0053 (19) | 0.0172 (17) | 0.003 (2) |
C2 | 0.0335 (16) | 0.054 (2) | 0.0544 (19) | 0.0022 (16) | 0.0142 (15) | 0.0028 (18) |
C3 | 0.0357 (18) | 0.050 (2) | 0.059 (2) | 0.0072 (16) | 0.0105 (16) | 0.0102 (18) |
C4 | 0.0351 (17) | 0.051 (2) | 0.0491 (19) | 0.0040 (16) | 0.0114 (15) | 0.0039 (16) |
C5 | 0.0386 (18) | 0.052 (2) | 0.0452 (18) | 0.0016 (16) | 0.0134 (15) | 0.0002 (16) |
C6 | 0.0325 (17) | 0.076 (3) | 0.055 (2) | −0.0001 (17) | 0.0104 (16) | 0.0016 (19) |
C7 | 0.0388 (19) | 0.076 (3) | 0.054 (2) | 0.0070 (19) | 0.0188 (17) | 0.0088 (19) |
C8 | 0.052 (2) | 0.081 (3) | 0.055 (2) | 0.009 (2) | 0.0203 (19) | −0.002 (2) |
C9 | 0.0441 (19) | 0.074 (3) | 0.0492 (19) | 0.0051 (19) | 0.0100 (16) | −0.0008 (18) |
C10 | 0.038 (2) | 0.106 (4) | 0.070 (2) | −0.003 (2) | 0.0088 (18) | −0.015 (2) |
C11 | 0.106 (4) | 0.060 (11) | 0.104 (5) | 0.016 (7) | 0.048 (5) | 0.017 (7) |
C11A | 0.106 (4) | 0.060 (11) | 0.104 (5) | 0.016 (7) | 0.048 (5) | 0.017 (7) |
C12 | 0.081 (4) | 0.076 (4) | 0.102 (8) | 0.012 (3) | 0.035 (5) | −0.012 (3) |
C12A | 0.081 (4) | 0.076 (4) | 0.102 (8) | 0.012 (3) | 0.035 (5) | −0.012 (3) |
O1 | 0.0553 (15) | 0.117 (3) | 0.0575 (15) | −0.0005 (16) | 0.0202 (13) | −0.0220 (16) |
O2 | 0.0334 (12) | 0.088 (2) | 0.0542 (14) | −0.0038 (12) | 0.0136 (11) | −0.0117 (13) |
O3 | 0.0454 (15) | 0.130 (3) | 0.0747 (17) | 0.0084 (18) | 0.0302 (14) | 0.0004 (18) |
O4 | 0.0325 (15) | 0.106 (4) | 0.069 (2) | −0.003 (3) | 0.0146 (15) | −0.004 (3) |
O4A | 0.0325 (15) | 0.106 (4) | 0.069 (2) | −0.003 (3) | 0.0146 (15) | −0.004 (3) |
O5 | 0.059 (2) | 0.064 (3) | 0.069 (2) | 0.0066 (19) | 0.030 (2) | 0.0139 (18) |
O5A | 0.059 (2) | 0.064 (3) | 0.069 (2) | 0.0066 (19) | 0.030 (2) | 0.0139 (18) |
O6 | 0.069 (3) | 0.067 (3) | 0.076 (3) | 0.018 (2) | 0.033 (2) | 0.008 (2) |
O6A | 0.069 (3) | 0.067 (3) | 0.076 (3) | 0.018 (2) | 0.033 (2) | 0.008 (2) |
P1 | 0.0368 (5) | 0.0680 (7) | 0.0595 (6) | 0.0055 (5) | 0.0196 (4) | 0.0059 (5) |
C1—C2 | 1.446 (5) | C11—H11B | 0.9600 |
C1—O1 | 1.200 (4) | C11—H11C | 0.9600 |
C1—O2 | 1.381 (4) | C11—O5 | 1.38 (2) |
C2—C3 | 1.373 (4) | C11A—H11D | 0.9600 |
C2—P1 | 1.805 (3) | C11A—H11E | 0.9600 |
C3—C4 | 1.451 (4) | C11A—H11F | 0.9600 |
C3—C10 | 1.501 (5) | C11A—O5A | 1.499 (19) |
