organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2414-3146

(4E)-1-Decyl-4-(2-oxo­propyl­­idene)-2,3,4,5-tetra­hydro-1H-1,5-benzodiazepin-2-one

CROSSMARK_Color_square_no_text.svg

aHeterocyclic Organic Chemistry Laboratory URAC 21, Faculty of Sciences, Mohammed V University in Rabat, Av. Ibn Battouta, BP 1014 Rabat, Morocco, and bDepartment of Chemistry, Tulane University, New Orleans, LA 70118, USA
*Correspondence e-mail: sebhaoui.jihad@gmail.com

Edited by S. Bernès, Benemérita Universidad Autónoma de Puebla, México (Received 18 June 2016; accepted 19 July 2016; online 22 July 2016)

The title compound, C22H32N2O2, forms bilayers with the n-decyl chains in extended conformation oriented towards the inter­ior of the bilayer structure. Weak C—H⋯O inter­actions help to stabilize the exterior surfaces. The conformation of the seven-membered ring has been analysed.

3D view (loading...)
[Scheme 3D1]
Chemical scheme
[Scheme 1]

Structure description

1,5-Benzodiazepine derivatives constitute an important class of nitro­gen-containing heterocycles and possess inter­esting activities as anti­convulsant (Ben-Cherif et al., 2010[Ben-Cherif, W., Gharbi, R., Sebai, H., Dridi, D., Boughattas, N. A. & Ben-Attia, M. (2010). C. R. Biol. 333, 214-219.]), anti­microbial (Wang et al., 2015[Wang, L.-Z., Li, X.-Q. & An, Y.-S. (2015). Org. Biomol. Chem. 13, 5497-5509.]), and anti-inflammatory (Ha et al., 2010[Ha, S. K., Shobha, D., Moon, E., Chari, M. A., Mukkanti, K., Kim, S.-H., Ahn, K.-H. & Kim, S. Y. (2010). Bioorg. Med. Chem. Lett. 20, 3969-3971.]) agents. They have also been used as inter­mediates for the synthesis of benzimidazoles (El Azzaoui et al., 1999[El Azzaoui, B., Fifani, J., Tjiou, E. M., Essassi, E. M., Jaud, J., Lopez, L. & Bellan, J. (1999). Tetrahedron Lett. 40, 4677-4680.]) and quinoxalines (Doumbia et al., 2008[Doumbia, M. L., Bouhfid, R., Ahabchane, N. H. & Essassi, E. M. (2008). Arkivoc, xiii, 36-44.]).

In the crystal, the title compound adopts a U-shaped conformation (Fig. 1[link]). A puckering analysis of the conformation of the seven-membered ring yielded the parameters q2 = 0.888 (1) Å, φ2 = 32.74 (8)°, q3 = 0.203 (1) Å and φ3 = 127.5 (4)°. An intra­molecular N2—H2A⋯O2 hydrogen bond (Table 1[link]) occurs.

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2A⋯O2 0.887 (16) 1.904 (16) 2.6459 (14) 140.0 (14)
C5—H5⋯O2i 0.93 2.54 3.3123 (17) 140
Symmetry code: (i) x+1, y-1, z.
[Figure 1]
Figure 1
The title mol­ecule with 30% probability ellipsoids for non-H atoms. The dashed line represents an intra­molecular hydrogen bond (Table 1[link], entry 1).

In the crystal, the mol­ecules pack to form bilayers with the n-decyl chains extended to fill the inter­ior, and with the substituted benzodiazepine units on the surfaces (Fig. 2[link]). Weak C5—H5⋯O2i contacts [symmetry code (i): x + 1, y − 1, z] help to stabilize the hydro­philic portion (Table 1[link] and Fig. 2[link]).

[Figure 2]
Figure 2
Packing structure viewed along the a axis, with C—H⋯O inter­actions shown as dashed lines. For clarity only the H atoms involved in these interactions are included.

Synthesis and crystallization

To a solution of (4E)-2-oxo­propyl­idene-1,5-benzodiazepin-2-one (0.01 mol, 2.16 g) in N,N-di­methyl­formamide (60 ml), was added K2CO3 (0.02 mol, 2.76 g), 1-bromo­decane (0.02 mol, 4.42 g) and tetra-n-butyl­ammonium bromide (0.001 mol, 0.321 g). The reaction mixture was stirred at room temperature for 48 h. The solution was filtered and the solvent was removed under reduced pressure. The obtained residue was chromatographed on a silica-gel column using a mixture of hexane and ethyl acetate (80/20) as eluent, to afford the title compound as colourless crystals.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link].

