organic compounds
3-(4-Chlorophenyl)-4-phenylthiosydnone
aDepartment of Chemistry, Wright State University, Dayton, Ohio 45435, USA
*Correspondence e-mail: david.grossie@wright.edu
In the structure of C14H9ClN2O2S [systematic name: 3-(4-chlorophenyl)-4-(phenylsulfanyl)-1,2,3λ5-oxadiazol-3-ylium-5-olate], the central sydnone ring is inclined at angles of 67.49 (10)° to the phenyl ring of the thiophenyl substituent and 52.61 (10)° to the chlorophenyl ring. The compound crystallizes utilizing a network of weak S and Cl-based hydrogen bonds, together with S⋯π, O⋯π and C—H⋯π interactions, forming a three-dimensional structure. In spite of having three planar rings, no π–π interactions are found.
Keywords: crystal structure; sydnone; hydrogen bonds; X—π interactions X = O; S.
CCDC reference: 1508848
Structure description
The title compound was prepared as part of a project exploring the lithiation chemistry of substituted arylsydnones with the expectation that improved avenues to otherwise difficultly accessible et al., 2007; Turnbull & Krein, 1997; Turnbull et al., 1998). The sydnone and phenyl rings in the title molecule, Fig. 1, are each planar with a maximum r.m.s. deviation of less than 0.01 Å found for all three rings. None of the three rings are coplanar with each other nor are they in close face-to-face proximity. Relative to the sydnone ring, the phenyl ring of the thiophenyl substituent is inclined at an angle of 67.49 (10)° while the sydnone and chlorophenyl rings are rotated by 52.61 (10)° to one another.
would result (Grossie,In the crystal, no classical hydrogen bonds are found; however, non-classical hydrogen bonds are present involving sulfur and chlorine as the hydrogen-bond acceptor and carbon as the hydrogen-bond donor. A C—H⋯π hydrogen bond is also found, Table 1. In addition there are S⋯π and O⋯π, contacts, Fig. 2, with distance and angle data detailed in Table 2 and 3. Molecules are also linked into sets of three, on one side by C—H⋯Cl hydrogen bonds and on the other by O⋯π interactions. These trimers are interconnected by a C32—H32⋯S1 hydrogen bond forming a chain of molecules approximately along the bc diagonal, Fig. 3. Overall these contacts combine to generate an extensive three-dimensional network.
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Synthesis and crystallization
The title compound was prepared from 3-(4-chlorophenyl)sydnone by treatment with n-BuLi (1.7 equivalents) at −40°C followed by addition of diphenyl disulfide (1.1 equivalents). on silica gel using dichloromethane as and subsequent recrystallization from dichloromethane solution afforded the product as colorless needles in 57% yield (Dossa, 2006).
Refinement
Crystal data, data collection and structure .
details are summarized in Table 4
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Structural data
CCDC reference: 1508848
https://doi.org/10.1107/S2414314616015868/sj4059sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314616015868/sj4059Isup2.hkl
Data collection: APEX2 (Bruker, 2014); cell
APEX2 (Bruker, 2014); data reduction: SAINT (Bruker, 2014); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009), PLATON (Spek, 2009) and Mercury (Macrae et al., 2008)'.C14H9ClN2O2S | Dx = 1.487 Mg m−3 |
