organic compounds
Ethyl 1-benzyl-2-(3-chlorophenyl)-1H-benzimidazole-5-carboxylate
aPURSE Lab, Mangalagangotri, Mangalore University, Mangaluru 574 199, India, bDepartment of Physics, Bharathi Composite PU College, Bharthi Nagara, Mandya 571 422, India, cDepartment of Chemistry, Mangalore University, Mangaluru 574 199, India, dPG Department of Chemistry, SDM College (Autonomous), Ujire, India 574 240, India, eDepartment of Material Science, Mangalore University, Mangaluru 574 199, India, and fDepartment of Physics, Faculty of Science, An Najah National, University, Nabtus, West Bank, Palestinian Territories
*Correspondence e-mail: muneer@najah.edu
In the title compound, C23H19ClN2O2, the dihedral angles between the imidazole ring system and the chlorobenzene and phenyl rings are 48.05 (14) and 82.53 (15)°, respectively. In the crystal, inversion dimers linked by pairs of C—H⋯O hydrogen bonds generate R22(22) loops. Weak C—H⋯π and π–π stacking interactions are also observed.
Keywords: crystal structure; benzimidazole-5-carboxylate.
CCDC reference: 1431411
Structure description
As part of our research on the synthesis and crystal structures of 1,2-disubstituted benzimidazole-5-carboxylates, we report here the crystal and molecular structure of ethyl 1-benzyl-2-(3-chlorophenyl)-1H-benzimidazole-5-carboxylate, (I). The molecular structure of (I) is shown in Fig. 1 and the dihedral angle between the chlorobenzene (C11–C16) and phenyl (C1–C6) rings is 74.06 (18)°.
In the crystal (Fig. 2), molecules are linked into inversion dimers through pairs of C1—H1⋯O2 hydrogen bonds, forming an (22) loop (Table 1) and a weak C—H⋯π bond is observed. Aromatic π–π stacking, with a centroid–centroid distance of 3.866 (2) Å [Cg1⋯Cg2, where Cg1 and Cg2(−x + 2, y + , −z + ) are the centroids of rings N1/C8/C9/N2/C10 and C1–C6, respectively], also occurs.
Synthesis and crystallization
Sodium dithionite (3.0 equivalents) was added to a stirred solution of ethyl 4-benzylamino-3-nitrobenzoate (0.01 mol, 1.0 equivalent) and 3-chlorobenzaldehyde (0.01 mol, 1.0 equivalent) in DMSO (20 ml). The reaction mixture was stirred at 363 K for 3 h. After completion of the reaction (monitored by TLC; hexane–ethyl acetate 7:3 v/v), it was poured onto crushed ice. The solid separated was filtered off, washed with water and dried. The product was recrystallized from N,N-dimethyformamide solution to yield colourless blocks.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2Structural data
CCDC reference: 1431411
https://doi.org/10.1107/S2414314616010683/hb4064sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314616010683/hb4064Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314616010683/hb4064Isup3.cml
Data collection: CrystalClear SM Expert (Rigaku, 2011); cell
