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ISSN: 2414-3146

2-Amino-4-meth­­oxy-6-methyl­pyrimidinium hydrogen phthalate

aDepartment of Chemistry, Government Arts College (Autonomous), Thanthonimalai, Karur 639 005, Tamil Nadu, India, bDepartment of Chemistry, Government Arts College, Tiruchirappalli 620 022, Tamil Nadu, India, and cDepartment of Chemistry, Mother Teresa Women's University, Kodaikanal 624 102, Tamil Nadu, India
*Correspondence e-mail: manavaibala@gmail.com

Edited by H. Stoeckli-Evans, University of Neuchâtel, Switzerland (Received 24 April 2016; accepted 15 May 2016; online 24 May 2016)

In the hydrogen phthalate anion of the title mol­ecular salt, C6H10N3O+·C8H5O4, the dihedral angles formed by the benzene ring and the mean planes of the –COOH and –COO groups are 16.1 (3) and 19.8 (3)°, respectively. There is an intra­molecular O—H⋯O hydrogen bond in the anion generating an S(7) ring motif. In the crystal, the protonated N atom of the pyrimidinium ring and the 2-amino group of the cation are hydrogen bonded to the carboxyl­ate O atoms of the anion via a pair of N—H⋯O hydrogen bonds, forming an R22(8) ring motif. The ion pairs are further connected via N—H⋯O and C—H⋯O hydrogen bonds, forming ribbons parallel to the [01-1] direction. The ribbons are linked by off-set ππ stacking inter­actions [inter­centroid distances = 3.8279 (16) and 3.6074 (15) Å], forming a three-dimensional structure.

3D view (loading...)
[Scheme 3D1]
Chemical scheme
[Scheme 1]

Structure description

Pyrimidine and amino­pyrimidine derivatives are biologically very important compounds and they occur in nature as components of nucleic acids, such as cytosine, uracil and thymine. Pyrimidine derivatives have many applications in the areas of pesticide and pharmaceutical agents (Condon et al., 1993[Condon, M. E., Brady, T. E., Feist, D., Malefyt, T., Marc, P., Quakenbush, L. S., Rodaway, S. J., Shaner, D. L. & Tecle, B. (1993). Brighton Crop Protection Coference on Weeds, pp. 41-46. Alton, Hampshire, England: BCPC Publications.]). For example, imazosulfuron, ethirmol and mepanipyrim have been commercialized as agrochemicals (Maeno et al., 1990[Maeno, S., Miura, I., Masuda, K. & Nagata, T. (1990). Brighton Crop Protection Conference on Pests and Diseases, pp. 415-422 Alton, Hampshire, England: BCPC Publications.]). Pyrimidine derivatives have also been developed as anti­viral agents, such as AZT, which is the most widely used anti-AIDS drug (Gilchrist, 1997[Gilchrist, T. L. (1997). Heterocyclic Chemistry, 3rd ed., pp. 261-276. Singapore: Addison Wesley Longman.]). Phthalic acid forms hydrogen phthalate salts with various organic compounds. Hydrogen phthalates also form supra­molecular assemblies, such as extended chains, ribbons and three-dimensional networks (Dale et al., 2004[Dale, S. H., Elsegood, M. R. J., Hemmings, M. & Wilkinson, A. L. (2004). CrystEngComm, 6, 207-214.]; Ballabh et al., 2005[Ballabh, A., Trivedi, D. R. & Dastidar, P. (2005). Cryst. Growth Des. 5, 1548-1553.]). In order to study hydrogen-bonding inter­actions in such mol­ecular salts, we report herein on the synthesis and structure of the title mol­ecular salt.