Mr = 304.74 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 7304 reflections |
a = 12.5782 (11) Å | θ = 2.4–23.9° |
b = 9.7406 (9) Å | µ = 0.44 mm−1 |
c = 22.2168 (19) Å | T = 173 K |
V = 2722.0 (4) Å3 | Block, yellow |
Z = 8 | 0.7 × 0.7 × 0.6 mm |
F(000) = 1248 |
Bruker Smart X2S diffractometer | 2413 reflections with I > 2σ(I) |
Radiation source: Incoatec Microfocus Source | Rint = 0.048 |
ω scans | θmax = 27.0°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | h = −16→15 |
Tmin = 0.904, Tmax = 1.000 | k = −11→12 |
33900 measured reflections | l = −28→28 |
2973 independent reflections |
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.038 | H-atom parameters constrained |
wR(F2) = 0.091 | w = 1/[σ2(Fo2) + (0.033P)2 + 1.677P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
2973 reflections | Δρmax = 0.38 e Å−3 |
181 parameters | Δρmin = −0.47 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane) Ring 1 7.261 (10) x + 7.749 (6) y + -4.09 (2) z = 4.563 (9) * 0.007 (2) O(1) * -0.003 (2) N(2) * -0.003 (2) N(3) * 0.007 (2) C(4) * -0.008 (2) C(5) Ring 2 0.671 (11) x + -6.051 (6) y + 17.371 (11) z = 4.516 (8) * -0.005 (2) C(31) * -0.002 (2) C(32) * 0.007 (2) C(33) * -0.006 (2) C(34) * 0.000 (2) C(35) * 0.006 (2) C(36) Ring 3 -6.513 (9) x + 8.333 (4) y + -0.141 (19) z = -3.552 (12) * -0.008 (2) C(41) * 0.000 (2) C(42) * 0.007 (2) C(43) * -0.006 (2) C(44) * -0.003 (2) C(45) * 0.010 (2) C(46) Ring Ring Angle 1 2 52.61 (10) 1 3 67.49 (10) 2 3 55.67 (10) |
x | y | z | Uiso*/Ueq | ||
S1 | 0.70839 (4) | 0.11292 (5) | 0.39942 (2) | 0.03326 (13) | |
Cl1 | 0.28185 (5) | 0.54265 (6) | 0.43739 (4) | 0.0711 (2) | |
O1 | 0.64891 (13) | 0.10104 (17) | 0.22602 (6) | 0.0549 (4) | |
N3 | 0.58757 (12) | 0.19843 (16) | 0.30413 (6) | 0.0346 (3) | |
O5 | 0.79114 (13) | −0.01484 (17) | 0.26453 (6) | 0.0563 (4) | |
N2 | 0.56899 (15) | 0.18549 (19) | 0.24655 (8) | 0.0509 (5) | |
C31 | 0.51284 (15) | 0.28083 (19) | 0.33771 (8) | 0.0349 (4) | |
C4 | 0.67396 (15) | 0.12955 (18) | 0.32453 (8) | 0.0325 (4) | |
C41 | 0.82162 (15) | 0.22185 (18) | 0.40756 (8) | 0.0324 (4) | |
C5 | 0.71701 (17) | 0.0605 (2) | 0.27391 (8) | 0.0422 (5) | |
C32 | 0.55037 (16) | 0.38634 (19) | 0.37319 (9) | 0.0390 (4) | |
H32 | 0.6229 | 0.4035 | 0.3762 | 0.047* | |
C46 | 0.85093 (17) | 0.2479 (2) | 0.46683 (9) | 0.0433 (5) | |
H46 | 0.8082 | 0.2174 | 0.4983 | 0.052* | |
C36 | 0.40563 (15) | 0.2517 (2) | 0.33229 (9) | 0.0427 (5) | |
H36 | 0.3824 | 0.1791 | 0.3085 | 0.051* | |
C42 | 0.88276 (15) | 0.2698 (2) | 0.36062 (9) | 0.0408 (4) | |
H42 | 0.8627 | 0.2534 | 0.3210 | 0.049* | |
C34 | 0.37116 (16) | 0.4392 (2) | 0.39826 (10) | 0.0447 (5) | |
C33 | 0.47785 (17) | 0.4662 (2) | 0.40430 (9) | 0.0447 (5) | |
H33 | 0.5010 | 0.5372 | 0.4290 | 0.054* | |
C35 | 0.33365 (16) | 0.3330 (2) | 0.36306 (10) | 0.0478 (5) | |
H35 | 0.2610 | 0.3163 | 0.3601 | 0.057* | |
C43 | 0.97527 (17) | 0.3432 (2) | 0.37342 (11) | 0.0537 (6) | |
H43 | 1.0170 | 0.3769 | 0.3422 | 0.064* | |
C44 | 1.00502 (18) | 0.3659 (2) | 0.43267 (13) | 0.0599 (7) | |
H44 | 1.0674 | 0.4134 | 0.4410 | 0.072* | |