C4—C5 | 1.387 (4) | C12—H12A | 0.9600 |
C4—C9 | 1.405 (4) | C12—H12B | 0.9600 |
C5—C6 | 1.382 (4) | C12—H12C | 0.9600 |
C5—O2 | 1.370 (4) | C12—O6 | 1.43 (4) |
C6—H6 | 0.9300 | C12A—H12D | 0.9600 |
C6—C7 | 1.374 (5) | C12A—H12E | 0.9600 |
C7—C8 | 1.385 (5) | C12A—H12F | 0.9600 |
C7—O3 | 1.358 (4) | C12A—O6A | 1.529 (19) |
C8—H8 | 0.9300 | O3—H3 | 0.8200 |
C8—C9 | 1.366 (4) | O4—P1 | 1.464 (5) |
C9—H9 | 0.9300 | O4A—P1 | 1.454 (6) |
C10—H10A | 0.9600 | O5—P1 | 1.543 (4) |
C10—H10B | 0.9600 | O5A—P1 | 1.567 (5) |
C10—H10C | 0.9600 | O6—P1 | 1.561 (5) |
C11—H11A | 0.9600 | O6A—P1 | 1.556 (6) |
O1—C1—C2 | 127.1 (3) | O5—C11—H11C | 109.5 |
O1—C1—O2 | 114.8 (3) | H11D—C11A—H11E | 109.5 |
O2—C1—C2 | 118.0 (3) | H11D—C11A—H11F | 109.5 |
C1—C2—P1 | 116.0 (2) | H11E—C11A—H11F | 109.5 |
C3—C2—C1 | 120.7 (3) | O5A—C11A—H11D | 109.5 |
C3—C2—P1 | 123.2 (3) | O5A—C11A—H11E | 109.5 |
C2—C3—C4 | 119.1 (3) | O5A—C11A—H11F | 109.5 |
C2—C3—C10 | 123.2 (3) | H12A—C12—H12B | 109.5 |
C4—C3—C10 | 117.7 (3) | H12A—C12—H12C | 109.5 |
C5—C4—C3 | 118.9 (3) | H12B—C12—H12C | 109.5 |
C5—C4—C9 | 115.9 (3) | O6—C12—H12A | 109.5 |
C9—C4—C3 | 125.2 (3) | O6—C12—H12B | 109.5 |
C6—C5—C4 | 123.3 (3) | O6—C12—H12C | 109.5 |
O2—C5—C4 | 121.1 (3) | H12D—C12A—H12E | 109.5 |
O2—C5—C6 | 115.5 (3) | H12D—C12A—H12F | 109.5 |
C5—C6—H6 | 120.7 | H12E—C12A—H12F | 109.5 |
C7—C6—C5 | 118.6 (3) | O6A—C12A—H12D | 109.5 |
C7—C6—H6 | 120.7 | O6A—C12A—H12E | 109.5 |
C6—C7—C8 | 120.3 (3) | O6A—C12A—H12F | 109.5 |
O3—C7—C6 | 122.6 (3) | C5—O2—C1 | 121.9 (3) |
O3—C7—C8 | 117.1 (3) | C7—O3—H3 | 109.5 |
C7—C8—H8 | 120.0 | C11—O5—P1 | 119.4 (15) |
C9—C8—C7 | 120.0 (3) | C11A—O5A—P1 | 123.3 (17) |
C9—C8—H8 | 120.0 | C12—O6—P1 | 125.5 (12) |
C4—C9—H9 | 119.0 | C12A—O6A—P1 | 117.5 (19) |
C8—C9—C4 | 121.9 (3) | O4—P1—C2 | 114.5 (2) |
C8—C9—H9 | 119.0 | O4—P1—O5 | 113.5 (3) |
C3—C10—H10A | 109.5 | O4—P1—O6 | 110.2 (3) |
C3—C10—H10B | 109.5 | O4A—P1—C2 | 112.6 (2) |
C3—C10—H10C | 109.5 | O4A—P1—O5A | 110.0 (3) |
H10A—C10—H10B | 109.5 | O4A—P1—O6A | 114.2 (3) |
H10A—C10—H10C | 109.5 | O5—P1—C2 | 105.91 (19) |
H10B—C10—H10C | 109.5 | O5—P1—O6 | 102.1 (3) |
H11A—C11—H11B | 109.5 | O5A—P1—C2 | 105.6 (2) |
H11A—C11—H11C | 109.5 | O6—P1—C2 | 109.8 (2) |
H11B—C11—H11C | 109.5 | O6A—P1—C2 | 112.6 (2) |