The mol­ecular structure of the title mol­ecular salt is illustrated in Fig. 1[link]. In the hydrogen phthalate anion, there is a strong intra­molecular O4—H1O4⋯O3 hydrogen bond enclosing an S(7) ring (Fig. 1[link] and Table 1[link]), which is a result of the negative charge-assisted effect described by Gilli et al. (1994[Gilli, P., Bertolasi, V., Ferretti, V. & Gilli, G. (1994). J. Am. Chem. Soc. 116, 909-915.]). The proton transfers from the one of the carboxyl-group O atoms (O2) to atom N3 of form the 2-amino-4-meth­oxy-6-methyl­pyrimidinium cation, resulting in a widening of the C1—N3—C4 angle of the pyrimidinium ring to 121.2 (2)°, compared to the corresponding angle of 116.01 (18)° in neutral 2-amino-4-meth­oxy-6-methyl­pyrimidine (Glidewell et al., 2003[Glidewell, C., Low, J. N., Melguizo, M. & Quesada, A. (2003). Acta Cryst. C59, o9-o13.]). The 2-amino-4-meth­oxy-6-methyl­pyrimidinium cation is essentially planar, with a maximum deviation of 0.006 (3) Å for atom C3. The carboxyl­ate group of the hydrogen phthalate anion is slightly twisted from the attached ring, with the dihedral angle between the C7–C12 ring and the O2/O3/C14 plane being 19.8 (3)°.

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H1N3⋯O2 0.94 (4) 1.80 (4) 2.738 (3) 172 (3)
N2—H1N2⋯O5i 0.89 (4) 2.03 (4) 2.907 (3) 169 (3)
N2—H2N2⋯O3 0.94 (3) 1.91 (3) 2.846 (3) 177 (3)
O4—H1O4⋯O3 0.83 (3) 1.59 (3) 2.413 (3) 169 (3)
C6—H6A⋯O5ii 0.98 2.48 3.415 (4) 158
Symmetry codes: (i) -x+1, -y+2, -z+1; (ii) x-1, y-1, z-1.
[Figure 1]
Figure 1
The mol­ecular structure of the title mol­ecular salt, showing the atom labelling and 50% probability displacement ellipsoids.

In the crystal, the protonated N atom (N1) and the 2-amino group (N2) are hydrogen bonded to carboxyl­ate O atoms (O2 and O3) via a pair of inter­molecular N3—H1N3⋯O2 and N2—H2N2⋯O3 hydrogen bonds, forming an [R_{2}^{2}](8) ring motif (Fig. 2[link] and Table 1[link]). Furthermore, these motifs are connected via N2—H1N2⋯O5i and weak C6—H6A⋯O5ii hydrogen bonds (the symmetry codes are as in Table 1[link]), forming ribbons parallel to the [01[\overline{1}]] direction. The crystal structure is further stabilized by slipped parallel ππ inter­actions between inversion-related benzene rings of the anion [Cg1⋯Cg1iii = 3.8279 (16) Å, inter­planar distance = 3.465 (1) Å and slippage = 1.626 Å; Cg1 is the centroid of the C7–C12 ring; symmetry code: (iii) −x + 1, −y + 2, −z + 2] and between inversion-related pyrimidinium rings of the cation [Cg2⋯Cg2iv = 3.6074 (15) Å, inter­planar distance = 3.275 (1) Å and slippage = 1.513 Å; Cg2 is the centroid of the N1/N3/C1–C4 ring; symmetry code: (iv) −x, −y + 1, −z + 1], forming a three-dimensional structure.

[Figure 2]
Figure 2
The crystal packing of the title compound, viewed along the c axis. H atoms not involved in the inter­molecular inter­actions (dashed lines; see Table 1[link]) have been omitted for clarity.

Synthesis and crystallization

A hot methanol solution (20 ml) of 2-amino-4-meth­oxy-6-methyl­pyrimidine (69 mg, Aldrich) and phthalic acid (41 mg, Merck) was mixed and warmed over a heating magnetic stirrer hotplate for a few minutes. The resulting solution was allowed to cool slowly to room temperature and crystals of the title salt appeared after a few days.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link].

Table 2
Experimental details

Crystal data
Chemical formula C6H10N3O+·C8H5O4
Mr 305.29
Crystal system, space group Triclinic, P[\overline{1}]
Temperature (K) 100
a, b, c (Å) 7.3951 (4), 9.0021 (4), 10.5163 (4)
α, β, γ (°) 97.298 (3), 92.096 (3), 90.4322 (18)
V3) 693.90 (5)
Z 2
Radiation type Mo Kα
μ (mm−1) 0.11
Crystal size (mm) 0.65 × 0.24 × 0.06
 
Data collection
Diffractometer Bruker SMART APEXII CCD area-detector
Absorption correction Multi-scan (SADABS; Bruker, 2009[Bruker (2009). SADABS, APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.])
Tmin, Tmax 0.931, 0.994
No. of measured, independent and observed [I > 2σ(I)] reflections 9218, 2391, 1802
Rint 0.050
(sin θ/λ)max−1) 0.595
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.058, 0.209, 1.12
No. of reflections 2391
No. of parameters 217
No. of restraints 1
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.37, −0.38
Computer programs: APEX2 and SAINT (Bruker, 2009[Bruker (2009). SADABS, APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]), SHELXS97, SHELXTL and SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]) and PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]).