CrystalClear SM Expert (Rigaku, 2011); data reduction: CrystalClear SM Expert (Rigaku, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).C23H19ClN2O2 | F(000) = 816 |
Mr = 390.85 | Dx = 1.288 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71075 Å |
a = 11.145 (3) Å | Cell parameters from 4498 reflections |
b = 9.878 (2) Å | θ = 3.0–27.5° |
c = 18.355 (4) Å | µ = 0.21 mm−1 |
β = 93.952 (7)° | T = 296 K |
V = 2015.9 (8) Å3 | Block, colourless |
Z = 4 | 0.32 × 0.26 × 0.21 mm |
Rigaku Saturn724+ diffractometer | Rint = 0.048 |
profile data from ω–scans | θmax = 27.5°, θmin = 3.0° |
Absorption correction: multi-scan (NUMABS; Rigaku 1999) | h = −14→14 |
Tmin = 0.935, Tmax = 0.957 | k = −12→12 |
14125 measured reflections | l = −23→23 |
4498 independent reflections | 4498 standard reflections |
2287 reflections with I > 2σ(I) |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.078 | H-atom parameters constrained |
wR(F2) = 0.185 | w = 1/[σ2(Fo2) + (0.0581P)2 + 1.0114P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
4498 reflections | Δρmax = 0.22 e Å−3 |
254 parameters | Δρmin = −0.29 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.51971 (9) | 0.95208 (12) | 0.21673 (7) | 0.1007 (4) | |
O1 | 1.3420 (2) | 0.3900 (3) | 0.50007 (13) | 0.0834 (8) | |
N1 | 0.9704 (2) | 0.7556 (3) | 0.32335 (13) | 0.0537 (6) | |
C6 | 0.8897 (3) | 0.6538 (3) | 0.20635 (16) | 0.0509 (8) | |
C9 | 1.0335 (3) | 0.7003 (3) | 0.43583 (16) | 0.0534 (8) | |
C8 | 1.0530 (3) | 0.6769 (3) | 0.36265 (16) | 0.0520 (8) | |
N2 | 0.9413 (2) | 0.7933 (3) | 0.44078 (15) | 0.0626 (7) | |
C17 | 1.1037 (3) | 0.6343 (3) | 0.48961 (17) | 0.0595 (8) | |
H17 | 1.0919 | 0.6482 | 0.5387 | 0.071* | |
C18 | 1.1919 (3) | 0.5472 (3) | 0.46873 (17) | 0.0562 (8) | |
C7 | 0.9609 (3) | 0.7653 (3) | 0.24414 (16) | 0.0585 (8) | |
H7A | 1.0413 | 0.7652 | 0.2270 | 0.070* | |
H7B | 0.9238 | 0.8512 | 0.2303 | 0.070* | |
C16 | 0.7209 (3) | 0.8924 (3) | 0.30033 (18) | 0.0627 (9) | |
H16 | 0.7198 | 0.8098 | 0.2760 | 0.075* | |
C21 | 1.2678 (3) | 0.4790 (4) | 0.5267 (2) | 0.0688 (10) | |
C11 | 0.8119 (3) | 0.9214 (3) | 0.35294 (18) | 0.0582 (8) | |
C20 | 1.1417 (3) | 0.5909 (3) | 0.34119 (17) | 0.0586 (8) | |
H20 | 1.1541 | 0.5770 | 0.2922 | 0.070* | |
C5 | 0.8807 (3) | 0.6533 (4) | 0.13092 (18) | 0.0727 (10) | |
H5 | 0.9178 | 0.7216 | 0.1058 | 0.087* | |
O2 | 1.2644 (3) | 0.5004 (3) | 0.59070 (15) | 0.1004 (10) | |
C10 | 0.9073 (3) | 0.8236 (3) | 0.37328 (18) | 0.0555 (8) | |
C19 | 1.2099 (3) | 0.5275 (3) | 0.39501 (18) | 0.0611 (9) | |
H19 | 1.2705 | 0.4691 | 0.3823 | 0.073* | |
C1 | 0.8341 (3) | 0.5539 (3) | 0.24296 (18) | 0.0608 (9) | |
H1 | 0.8386 | 0.5532 | 0.2937 | 0.073* | |
C12 | 0.8114 (3) | 1.0456 (3) | 0.3880 (2) | 0.0725 (10) | |