Table 2
Experimental details

Crystal data
Chemical formula C22H32N2O2
Mr 356.49
Crystal system, space group Triclinic, P[\overline{1}]
Temperature (K) 296
a, b, c (Å) 8.4132 (14), 8.4870 (14), 16.670 (3)
α, β, γ (°) 83.560 (2), 85.919 (2), 62.599 (2)
V3) 1049.8 (3)
Z 2
Radiation type Mo Kα
μ (mm−1) 0.07
Crystal size (mm) 0.44 × 0.32 × 0.26
 
Data collection
Diffractometer Bruker SMART APEX CCD
Absorption correction Multi-scan (SADABS; Bruker, 2016[Bruker (2016). APEX3, SADABS and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.])
Tmin, Tmax 0.85, 0.98
No. of measured, independent and observed [I > 2σ(I)] reflections 20426, 5575, 3821
Rint 0.029
(sin θ/λ)max−1) 0.685
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.047, 0.136, 1.04
No. of reflections 5575
No. of parameters 241
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.23, −0.15
Computer programs: APEX3 and SAINT (Bruker, 2016[Bruker (2016). APEX3, SADABS and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]), SHELXT (Sheldrick, 2015a[Sheldrick, G. M. (2015a). Acta Cryst. A71, 3-8.]), SHELXL2014 (Sheldrick, 2015b[Sheldrick, G. M. (2015b). Acta Cryst. C71, 3-8.]), DIAMOND (Brandenburg & Putz, 2012[Brandenburg, K. & Putz, H. (2012). DIAMOND. Crystal Impact GbR, Bonn, Germany.]) and SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]).

Structural data


Computing details top

Data collection: APEX3 (Bruker, 2016); cell refinement: SAINT (Bruker, 2016); data reduction: SAINT (Bruker, 2016); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

(4E)-1-Decyl-4-(2-oxopropylidene)-2,3,4,5-tetrahydro-1H-1,5-benzodiazepin-2-one top
Crystal data top
C22H32N2O2Z = 2
Mr = 356.49F(000) = 388
Triclinic, P1Dx = 1.128 Mg m3
a = 8.4132 (14) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.4870 (14) ÅCell parameters from 7410 reflections
c = 16.670 (3) Åθ = 2.5–28.9°
α = 83.560 (2)°µ = 0.07 mm1
β = 85.919 (2)°T = 296 K
γ = 62.599 (2)°Block, colourless
V = 1049.8 (3) Å30.44 × 0.32 × 0.26 mm
Data collection top
Bruker SMART APEX CCD
diffractometer
5575 independent reflections
Radiation source: fine-focus sealed tube3821 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 8.3333 pixels mm-1θmax = 29.2°, θmin = 2.5°
φ and ω scansh = 1111
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
k = 1111
Tmin = 0.85, Tmax = 0.98l = 2222
20426 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: mixed
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.0569P)2 + 0.119P]
where P = (Fo2 + 2Fc2)/3
5575 reflections(Δ/σ)max = 0.001
241 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = 0.15 e Å3
Special details top