Structural data


Experimental top

A hot methanol solution (20 ml) of 2-amino-4-methoxy-6-methylpyrimidine (69 mg, Aldrich) and phthalic acid (41 mg, Merck) were mixed and warmed over a heating magnetic stirrer hotplate for a few minutes. The resulting solution was allowed to cool slowly to room temperature and crystals of the title salt appeared after a few days.

Refinement top

Crystal data, data collection and structure refinement details are summarized in Table 2. O– and N-bound H atoms were located in difference Fourier maps. Atoms H1N3, H1N2 and H2N2 were refined freely, while atom H1O4 was refined with an O—H bond restraint of 0.82 (1) Å. C-bound H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95–0.98 Å and Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) otherwise. A rotating-group model was used for the methyl group.

Structure description top

Pyrimidine and aminopyrimidine derivatives are biologically very important compounds and they occur in nature as components of nucleic acids, such as cytosine, uracil and thymine. Pyrimidine derivatives are very important molecules in biology and have many applications in the areas of pesticide and pharmaceutical agents (Condon et al., 1993). For example, imazosulfuron, ethirmol and mepanipyrim have been commercialized as agrochemicals (Maeno et al., 1990). Pyrimidine derivatives have also been developed as antiviral agents, such as AZT, which is the most widely used anti-AIDS drug (Gilchrist, 1997). Phthalic acid forms hydrogen phthalate salts with various organic compounds. Hydrogen phthalates also form supramolecular assemblies, such as extended chains, ribbons and three-dimensional networks (Dale et al., 2004; Ballabh et al., 2005). In order to study hydrogen-bonding interactions in such molecular salts, we report herein on the synthesis and structure of the title molecular salt.

The molecular structure of the title molecular salt is illustrated in Fig. 1. In the hydrogen phthalate anion, there is a strong intramolecular O4—H1O4···O3 hydrogen bond enclosing an S(7) ring (Fig. 1 and Table 1), which is a result of the negative charge-assisted effect described by Gilli et al. (1994). The proton transfers from the one of the carboxyl group O atoms (O2) to atom N3 of form the 2-amino-4-methoxy-6-methylpyrimidinium cation, resulting in the widening of the C1–N3–C4 angle of the pyrimidinium ring to 121.2 (2)°, compared to the corresponding angle of 116.01 (18)° in neutral 2-amino-4-methoxy-6- methylpyrimidine (Glidewell et al., 2003). The 2-amino-4-methoxy-6-methylpyrimidinium cation is essentially planar, with a maximum deviation of 0.006 (3) Å for atom C3. The carboxylate group of the hydrogen phthalate anion is slightly twisted from the attached ring, with the dihedral angle between the C7–C12 ring and the O2/O3/C14 plane being 19.8 (3)°.

In the crystal, the protonated N atom (N1) and the 2-amino group (N2) are hydrogen bonded to carboxylate O atoms (O2 and O3) via a pair of intermolecular N3—H1N3···O2 and N2—H2N2···O3 hydrogen bonds, forming an R22(8) ring motif (Fig. 2 and Table 1). Furthermore, these motifs are connected via N2—H1N2···O5i and weak C6—H6A···O5ii hydrogen bonds (the symmetry codes are as in Table 1), forming ribbons parallel to the [011] direction. The crystal structure is further stabilized by slipped parallel ππ interactions between inversion-related benzene rings of the anion [Cg1···Cg1iii = 3.8279 (16) Å, interplanar distance = 3.465 (1) Å and slippage = 1.626 Å; Cg1 is the centroid of the C7–C12 ring; symmetry code: (iii) -x + 1, -y + 2, -z + 2] and between inversion-related pyrimidinium rings of the cation [Cg2···Cg2iv = 3.6074 (15) Å, interplanar distance = 3.275 (1) Å and slippage = 1.513 Å; Cg2 is the centroid of the N1/N3/C1–C4 ring; symmetry code: (iv) -x, -y + 1, -z + 1], forming a three-dimensional structure.