H12 | 0.8721 | 1.0665 | 0.4236 | 0.087* | |
C14 | 0.6328 (4) | 1.1091 (4) | 0.3193 (2) | 0.0830 (12) | |
H14 | 0.5727 | 1.1725 | 0.3079 | 0.100* | |
C2 | 0.7709 (3) | 0.4538 (4) | 0.2039 (2) | 0.0799 (11) | |
H2 | 0.7324 | 0.3858 | 0.2284 | 0.096* | |
C15 | 0.6316 (3) | 0.9865 (4) | 0.2840 (2) | 0.0687 (10) | |
C3 | 0.7650 (4) | 0.4553 (5) | 0.1288 (3) | 0.0900 (13) | |
H3 | 0.7239 | 0.3871 | 0.1026 | 0.108* | |
C4 | 0.8189 (4) | 0.5554 (5) | 0.0930 (2) | 0.0959 (14) | |
H4 | 0.8135 | 0.5570 | 0.0422 | 0.115* | |
C13 | 0.7226 (4) | 1.1370 (4) | 0.3709 (2) | 0.0867 (12) | |
H13 | 0.7235 | 1.2200 | 0.3949 | 0.104* | |
C22 | 1.4205 (4) | 0.3153 (5) | 0.5511 (2) | 0.1122 (16) | |
H22A | 1.4797 | 0.3756 | 0.5750 | 0.135* | |
H22B | 1.3745 | 0.2742 | 0.5882 | 0.135* | |
C23 | 1.4792 (6) | 0.2127 (7) | 0.5113 (4) | 0.184 (3) | |
H23A | 1.5219 | 0.2542 | 0.4735 | 0.276* | |
H23B | 1.4202 | 0.1511 | 0.4899 | 0.276* | |
H23C | 1.5348 | 0.1642 | 0.5439 | 0.276* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0690 (6) | 0.1118 (9) | 0.1198 (10) | −0.0021 (6) | −0.0056 (6) | 0.0058 (7) |
O1 | 0.0883 (18) | 0.0881 (18) | 0.0733 (17) | 0.0306 (15) | 0.0018 (14) | 0.0091 (14) |
N1 | 0.0645 (16) | 0.0493 (15) | 0.0478 (15) | 0.0035 (13) | 0.0081 (13) | −0.0047 (12) |
C6 | 0.0536 (17) | 0.055 (2) | 0.0442 (18) | 0.0093 (15) | 0.0078 (14) | 0.0019 (15) |
C9 | 0.0639 (19) | 0.0501 (19) | 0.0470 (19) | −0.0026 (16) | 0.0088 (15) | −0.0090 (15) |
C8 | 0.0611 (19) | 0.0429 (18) | 0.0520 (19) | 0.0000 (15) | 0.0041 (15) | −0.0054 (15) |
N2 | 0.0725 (18) | 0.0609 (18) | 0.0551 (18) | 0.0096 (14) | 0.0101 (14) | −0.0090 (14) |
C17 | 0.068 (2) | 0.066 (2) | 0.0446 (18) | −0.0028 (18) | 0.0066 (16) | −0.0067 (16) |
C18 | 0.0587 (19) | 0.057 (2) | 0.053 (2) | −0.0003 (16) | 0.0030 (15) | −0.0002 (16) |
C7 | 0.067 (2) | 0.059 (2) | 0.0499 (19) | 0.0057 (17) | 0.0119 (16) | 0.0058 (16) |
C16 | 0.066 (2) | 0.053 (2) | 0.071 (2) | −0.0004 (17) | 0.0182 (18) | −0.0003 (17) |
C21 | 0.075 (2) | 0.070 (2) | 0.061 (2) | −0.002 (2) | 0.004 (2) | 0.0052 (19) |
C11 | 0.065 (2) | 0.050 (2) | 0.061 (2) | 0.0029 (16) | 0.0153 (17) | −0.0004 (16) |
C20 | 0.072 (2) | 0.057 (2) | 0.0472 (19) | 0.0066 (17) | 0.0067 (16) | −0.0095 (16) |
C5 | 0.082 (2) | 0.088 (3) | 0.049 (2) | 0.003 (2) | 0.0085 (18) | 0.005 (2) |
O2 | 0.118 (2) | 0.128 (3) | 0.0543 (17) | 0.0326 (19) | −0.0011 (15) | 0.0054 (16) |
C10 | 0.066 (2) | 0.0480 (19) | 0.054 (2) | 0.0010 (16) | 0.0112 (16) | −0.0060 (16) |
C19 | 0.068 (2) | 0.057 (2) | 0.059 (2) | 0.0052 (17) | 0.0108 (17) | −0.0074 (17) |
C1 | 0.068 (2) | 0.062 (2) | 0.0523 (19) | 0.0029 (18) | 0.0063 (16) | 0.0027 (17) |
C12 | 0.078 (2) | 0.059 (2) | 0.081 (3) | 0.0066 (19) | 0.011 (2) | −0.008 (2) |
C14 | 0.079 (3) | 0.065 (3) | 0.107 (3) | 0.022 (2) | 0.017 (2) | 0.007 (2) |