C45 | 0.9434 (2) | 0.3189 (2) | 0.47894 (11) | 0.0568 (6) | |
H45 | 0.9638 | 0.3348 | 0.5186 | 0.068* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0378 (3) | 0.0360 (2) | 0.0261 (2) | −0.00063 (19) | −0.00220 (18) | 0.00344 (18) |
Cl1 | 0.0543 (4) | 0.0476 (3) | 0.1115 (5) | 0.0168 (3) | 0.0348 (3) | 0.0146 (3) |
O1 | 0.0634 (10) | 0.0715 (11) | 0.0299 (7) | 0.0099 (8) | −0.0076 (6) | −0.0115 (7) |
N3 | 0.0378 (9) | 0.0376 (8) | 0.0283 (7) | −0.0029 (7) | −0.0045 (6) | 0.0009 (6) |
O5 | 0.0579 (10) | 0.0635 (10) | 0.0476 (9) | 0.0153 (8) | 0.0020 (7) | −0.0154 (8) |
N2 | 0.0561 (11) | 0.0646 (12) | 0.0319 (8) | 0.0078 (9) | −0.0108 (8) | −0.0033 (8) |
C31 | 0.0343 (10) | 0.0358 (10) | 0.0345 (9) | 0.0007 (8) | −0.0003 (7) | 0.0078 (8) |
C4 | 0.0345 (10) | 0.0343 (9) | 0.0288 (8) | 0.0002 (8) | −0.0026 (7) | −0.0001 (7) |
C41 | 0.0346 (9) | 0.0278 (9) | 0.0349 (9) | 0.0067 (7) | −0.0034 (7) | −0.0040 (7) |
C5 | 0.0474 (12) | 0.0477 (11) | 0.0315 (9) | −0.0012 (10) | −0.0035 (8) | −0.0051 (8) |
C32 | 0.0335 (10) | 0.0353 (10) | 0.0482 (11) | −0.0051 (8) | 0.0052 (8) | 0.0025 (8) |
C46 | 0.0562 (13) | 0.0364 (10) | 0.0374 (10) | 0.0060 (10) | −0.0103 (9) | −0.0066 (8) |
C36 | 0.0357 (11) | 0.0458 (11) | 0.0464 (11) | −0.0044 (9) | −0.0083 (9) | 0.0088 (9) |
C42 | 0.0412 (11) | 0.0377 (10) | 0.0435 (10) | 0.0002 (9) | 0.0055 (9) | −0.0103 (9) |
C34 | 0.0379 (11) | 0.0353 (10) | 0.0610 (13) | 0.0077 (9) | 0.0142 (9) | 0.0187 (10) |
C33 | 0.0447 (12) | 0.0323 (10) | 0.0570 (12) | −0.0033 (9) | 0.0127 (10) | 0.0022 (9) |
C35 | 0.0287 (10) | 0.0526 (13) | 0.0623 (13) | −0.0004 (9) | −0.0012 (9) | 0.0196 (11) |
C43 | 0.0427 (12) | 0.0421 (12) | 0.0763 (16) | −0.0027 (10) | 0.0171 (11) | −0.0167 (11) |
C44 | 0.0400 (12) | 0.0426 (12) | 0.0972 (19) | 0.0029 (10) | −0.0145 (13) | −0.0307 (13) |
C45 | 0.0610 (15) | 0.0480 (13) | 0.0615 (14) | 0.0078 (11) | −0.0218 (12) | −0.0191 (11) |
S1—C4 | 1.7268 (17) | C46—H46 | 0.9300 |
S1—C41 | 1.7852 (19) | C46—C45 | 1.380 (3) |
Cl1—C34 | 1.742 (2) | C36—H36 | 0.9300 |
O1—N2 | 1.377 (2) | C36—C35 | 1.383 (3) |
O1—C5 | 1.422 (2) | C42—H42 | 0.9300 |
N3—N2 | 1.307 (2) | C42—C43 | 1.395 (3) |
N3—C31 | 1.444 (2) | C34—C33 | 1.374 (3) |
N3—C4 | 1.355 (2) | C34—C35 | 1.380 (3) |
O5—C5 | 1.205 (2) | C33—H33 | 0.9300 |
C31—C32 | 1.379 (3) | C35—H35 | 0.9300 |
C31—C36 | 1.383 (3) | C43—H43 | 0.9300 |
C4—C5 | 1.418 (3) | C43—C44 | 1.386 (3) |
C41—C46 | 1.391 (2) | C44—H44 | 0.9300 |
C41—C42 | 1.377 (3) | C44—C45 | 1.366 (4) |
C32—H32 | 0.9300 | C45—H45 | 0.9300 |
C32—C33 | 1.384 (3) | ||
C4—S1—C41 | 104.00 (9) | C31—C36—H36 | 120.7 |
N2—O1—C5 | 110.98 (14) | C31—C36—C35 | 118.5 (2) |
N2—N3—C31 | 116.30 (15) | C35—C36—H36 | 120.7 |
N2—N3—C4 | 115.04 (16) | C41—C42—H42 | 120.5 |
C4—N3—C31 | 128.65 (14) | C41—C42—C43 | 119.01 (19) |
N3—N2—O1 | 104.56 (15) | C43—C42—H42 | 120.5 |
C32—C31—N3 | 119.14 (16) | C33—C34—Cl1 | 118.05 (18) |
C32—C31—C36 | 122.44 (19) | C33—C34—C35 | 122.20 (19) |
C36—C31—N3 | 118.42 (17) | C35—C34—Cl1 | 119.75 (16) |
N3—C4—S1 | 124.74 (13) | C32—C33—H33 | 120.4 |
N3—C4—C5 | 106.01 (15) | C34—C33—C32 | 119.2 (2) |
C5—C4—S1 | 128.61 (15) | C34—C33—H33 | 120.4 |