Computing details top

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).

Figures top
[Figure 1] Fig. 1. The molecular structure of the title molecular salt, showing the atom labelling and 50% probability displacement ellipsoids.
[Figure 2] Fig. 2. The crystal packing of the title compound, viewed along the c axis. The H atoms not involved in the intermolecular interactions (dashed lines; see Table 1) have been omitted for clarity.
2-Amino-4-methoxy-6-methylpyrimidinium hydrogen phthalate top
Crystal data top
C6H10N3O+·C8H5O4Z = 2
Mr = 305.29F(000) = 320
Triclinic, P1Dx = 1.461 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3951 (4) ÅCell parameters from 3654 reflections
b = 9.0021 (4) Åθ = 2.8–29.5°
c = 10.5163 (4) ŵ = 0.11 mm1
α = 97.298 (3)°T = 100 K
β = 92.096 (3)°Plate, colourless
γ = 90.4322 (18)°0.65 × 0.24 × 0.06 mm
V = 693.90 (5) Å3
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
2391 independent reflections
Radiation source: fine-focus sealed tube1802 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.050
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
h = 88
Tmin = 0.931, Tmax = 0.994k = 1010
9218 measured reflectionsl = 1212
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.209H atoms treated by a mixture of independent and constrained refinement
S = 1.12 w = 1/[σ2(Fo2) + (0.1227P)2 + 0.4813P]
where P = (Fo2 + 2Fc2)/3
2391 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.37 e Å3
1 restraintΔρmin = 0.38 e Å3
Crystal data top
C6H10N3O+·C8H5O4γ = 90.4322 (18)°
Mr = 305.29V = 693.90 (5) Å3
Triclinic, P1Z = 2
a = 7.3951 (4) ÅMo Kα radiation
b = 9.0021 (4) ŵ = 0.11 mm1
c = 10.5163 (4) ÅT = 100 K
α = 97.298 (3)°0.65 × 0.24 × 0.06 mm
β = 92.096 (3)°
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
2391 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
1802 reflections with I > 2σ(I)
Tmin = 0.931, Tmax = 0.994Rint = 0.050
9218 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0581 restraint
wR(F2) = 0.209H atoms treated by a mixture of independent and constrained refinement
S = 1.12Δρmax = 0.37 e Å3
2391 reflectionsΔρmin = 0.38 e Å3
217 parameters
Special details top