C2 | 0.069 (2) | 0.070 (3) | 0.101 (3) | −0.002 (2) | 0.011 (2) | −0.001 (2) |
C15 | 0.058 (2) | 0.071 (3) | 0.079 (2) | −0.0002 (18) | 0.0146 (18) | 0.009 (2) |
C3 | 0.078 (3) | 0.103 (4) | 0.086 (3) | 0.005 (2) | −0.021 (2) | −0.032 (3) |
C4 | 0.106 (3) | 0.123 (4) | 0.057 (3) | −0.005 (3) | −0.007 (2) | −0.014 (3) |
C13 | 0.089 (3) | 0.064 (3) | 0.107 (3) | 0.017 (2) | 0.003 (3) | −0.017 (2) |
C22 | 0.119 (4) | 0.121 (4) | 0.095 (3) | 0.039 (3) | −0.010 (3) | 0.027 (3) |
C23 | 0.165 (6) | 0.183 (6) | 0.194 (7) | 0.103 (5) | −0.066 (5) | −0.041 (5) |
Cl1—C15 | 1.728 (4) | C11—C12 | 1.386 (4) |
O1—C21 | 1.324 (4) | C20—H20 | 0.9300 |
O1—C22 | 1.440 (4) | C20—C19 | 1.357 (4) |
N1—C8 | 1.372 (4) | C5—H5 | 0.9300 |
N1—C7 | 1.454 (4) | C5—C4 | 1.352 (5) |
N1—C10 | 1.369 (4) | C19—H19 | 0.9300 |
C6—C7 | 1.499 (4) | C1—H1 | 0.9300 |
C6—C5 | 1.381 (4) | C1—C2 | 1.385 (5) |
C6—C1 | 1.367 (4) | C12—H12 | 0.9300 |
C9—C8 | 1.395 (4) | C12—C13 | 1.360 (5) |
C9—N2 | 1.387 (4) | C14—H14 | 0.9300 |
C9—C17 | 1.380 (4) | C14—C15 | 1.373 (5) |
C8—C20 | 1.381 (4) | C14—C13 | 1.359 (5) |
N2—C10 | 1.305 (4) | C2—H2 | 0.9300 |
C17—H17 | 0.9300 | C2—C3 | 1.375 (5) |
C17—C18 | 1.380 (4) | C3—H3 | 0.9300 |
C18—C21 | 1.475 (5) | C3—C4 | 1.351 (6) |
C18—C19 | 1.395 (4) | C4—H4 | 0.9300 |
C7—H7A | 0.9700 | C13—H13 | 0.9300 |
C7—H7B | 0.9700 | C22—H22A | 0.9700 |
C16—H16 | 0.9300 | C22—H22B | 0.9700 |
C16—C11 | 1.381 (4) | C22—C23 | 1.433 (7) |
C16—C15 | 1.379 (5) | C23—H23A | 0.9600 |
C21—O2 | 1.197 (4) | C23—H23B | 0.9600 |
C11—C10 | 1.465 (4) | C23—H23C | 0.9600 |
C21—O1—C22 | 117.9 (3) | N2—C10—N1 | 113.2 (3) |
C8—N1—C7 | 124.3 (3) | N2—C10—C11 | 123.4 (3) |
C10—N1—C8 | 106.5 (3) | C18—C19—H19 | 119.0 |
C10—N1—C7 | 129.2 (3) | C20—C19—C18 | 122.1 (3) |
C5—C6—C7 | 117.8 (3) | C20—C19—H19 | 119.0 |
C1—C6—C7 | 123.1 (3) | C6—C1—H1 | 120.2 |
C1—C6—C5 | 119.1 (3) | C6—C1—C2 | 119.5 (3) |
N2—C9—C8 | 109.8 (3) | C2—C1—H1 | 120.2 |
C17—C9—C8 | 119.5 (3) | C11—C12—H12 | 119.8 |
C17—C9—N2 | 130.7 (3) | C13—C12—C11 | 120.5 (4) |
N1—C8—C9 | 105.6 (3) | C13—C12—H12 | 119.8 |
N1—C8—C20 | 131.8 (3) | C15—C14—H14 | 120.3 |
C20—C8—C9 | 122.6 (3) | C13—C14—H14 | 120.3 |
C10—N2—C9 | 104.9 (2) | C13—C14—C15 | 119.4 (4) |
C9—C17—H17 | 120.8 | C1—C2—H2 | 120.0 |
C9—C17—C18 | 118.4 (3) | C3—C2—C1 | 119.9 (4) |
C18—C17—H17 | 120.8 | C3—C2—H2 | 120.0 |
C17—C18—C21 | 117.9 (3) | C16—C15—Cl1 | 119.8 (3) |
C17—C18—C19 | 120.6 (3) | C14—C15—Cl1 | 119.6 (3) |
C19—C18—C21 | 121.5 (3) | C14—C15—C16 | 120.6 (4) |
N1—C7—C6 | 114.5 (3) | C2—C3—H3 | 119.9 |
N1—C7—H7A | 108.6 | C4—C3—C2 | 120.2 (4) |
N1—C7—H7B | 108.6 | C4—C3—H3 | 119.9 |
C6—C7—H7A | 108.6 | C5—C4—H4 | 120.0 |
C6—C7—H7B | 108.6 | C3—C4—C5 | 120.1 (4) |
H7A—C7—H7B | 107.6 | C3—C4—H4 | 120.0 |