O5—C11—H11A | 109.5 | O6A—P1—O5A | 100.9 (3) |
O5—C11—H11B | 109.5 | ||
C1—C2—C3—C4 | 1.3 (5) | C7—C8—C9—C4 | 0.0 (6) |
C1—C2—C3—C10 | −179.0 (3) | C9—C4—C5—C6 | −1.2 (5) |
C1—C2—P1—O4 | −175.7 (4) | C9—C4—C5—O2 | 179.1 (3) |
C1—C2—P1—O4A | 135.4 (4) | C10—C3—C4—C5 | −178.5 (3) |
C1—C2—P1—O5 | −49.9 (4) | C10—C3—C4—C9 | 1.3 (5) |
C1—C2—P1—O5A | −104.6 (3) | C11—O5—P1—C2 | −63.3 (18) |
C1—C2—P1—O6 | 59.7 (3) | C11—O5—P1—O4 | 63.1 (18) |
C1—C2—P1—O6A | 4.6 (4) | C11—O5—P1—O6 | −178.3 (18) |
C2—C1—O2—C5 | 4.3 (5) | C11A—O5A—P1—C2 | 57 (2) |
C2—C3—C4—C5 | 1.3 (5) | C11A—O5A—P1—O4A | 179 (2) |
C2—C3—C4—C9 | −178.9 (3) | C11A—O5A—P1—O6A | −60 (2) |
C3—C2—P1—O4 | 1.8 (4) | C12—O6—P1—C2 | −87 (2) |
C3—C2—P1—O4A | −47.0 (4) | C12—O6—P1—O4 | 146 (2) |
C3—C2—P1—O5 | 127.6 (3) | C12—O6—P1—O5 | 25 (2) |
C3—C2—P1—O5A | 73.0 (4) | C12A—O6A—P1—C2 | 80 (2) |
C3—C2—P1—O6 | −122.8 (3) | C12A—O6A—P1—O4A | −50 (2) |
C3—C2—P1—O6A | −177.9 (3) | C12A—O6A—P1—O5A | −168 (2) |
C3—C4—C5—C6 | 178.6 (3) | O1—C1—C2—C3 | 176.1 (4) |
C3—C4—C5—O2 | −1.1 (5) | O1—C1—C2—P1 | −6.3 (5) |
C3—C4—C9—C8 | −178.9 (4) | O1—C1—O2—C5 | −175.8 (3) |
C4—C5—C6—C7 | 0.6 (6) | O2—C1—C2—C3 | −4.1 (5) |
C4—C5—O2—C1 | −1.8 (5) | O2—C1—C2—P1 | 173.5 (2) |
C5—C4—C9—C8 | 0.9 (5) | O2—C5—C6—C7 | −179.7 (3) |
C5—C6—C7—C8 | 0.4 (6) | O3—C7—C8—C9 | −179.9 (4) |
C5—C6—C7—O3 | 179.5 (3) | P1—C2—C3—C4 | −176.1 (2) |
C6—C5—O2—C1 | 178.5 (3) | P1—C2—C3—C10 | 3.6 (5) |
C6—C7—C8—C9 | −0.7 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O4i | 0.82 | 1.78 | 2.562 (6) | 159 |
O3—H3···O4Ai | 0.82 | 2.01 | 2.812 (7) | 168 |
C8—H8···O1ii | 0.93 | 2.44 | 3.220 (4) | 142 |
C10—H10B···O4 | 0.96 | 2.22 | 2.831 (6) | 121 |
C12—H12A···O1 | 0.96 | 2.20 | 2.96 (5) | 135 |
Symmetry codes: (i) x+1, y, z; (ii) x, −y+1/2, z−1/2. |
Acknowledgements
The authors thank Ms Y. Zhu for technical assistance.
Funding information
Funding for this research was provided by: National Natural Science Foundation of China (grant No. 21172055); Foundation of Henan Education Committee (grant No. 18A150004); the Program for Innovative Research Team from Zhengzhou (grant No. 131PCXTD605); Natural Science Foundation of Henan University of Technology (grant No. 2017RCJH08).
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