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.0588 (3)0.2684 (2)0.17366 (17)0.0215 (5)
O20.4117 (3)0.5765 (2)0.70319 (17)0.0240 (5)
O30.4156 (3)0.7964 (2)0.62996 (18)0.0263 (5)
O40.5952 (3)1.0238 (2)0.66349 (18)0.0252 (5)
O50.8160 (3)1.1196 (2)0.79417 (18)0.0262 (5)
N10.0956 (3)0.4729 (2)0.2777 (2)0.0184 (5)
N20.2541 (3)0.6709 (3)0.3901 (2)0.0214 (6)
N30.2275 (3)0.4535 (2)0.4839 (2)0.0192 (6)
C10.1924 (4)0.5324 (3)0.3839 (2)0.0188 (6)
C20.0351 (4)0.3341 (3)0.2767 (2)0.0179 (6)
C30.0649 (4)0.2466 (3)0.3776 (3)0.0202 (6)
H3A0.01720.14760.37290.024*
C40.1648 (4)0.3099 (3)0.4819 (3)0.0204 (6)
C50.2110 (4)0.2345 (3)0.5968 (3)0.0252 (7)
H5A0.34270.23540.61150.038*
H5B0.16620.13080.58250.038*
H5C0.15460.28790.67200.038*
C60.0780 (4)0.3558 (3)0.0676 (3)0.0232 (7)
H6A0.14210.29600.00490.035*
H6B0.04210.38420.04160.035*
H6C0.14690.44620.09420.035*
C70.5555 (3)0.7771 (3)0.8393 (3)0.0189 (6)
C80.5409 (4)0.6919 (3)0.9408 (3)0.0202 (6)
H8A0.47560.59960.92620.024*
C90.6175 (4)0.7366 (3)1.0616 (3)0.0224 (6)
H9A0.59960.67891.12980.027*
C100.7213 (4)0.8674 (3)1.0816 (3)0.0226 (7)
H10A0.77720.89871.16340.027*
C110.7428 (4)0.9514 (3)0.9827 (3)0.0223 (6)
H11A0.81741.03880.99710.027*
C120.6584 (3)0.9126 (3)0.8611 (3)0.0178 (6)
C130.6944 (4)1.0250 (3)0.7689 (3)0.0205 (6)
C140.4542 (4)0.7115 (3)0.7152 (3)0.0198 (6)
H1N30.292 (5)0.504 (4)0.556 (4)0.038 (10)*
H1N20.225 (5)0.725 (4)0.327 (4)0.039 (10)*
H2N20.311 (5)0.712 (4)0.468 (3)0.033 (9)*
H1O40.523 (4)0.952 (3)0.649 (4)0.056 (12)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0247 (11)0.0213 (10)0.0179 (10)0.0043 (8)0.0049 (8)0.0024 (8)
O20.0271 (11)0.0217 (11)0.0227 (11)0.0045 (8)0.0059 (9)0.0040 (8)
O30.0313 (12)0.0238 (11)0.0243 (11)0.0068 (9)0.0107 (9)0.0086 (9)
O40.0298 (12)0.0232 (11)0.0233 (11)0.0097 (9)0.0102 (9)0.0097 (9)
O50.0303 (12)0.0229 (10)0.0259 (11)0.0101 (9)0.0060 (9)0.0079 (8)
N10.0183 (12)0.0173 (11)0.0197 (12)0.0032 (9)0.0006 (9)0.0038 (9)
N20.0260 (13)0.0197 (12)0.0187 (12)0.0053 (10)0.0039 (10)0.0045 (10)
N30.0207 (12)0.0190 (12)0.0180 (12)0.0024 (9)0.0009 (10)0.0032 (9)
C10.0165 (13)0.0220 (14)0.0183 (13)0.0007 (10)0.0002 (10)0.0039 (11)
C20.0161 (13)0.0205 (13)0.0169 (13)0.0007 (10)0.0008 (11)0.0012 (11)
C30.0218 (14)0.0173 (13)0.0219 (14)0.0026 (11)0.0012 (12)0.0048 (11)
C40.0179 (14)0.0195 (14)0.0241 (14)0.0004 (11)0.0021 (11)0.0040 (11)
C50.0279 (16)0.0245 (15)0.0241 (15)0.0021 (12)0.0026 (12)0.0076 (11)
C60.0285 (15)0.0244 (15)0.0168 (13)0.0009 (12)0.0035 (11)0.0047 (11)
C70.0140 (13)0.0210 (14)0.0221 (14)0.0002 (10)0.0017 (11)0.0055 (11)
C80.0203 (14)0.0198 (13)0.0205 (14)0.0031 (11)0.0015 (11)0.0034 (11)
C90.0247 (15)0.0234 (14)0.0202 (14)0.0002 (11)0.0006 (12)0.0080 (11)
C100.0259 (15)0.0235 (14)0.0183 (14)0.0014 (12)0.0034 (11)0.0037 (11)
C110.0221 (14)0.0201 (14)0.0243 (14)0.0034 (11)0.0040 (12)0.0030 (11)
C120.0160 (13)0.0165 (13)0.0214 (14)0.0028 (10)0.0007 (11)0.0050 (10)
C130.0211 (14)0.0191 (14)0.0208 (14)0.0003 (11)0.0013 (11)0.0010 (11)