C11—C16—H16 | 120.1 | C12—C13—H13 | 119.5 |
C15—C16—H16 | 120.1 | C14—C13—C12 | 121.0 (4) |
C15—C16—C11 | 119.8 (3) | C14—C13—H13 | 119.5 |
O1—C21—C18 | 112.3 (3) | O1—C22—H22A | 110.1 |
O2—C21—O1 | 122.8 (3) | O1—C22—H22B | 110.1 |
O2—C21—C18 | 124.9 (4) | H22A—C22—H22B | 108.4 |
C16—C11—C10 | 121.8 (3) | C23—C22—O1 | 108.0 (4) |
C16—C11—C12 | 118.8 (3) | C23—C22—H22A | 110.1 |
C12—C11—C10 | 119.4 (3) | C23—C22—H22B | 110.1 |
C8—C20—H20 | 121.6 | C22—C23—H23A | 109.5 |
C19—C20—C8 | 116.9 (3) | C22—C23—H23B | 109.5 |
C19—C20—H20 | 121.6 | C22—C23—H23C | 109.5 |
C6—C5—H5 | 119.4 | H23A—C23—H23B | 109.5 |
C4—C5—C6 | 121.2 (4) | H23A—C23—H23C | 109.5 |
C4—C5—H5 | 119.4 | H23B—C23—H23C | 109.5 |
N1—C10—C11 | 123.4 (3) | ||
N1—C8—C20—C19 | 179.6 (3) | C16—C11—C10—N1 | 48.3 (5) |
C6—C5—C4—C3 | −0.3 (6) | C16—C11—C10—N2 | −132.2 (3) |
C6—C1—C2—C3 | 0.3 (5) | C16—C11—C12—C13 | 0.0 (5) |
C9—C8—C20—C19 | 0.7 (5) | C21—O1—C22—C23 | 171.8 (5) |
C9—N2—C10—N1 | 0.6 (4) | C21—C18—C19—C20 | −179.2 (3) |
C9—N2—C10—C11 | −178.9 (3) | C11—C16—C15—Cl1 | 178.5 (2) |
C9—C17—C18—C21 | 179.0 (3) | C11—C16—C15—C14 | 0.4 (5) |
C9—C17—C18—C19 | 0.5 (5) | C11—C12—C13—C14 | 0.0 (6) |
C8—N1—C7—C6 | 83.0 (4) | C5—C6—C7—N1 | −177.5 (3) |
C8—N1—C10—N2 | −1.1 (4) | C5—C6—C1—C2 | 0.6 (5) |
C8—N1—C10—C11 | 178.5 (3) | C10—N1—C8—C9 | 1.0 (3) |
C8—C9—N2—C10 | 0.1 (3) | C10—N1—C8—C20 | −178.0 (3) |
C8—C9—C17—C18 | 0.3 (5) | C10—N1—C7—C6 | −100.5 (4) |
C8—C20—C19—C18 | 0.2 (5) | C10—C11—C12—C13 | −178.9 (3) |
N2—C9—C8—N1 | −0.7 (3) | C19—C18—C21—O1 | −6.7 (5) |
N2—C9—C8—C20 | 178.4 (3) | C19—C18—C21—O2 | 173.0 (4) |
N2—C9—C17—C18 | −178.9 (3) | C1—C6—C7—N1 | 2.5 (4) |
C17—C9—C8—N1 | 179.9 (3) | C1—C6—C5—C4 | −0.6 (5) |
C17—C9—C8—C20 | −0.9 (5) | C1—C2—C3—C4 | −1.2 (6) |
C17—C9—N2—C10 | 179.4 (3) | C12—C11—C10—N1 | −132.8 (3) |
C17—C18—C21—O1 | 174.8 (3) | C12—C11—C10—N2 | 46.6 (5) |
C17—C18—C21—O2 | −5.5 (5) | C2—C3—C4—C5 | 1.2 (7) |
C17—C18—C19—C20 | −0.7 (5) | C15—C16—C11—C10 | 178.6 (3) |
C7—N1—C8—C9 | 178.2 (3) | C15—C16—C11—C12 | −0.3 (5) |
C7—N1—C8—C20 | −0.9 (5) | C15—C14—C13—C12 | 0.2 (6) |
C7—N1—C10—N2 | −178.0 (3) | C13—C14—C15—Cl1 | −178.4 (3) |
C7—N1—C10—C11 | 1.5 (5) | C13—C14—C15—C16 | −0.4 (6) |
C7—C6—C5—C4 | 179.4 (3) | C22—O1—C21—C18 | −179.5 (3) |
C7—C6—C1—C2 | −179.5 (3) | C22—O1—C21—O2 | 0.8 (6) |
Cg4 is the centroid of the C11–C16 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O2i | 0.93 | 2.54 | 3.358 (4) | 148 |
C20—H20···Cg4ii | 0.93 | 2.87 | 3.757 (4) | 159 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+2, y−1/2, −z+1/2. |
Acknowledgements
The Authors thank DST–PURSE, Mangalore University, Mangaluru, for providing the single-crystal X-ray diffraction facility.
References
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