Experimental. The diffraction data were obtained from 3 sets of 400 frames, each of width 0.5° in ω, collected at φ = 0.00, 90.00 and 180.00° and 2 sets of 800 frames, each of width 0.45° in φ, collected at ω = –30.00 and 210.00°. The scan time was 5 sec/frame.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.47356 (13)0.07555 (12)0.87693 (7)0.0643 (3)
O20.11670 (14)0.84072 (12)0.87720 (7)0.0745 (3)
N10.65022 (13)0.19922 (12)0.82244 (6)0.0450 (2)
N20.43528 (14)0.56271 (13)0.86512 (6)0.0466 (3)
H2A0.360 (2)0.678 (2)0.8561 (10)0.074 (5)*
C10.61644 (16)0.49845 (15)0.84118 (7)0.0430 (3)
C20.68986 (19)0.61726 (17)0.83285 (8)0.0528 (3)
H20.61810.73600.84200.063*
C30.8672 (2)0.5606 (2)0.81126 (9)0.0641 (4)
H30.91410.64150.80430.077*
C40.9758 (2)0.3830 (2)0.79987 (10)0.0686 (4)
H41.09700.34320.78770.082*
C50.90426 (18)0.26497 (18)0.80653 (9)0.0576 (3)
H50.97810.14600.79850.069*
C60.72332 (16)0.32080 (15)0.82512 (7)0.0440 (3)
C70.53781 (16)0.17720 (14)0.88058 (8)0.0448 (3)
C80.49415 (15)0.29106 (14)0.95032 (7)0.0429 (3)
H8A0.43830.24770.99420.052*
H8B0.60350.28370.96990.052*
C90.36916 (15)0.48169 (14)0.92314 (7)0.0410 (3)
C100.20044 (16)0.56744 (15)0.95487 (8)0.0457 (3)
H100.16100.50380.99310.055*
C110.08004 (17)0.75103 (16)0.93245 (9)0.0530 (3)
C120.09418 (18)0.83550 (19)0.97834 (11)0.0696 (4)
H12A0.08990.76111.02680.104*
H12B0.18980.84920.94550.104*
H12C0.11450.95030.99210.104*
C130.69323 (19)0.09919 (17)0.75086 (8)0.0561 (3)
H13A0.64050.01800.75770.067*
H13B0.82210.02860.74600.067*
C140.62465 (19)0.22126 (19)0.67381 (8)0.0580 (3)
H14A0.68480.29580.66530.070*
H14B0.65690.14860.62870.070*
C150.42421 (19)0.34017 (19)0.67379 (8)0.0561 (3)
H15A0.39260.41970.71620.067*
H15B0.36350.26670.68600.067*
C160.3583 (2)0.4507 (2)0.59375 (8)0.0614 (4)
H16A0.42240.52090.58120.074*
H16B0.38870.37030.55180.074*
C170.1596 (2)0.5751 (2)0.59099 (9)0.0618 (4)
H17A0.12870.65930.63130.074*
H17B0.09430.50640.60470.074*
C180.1012 (2)0.6778 (2)0.50848 (9)0.0656 (4)
H18A0.16970.74320.49460.079*
H18B0.13160.59250.46870.079*
C190.0946 (2)0.8067 (2)0.50190 (9)0.0663 (4)
H19A0.12580.89260.54140.080*
H19B0.16390.74180.51510.080*
C200.1467 (2)0.9068 (2)0.41840 (10)0.0711 (4)
H20A0.07560.96960.40510.085*
H20B0.11590.82030.37920.085*
C210.3395 (3)1.0373 (2)0.40996 (12)0.0848 (5)
H21A0.37081.12370.44920.102*
H21B0.41100.97460.42270.102*
C220.3878 (3)1.1358 (3)0.32680 (14)0.1133 (8)
H22A0.51321.21780.32620.170*
H22B0.36151.05190.28760.170*
H22C0.31941.20030.31390.170*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0662 (6)0.0505 (5)0.0877 (7)0.0352 (5)0.0045 (5)0.0153 (5)
O20.0675 (7)0.0420 (5)0.0939 (8)0.0118 (5)0.0011 (6)0.0115 (5)
N10.0496 (6)0.0347 (5)0.0484 (6)0.0169 (4)0.0028 (4)0.0047 (4)
N20.0485 (6)0.0308 (5)0.0531 (6)0.0127 (4)0.0031 (5)0.0018 (4)