C140.0172 (13)0.0215 (14)0.0205 (14)0.0029 (11)0.0024 (11)0.0022 (11)
Geometric parameters (Å, º) top
O1—C21.335 (3)C4—C51.490 (4)
O1—C61.448 (3)C5—H5A0.9800
O2—C141.243 (3)C5—H5B0.9800
O3—C141.276 (3)C5—H5C0.9800
O3—H1O41.588 (13)C6—H6A0.9800
O4—C131.306 (3)C6—H6B0.9800
O4—H1O40.834 (10)C6—H6C0.9800
O5—C131.232 (3)C7—C81.399 (4)
N1—C21.323 (3)C7—C121.421 (4)
N1—C11.353 (3)C7—C141.529 (4)
N2—C11.318 (4)C8—C91.382 (4)
N2—H1N20.90 (4)C8—H8A0.9500
N2—H2N20.94 (4)C9—C101.390 (4)
N3—C11.360 (3)C9—H9A0.9500
N3—C41.367 (4)C10—C111.374 (4)
N3—H1N30.95 (4)C10—H10A0.9500
C2—C31.412 (4)C11—C121.405 (4)
C3—C41.360 (4)C11—H11A0.9500
C3—H3A0.9500C12—C131.516 (4)
C2—O1—C6115.7 (2)O1—C6—H6B109.5
C14—O3—H1O4114.1 (15)H6A—C6—H6B109.5
C13—O4—H1O4114 (3)O1—C6—H6C109.5
C2—N1—C1116.4 (2)H6A—C6—H6C109.5
C1—N2—H1N2120 (2)H6B—C6—H6C109.5
C1—N2—H2N2117 (2)C8—C7—C12118.2 (2)
H1N2—N2—H2N2123 (3)C8—C7—C14114.5 (2)
C1—N3—C4121.2 (2)C12—C7—C14127.3 (2)
C1—N3—H1N3117 (2)C9—C8—C7122.6 (3)
C4—N3—H1N3122 (2)C9—C8—H8A118.7
N2—C1—N1118.7 (2)C7—C8—H8A118.7
N2—C1—N3119.4 (2)C8—C9—C10118.9 (2)
N1—C1—N3121.9 (2)C8—C9—H9A120.6
N1—C2—O1119.2 (2)C10—C9—H9A120.6
N1—C2—C3124.6 (2)C11—C10—C9119.9 (3)
O1—C2—C3116.2 (2)C11—C10—H10A120.0
C4—C3—C2117.1 (2)C9—C10—H10A120.0
C4—C3—H3A121.4C10—C11—C12122.2 (2)
C2—C3—H3A121.4C10—C11—H11A118.9
C3—C4—N3118.7 (3)C12—C11—H11A118.9
C3—C4—C5124.7 (3)C11—C12—C7118.0 (2)
N3—C4—C5116.6 (2)C11—C12—C13113.1 (2)
C4—C5—H5A109.5C7—C12—C13128.9 (2)
C4—C5—H5B109.5O5—C13—O4119.6 (2)
H5A—C5—H5B109.5O5—C13—C12120.1 (2)
C4—C5—H5C109.5O4—C13—C12120.3 (2)
H5A—C5—H5C109.5O2—C14—O3123.0 (2)
H5B—C5—H5C109.5O2—C14—C7117.6 (2)
O1—C6—H6A109.5O3—C14—C7119.3 (2)
C2—N1—C1—N2179.3 (2)C8—C9—C10—C111.4 (4)
C2—N1—C1—N30.8 (4)C9—C10—C11—C122.0 (4)
C4—N3—C1—N2179.4 (2)C10—C11—C12—C73.4 (4)
C4—N3—C1—N10.6 (4)C10—C11—C12—C13177.4 (2)
C1—N1—C2—O1178.9 (2)C8—C7—C12—C111.3 (4)
C1—N1—C2—C30.0 (4)C14—C7—C12—C11179.3 (2)
C6—O1—C2—N13.0 (3)C8—C7—C12—C13179.6 (2)
C6—O1—C2—C3176.1 (2)C14—C7—C12—C130.1 (4)
N1—C2—C3—C40.8 (4)C11—C12—C13—O514.3 (4)
O1—C2—C3—C4178.1 (2)C7—C12—C13—O5164.8 (3)
C2—C3—C4—N30.9 (4)C11—C12—C13—O4164.6 (2)
C2—C3—C4—C5179.6 (2)C7—C12—C13—O416.2 (4)
C1—N3—C4—C30.3 (4)C8—C7—C14—O218.8 (3)
C1—N3—C4—C5179.8 (2)C12—C7—C14—O2161.8 (3)
C12—C7—C8—C92.1 (4)C8—C7—C14—O3160.6 (2)
C14—C7—C8—C9177.4 (2)C12—C7—C14—O318.9 (4)
C7—C8—C9—C103.5 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N3—H1N3···O20.94 (4)1.80 (4)2.738 (3)172 (3)
N2—H1N2···O5i0.89 (4)2.03 (4)2.907 (3)169 (3)
N2—H2N2···O30.94 (3)1.91 (3)2.846 (3)177 (3)
O4—H1O4···O30.83 (3)1.59 (3)2.413 (3)169 (3)
C6—H6A···O5ii0.982.483.415 (4)158
Symmetry codes: (i) x+1, y+2, z+1; (ii) x1, y1, z1.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N3—H1N3···O20.94 (4)1.80 (4)2.738 (3)172 (3)
N2—H1N2···O5i0.89 (4)2.03 (4)2.907 (3)169 (3)
N2—H2N2···O30.94 (3)1.91 (3)2.846 (3)177 (3)
O4—H1O4···O30.83 (3)1.59 (3)2.413 (3)169 (3)
C6—H6A···O5ii0.982.483.415 (4)158
Symmetry codes: (i) x+1, y+2, z+1; (ii) x1, y1, z1.