C46—C41—S1 | 114.58 (15) | C36—C35—H35 | 120.5 |
C42—C41—S1 | 124.76 (14) | C34—C35—C36 | 119.03 (19) |
C42—C41—C46 | 120.47 (19) | C34—C35—H35 | 120.5 |
O5—C5—O1 | 120.41 (17) | C42—C43—H43 | 120.0 |
O5—C5—C4 | 136.19 (19) | C44—C43—C42 | 120.0 (2) |
C4—C5—O1 | 103.40 (17) | C44—C43—H43 | 120.0 |
C31—C32—H32 | 120.7 | C43—C44—H44 | 119.7 |
C31—C32—C33 | 118.61 (18) | C45—C44—C43 | 120.5 (2) |
C33—C32—H32 | 120.7 | C45—C44—H44 | 119.7 |
C41—C46—H46 | 120.0 | C46—C45—H45 | 120.0 |
C45—C46—C41 | 120.0 (2) | C44—C45—C46 | 120.0 (2) |
C45—C46—H46 | 120.0 | C44—C45—H45 | 120.0 |
S1—C4—C5—O1 | 172.40 (14) | C31—C36—C35—C34 | −0.5 (3) |
S1—C4—C5—O5 | −8.6 (4) | C4—S1—C41—C46 | 167.36 (14) |
S1—C41—C46—C45 | 173.35 (16) | C4—S1—C41—C42 | −17.73 (18) |
S1—C41—C42—C43 | −173.76 (15) | C4—N3—N2—O1 | 0.0 (2) |
Cl1—C34—C33—C32 | −179.33 (15) | C4—N3—C31—C32 | 54.0 (3) |
Cl1—C34—C35—C36 | −179.97 (15) | C4—N3—C31—C36 | −126.9 (2) |
N3—C31—C32—C33 | 178.85 (17) | C41—S1—C4—N3 | −107.63 (16) |
N3—C31—C36—C35 | −178.18 (16) | C41—S1—C4—C5 | 82.94 (19) |
N3—C4—C5—O1 | 1.4 (2) | C41—C46—C45—C44 | 1.3 (3) |
N3—C4—C5—O5 | −179.5 (2) | C41—C42—C43—C44 | 0.6 (3) |
N2—O1—C5—O5 | 179.30 (19) | C5—O1—N2—N3 | 0.9 (2) |
N2—O1—C5—C4 | −1.5 (2) | C32—C31—C36—C35 | 0.9 (3) |
N2—N3—C31—C32 | −127.57 (19) | C46—C41—C42—C43 | 0.9 (3) |
N2—N3—C31—C36 | 51.6 (2) | C36—C31—C32—C33 | −0.2 (3) |
N2—N3—C4—S1 | −172.41 (15) | C42—C41—C46—C45 | −1.8 (3) |
N2—N3—C4—C5 | −1.0 (2) | C42—C43—C44—C45 | −1.1 (3) |
C31—N3—N2—O1 | −178.59 (15) | C33—C34—C35—C36 | −0.7 (3) |
C31—N3—C4—S1 | 6.0 (3) | C35—C34—C33—C32 | 1.4 (3) |
C31—N3—C4—C5 | 177.46 (17) | C43—C44—C45—C46 | 0.2 (3) |
C31—C32—C33—C34 | −0.9 (3) |
Cg1 is the centroid of the C41–C46 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C46—H46···Cl1i | 0.93 | 2.96 | 3.388 (2) | 109 |
C32—H32···S1ii | 0.93 | 2.99 | 3.797 (2) | 146 |
C33—H33···Cg1iii | 0.93 | 2.74 | 3.498 (2) | 140 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+3/2, y+1/2, z; (iii) x+1, −y−3/2, z−1/2. |
Gamma is the angle between the Cg–H vector and the normal to the ring. Cg2 is the centroid of the O1/N2/N3/C4/C5 ring. |
Y—X···Cg | X···Cg | X-Perp | Gamma | Y—X···Cg |
C5—O5···Cg2ii | 3.529 (2) | 3.261 | 22.45 | 140.29 (14) |
Symmetry code: (ii) -x + 3/2, y + 1/2, z. |
Cg1 and Cg3 are the centroids of the C41–C46 and C31–C36 rings, respectively. |
X···Cg | X···Cg | Y—X···Cg | X-Perp | Gamma |
S1···Cg1 | 3.487 (2) | 95.73 | 3.447 | 8.69 |
O1···Cg3 | 3.349 (3) | 118.55 | 3.188 | 17.84 |
Symmetry codes: (iii) -x + 3/2, y - 1/2, z; (iv) -x + 1, y- 1/2, -z + 1/2. |
References
Bruker (2014). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Dossa, A. (2006). MSc thesis, Wright State University, USA. Google Scholar
Grossie, D. A., Sun, L. & Turnbull, K. (2007). Acta Cryst. E63, o2042–o2043. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Turnbull, K. & Krein, D. M. (1997). Tetrahedron Lett. 38, 1165–1168. CrossRef CAS Web of Science Google Scholar
Turnbull, K., Sun, C. & Krein, D. M. (1998). Tetrahedron Lett. 39, 1509–1512. Web of Science CrossRef CAS Google Scholar
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