C10.0498 (7)0.0377 (5)0.0405 (6)0.0195 (5)0.0069 (5)0.0020 (5)
C20.0699 (9)0.0460 (6)0.0484 (7)0.0322 (6)0.0057 (6)0.0019 (5)
C30.0759 (10)0.0689 (9)0.0639 (9)0.0489 (8)0.0032 (7)0.0037 (7)
C40.0558 (9)0.0781 (10)0.0751 (10)0.0359 (8)0.0017 (7)0.0036 (8)
C50.0497 (8)0.0514 (7)0.0646 (8)0.0187 (6)0.0018 (6)0.0002 (6)
C60.0473 (7)0.0388 (6)0.0441 (6)0.0185 (5)0.0046 (5)0.0010 (5)
C70.0414 (6)0.0314 (5)0.0568 (7)0.0124 (5)0.0083 (5)0.0001 (5)
C80.0425 (6)0.0357 (5)0.0464 (6)0.0150 (5)0.0063 (5)0.0031 (5)
C90.0455 (6)0.0333 (5)0.0435 (6)0.0166 (5)0.0090 (5)0.0019 (4)
C100.0425 (6)0.0368 (5)0.0556 (7)0.0158 (5)0.0066 (5)0.0018 (5)
C110.0469 (7)0.0394 (6)0.0688 (9)0.0151 (6)0.0122 (6)0.0043 (6)
C120.0465 (8)0.0482 (7)0.1026 (12)0.0105 (6)0.0050 (8)0.0099 (8)
C130.0605 (8)0.0414 (6)0.0596 (8)0.0157 (6)0.0004 (6)0.0132 (6)
C140.0638 (9)0.0600 (8)0.0493 (7)0.0262 (7)0.0052 (6)0.0144 (6)
C150.0617 (8)0.0586 (8)0.0466 (7)0.0262 (7)0.0004 (6)0.0057 (6)
C160.0710 (9)0.0645 (8)0.0481 (7)0.0306 (8)0.0023 (6)0.0034 (6)
C170.0704 (9)0.0626 (8)0.0512 (8)0.0294 (8)0.0069 (7)0.0011 (6)
C180.0774 (10)0.0632 (8)0.0546 (8)0.0309 (8)0.0082 (7)0.0008 (7)
C190.0772 (10)0.0621 (8)0.0581 (9)0.0304 (8)0.0100 (7)0.0001 (7)
C200.0874 (12)0.0642 (9)0.0642 (9)0.0366 (9)0.0170 (8)0.0040 (7)
C210.0953 (13)0.0717 (10)0.0833 (12)0.0334 (10)0.0272 (10)0.0032 (9)
C220.149 (2)0.0893 (13)0.1018 (16)0.0534 (14)0.0625 (14)0.0264 (12)
Geometric parameters (Å, º) top
O1—C71.2190 (14)C13—H13A0.9700
O2—C111.2415 (16)C13—H13B0.9700
N1—C71.3640 (16)C14—C151.515 (2)
N1—C61.4295 (15)C14—H14A0.9700
N1—C131.4692 (16)C14—H14B0.9700
N2—C91.3579 (15)C15—C161.5210 (19)
N2—C11.4060 (16)C15—H15A0.9700
N2—H2A0.887 (16)C15—H15B0.9700
C1—C21.3955 (16)C16—C171.512 (2)
C1—C61.4007 (16)C16—H16A0.9700
C2—C31.374 (2)C16—H16B0.9700
C2—H20.9300C17—C181.525 (2)
C3—C41.384 (2)C17—H17A0.9700
C3—H30.9300C17—H17B0.9700
C4—C51.377 (2)C18—C191.504 (2)
C4—H40.9300C18—H18A0.9700
C5—C61.3927 (18)C18—H18B0.9700
C5—H50.9300C19—C201.526 (2)
C7—C81.5115 (17)C19—H19A0.9700
C8—C91.5054 (15)C19—H19B0.9700
C8—H8A0.9700C20—C211.490 (2)
C8—H8B0.9700C20—H20A0.9700
C9—C101.3612 (17)C20—H20B0.9700
C10—C111.4367 (17)C21—C221.514 (3)
C10—H100.9300C21—H21A0.9700
C11—C121.498 (2)C21—H21B0.9700
C12—H12A0.9600C22—H22A0.9600
C12—H12B0.9600C22—H22B0.9600
C12—H12C0.9600C22—H22C0.9600
C13—C141.5208 (19)
C7—N1—C6123.72 (10)C15—C14—C13114.50 (11)
C7—N1—C13118.75 (10)C15—C14—H14A108.6
C6—N1—C13117.46 (10)C13—C14—H14A108.6
C9—N2—C1125.52 (10)C15—C14—H14B108.6
C9—N2—H2A111.0 (10)C13—C14—H14B108.6
C1—N2—H2A120.2 (10)H14A—C14—H14B107.6
C2—C1—C6119.63 (12)C14—C15—C16113.14 (12)
C2—C1—N2118.29 (11)C14—C15—H15A109.0
C6—C1—N2122.07 (10)C16—C15—H15A109.0
C3—C2—C1120.68 (13)C14—C15—H15B109.0
C3—C2—H2119.7C16—C15—H15B109.0
C1—C2—H2119.7H15A—C15—H15B107.8