Experimental details

Crystal data
Chemical formulaC6H10N3O+·C8H5O4
Mr305.29
Crystal system, space groupTriclinic, P1
Temperature (K)100
a, b, c (Å)7.3951 (4), 9.0021 (4), 10.5163 (4)
α, β, γ (°)97.298 (3), 92.096 (3), 90.4322 (18)
V3)693.90 (5)
Z2
Radiation typeMo Kα
µ (mm1)0.11
Crystal size (mm)0.65 × 0.24 × 0.06
Data collection
DiffractometerBruker SMART APEXII CCD area-detector
Absorption correctionMulti-scan
(SADABS; Bruker, 2009)
Tmin, Tmax0.931, 0.994
No. of measured, independent and
observed [I > 2σ(I)] reflections
9218, 2391, 1802
Rint0.050
(sin θ/λ)max1)0.595
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.058, 0.209, 1.12
No. of reflections2391
No. of parameters217
No. of restraints1
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.37, 0.38

Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).

 

Acknowledgements

RS thanks the Department of Science and Technology (DST), New Delhi, India, for financial support in the form of an INSPIRE fellowship (INSPIRE code No. IF131050).

References

First citationBallabh, A., Trivedi, D. R. & Dastidar, P. (2005). Cryst. Growth Des. 5, 1548–1553.  Web of Science CSD CrossRef Google Scholar
First citationBruker (2009). SADABS, APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
First citationCondon, M. E., Brady, T. E., Feist, D., Malefyt, T., Marc, P., Quakenbush, L. S., Rodaway, S. J., Shaner, D. L. & Tecle, B. (1993). Brighton Crop Protection Coference on Weeds, pp. 41–46. Alton, Hampshire, England: BCPC Publications.  Google Scholar
First citationDale, S. H., Elsegood, M. R. J., Hemmings, M. & Wilkinson, A. L. (2004). CrystEngComm, 6, 207–214.  Web of Science CSD CrossRef CAS Google Scholar
First citationGilchrist, T. L. (1997). Heterocyclic Chemistry, 3rd ed., pp. 261–276. Singapore: Addison Wesley Longman.  Google Scholar
First citationGilli, P., Bertolasi, V., Ferretti, V. & Gilli, G. (1994). J. Am. Chem. Soc. 116, 909–915.  CrossRef CAS Web of Science Google Scholar
First citationGlidewell, C., Low, J. N., Melguizo, M. & Quesada, A. (2003). Acta Cryst. C59, o9–o13.  Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
First citationMaeno, S., Miura, I., Masuda, K. & Nagata, T. (1990). Brighton Crop Protection Conference on Pests and Diseases, pp. 415–422 Alton, Hampshire, England: BCPC Publications.  Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSpek, A. L. (2009). Acta Cryst. D65, 148–155.  Web of Science CrossRef CAS IUCr Journals Google Scholar

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