C2—C3—C4119.84 (13)C17—C16—C15115.36 (12)
C2—C3—H3120.1C17—C16—H16A108.4
C4—C3—H3120.1C15—C16—H16A108.4
C5—C4—C3120.01 (14)C17—C16—H16B108.4
C5—C4—H4120.0C15—C16—H16B108.4
C3—C4—H4120.0H16A—C16—H16B107.5
C4—C5—C6121.13 (13)C16—C17—C18112.79 (12)
C4—C5—H5119.4C16—C17—H17A109.0
C6—C5—H5119.4C18—C17—H17A109.0
C5—C6—C1118.53 (11)C16—C17—H17B109.0
C5—C6—N1119.33 (11)C18—C17—H17B109.0
C1—C6—N1122.03 (11)H17A—C17—H17B107.8
O1—C7—N1123.17 (12)C19—C18—C17115.60 (13)
O1—C7—C8121.50 (12)C19—C18—H18A108.4
N1—C7—C8115.32 (10)C17—C18—H18A108.4
C9—C8—C7109.74 (9)C19—C18—H18B108.4
C9—C8—H8A109.7C17—C18—H18B108.4
C7—C8—H8A109.7H18A—C18—H18B107.4
C9—C8—H8B109.7C18—C19—C20113.76 (14)
C7—C8—H8B109.7C18—C19—H19A108.8
H8A—C8—H8B108.2C20—C19—H19A108.8
N2—C9—C10122.13 (10)C18—C19—H19B108.8
N2—C9—C8115.85 (10)C20—C19—H19B108.8
C10—C9—C8122.02 (10)H19A—C19—H19B107.7
C9—C10—C11123.47 (12)C21—C20—C19115.22 (15)
C9—C10—H10118.3C21—C20—H20A108.5
C11—C10—H10118.3C19—C20—H20A108.5
O2—C11—C10122.16 (12)C21—C20—H20B108.5
O2—C11—C12119.60 (12)C19—C20—H20B108.5
C10—C11—C12118.24 (13)H20A—C20—H20B107.5
C11—C12—H12A109.5C20—C21—C22114.29 (19)
C11—C12—H12B109.5C20—C21—H21A108.7
H12A—C12—H12B109.5C22—C21—H21A108.7
C11—C12—H12C109.5C20—C21—H21B108.7
H12A—C12—H12C109.5C22—C21—H21B108.7
H12B—C12—H12C109.5H21A—C21—H21B107.6
N1—C13—C14112.14 (10)C21—C22—H22A109.5
N1—C13—H13A109.2C21—C22—H22B109.5
C14—C13—H13A109.2H22A—C22—H22B109.5
N1—C13—H13B109.2C21—C22—H22C109.5
C14—C13—H13B109.2H22A—C22—H22C109.5
H13A—C13—H13B107.9H22B—C22—H22C109.5
C9—N2—C1—C2133.51 (13)O1—C7—C8—C9106.01 (13)
C9—N2—C1—C646.96 (17)N1—C7—C8—C972.89 (13)
C6—C1—C2—C31.84 (19)C1—N2—C9—C10166.11 (11)
N2—C1—C2—C3178.62 (12)C1—N2—C9—C813.82 (17)
C1—C2—C3—C41.9 (2)C7—C8—C9—N263.37 (13)
C2—C3—C4—C53.0 (2)C7—C8—C9—C10116.70 (12)
C3—C4—C5—C60.4 (2)N2—C9—C10—C112.25 (19)
C4—C5—C6—C13.3 (2)C8—C9—C10—C11177.68 (11)
C4—C5—C6—N1172.92 (13)C9—C10—C11—O26.2 (2)
C2—C1—C6—C54.37 (18)C9—C10—C11—C12173.27 (12)
N2—C1—C6—C5176.11 (11)C7—N1—C13—C14115.76 (13)
C2—C1—C6—N1171.75 (11)C6—N1—C13—C1461.51 (15)
N2—C1—C6—N17.77 (18)N1—C13—C14—C1558.53 (16)
C7—N1—C6—C5135.27 (13)C13—C14—C15—C16175.86 (12)
C13—N1—C6—C547.61 (15)C14—C15—C16—C17178.65 (12)
C7—N1—C6—C148.64 (16)C15—C16—C17—C18178.22 (13)
C13—N1—C6—C1128.48 (12)C16—C17—C18—C19178.91 (13)
C6—N1—C7—O1178.57 (11)C17—C18—C19—C20179.79 (13)
C13—N1—C7—O11.49 (17)C18—C19—C20—C21179.32 (14)
C6—N1—C7—C80.31 (16)C19—C20—C21—C22179.61 (15)
C13—N1—C7—C8177.39 (10)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2A···O20.887 (16)1.904 (16)2.6459 (14)140.0 (14)
C5—H5···O2i0.932.543.3123 (17)140
Symmetry code: (i) x+1, y1, z.
 

Acknowledgements

JTM thanks Tulane University for support of the Tulane Crystallography Laboratory.

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