organic compounds
3-Carboxy-2-(piperidin-1-ium-1-yl)propanoate
aDepartment of Physics, Alagappa University, Karaikkudi 630 003, India, bDepartment of Physics, Presidency College, Chennai 600 005, India, and cDepartment of Physics, CPCL Polytechnic College, Chennai 600 068, India
*Correspondence e-mail: sudhaharphdphysics@gmail.com, chakkaravarthi_2005@yahoo.com
In the zwitterionic title compound, C9H15NO4, the piperidinium N atom is protonated and the OH group of one of the carboxylate groups is deprotonated. The piperidinium ring adopts a chair conformation. In the crystal, N—H⋯O and O—H⋯O hydrogen bonds generate an R33(15) ring motif and link the molecules into infinite chains propagating along [010]. The structure is further consolidated by weak C—H⋯O interactions to form a three-dimensional network.
Keywords: crystal structure; hydrogen bonding; zwitterion..
CCDC reference: 1478206
Structure description
Piperidine and its derivatives find extensive applications in some areas of biochemistry and material chemistry. They also exhibit good bioactivity (Cardellicchio et al. 2010; Huang et al. 2008). We report here the synthesis and the of the title compound (Fig. 1). The N atom of the the piperidinium ring is protonated while the OH substituent of one of the carboxylate groups is deprotonated. The geometric parameters are comparable to those reported for similar structures (Aravindhan et al., 2009; Sankar et al., 2014).
The piperidine ring (N1/C1–C5) adopts a chair conformation with puckering parameters of Q = 0.579 (3) Å; θ = 1.0 (3)° and φ = 134 (15)°. An intramolecular N—H⋯O hydrogen bond occurs (Table 1). In the crystal, N—H⋯O and O—H⋯O hydrogen bonds generate R33(15) ring motifs (Fig. 2) and link the molecules into infinite chains along [010]. The structure is further consolidated by weak C—H⋯O interactions (Table 1 and Fig. 3) to form a three-dimensional network.
Synthesis and crystallization
The title compound was synthesized from piperidine (0.85 g) and maleic acid (1.16 g) in a methanol:water mixed solvent system. Colourless block-like crystals suitable for single-crystal X-ray diffraction were grown by slow evaporation from methanol:water (1:1) mixed solvent.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2
|
Structural data
CCDC reference: 1478206
10.1107/S2414314616007483/sj4031sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2414314616007483/sj4031Isup2.hkl
Supporting information file. DOI: 10.1107/S2414314616007483/sj4031Isup3.cml
The title compound was synthesized from piperidine (0.85 g) and maleic acid (1.16 g) in a methanol:water mixed solvent system. Colourless block-like crystals suitable for single-crystal X-ray diffraction were grown by slow evaporation.
Piperidine and its derivatives find extensive applications in some areas of biochemistry and material chemistry. They also exhibit good bioactivity (Cardellicchio et al. 2010; Huang et al. 2008). We report here the synthesis and the
of the title compound (Fig. 1). The N atom of the the piperidinium ring is protonated while the OH substituent of one of the carboxylate groups is deprotonated. The geometric parameters are comparable to those reported for similar structures (Aravindhan et al., 2009; Sankar et al., 2014).The piperidine ring (N1/C1–C5) adopts a chair conformation with puckering parameters of Q = 0.579 (3) Å; θ = 1.0 (3)° and φ = 134 (15)°. In the crystal, C—H1B···O3 and C5—H5A···O4 contacts generate R22(8) ring motifs (Fig. 2). O—H···O and N—H···O hydrogen bonds form infinite chains along [010] and these chains are further consolidated by weak C—H···O interactions (Table 1 and Fig. 2) to form a three-dimensional network.
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, with atom labelling and 30% probability displacement ellipsoids. | |
Fig. 2. A partial packing diagram showing the ring motif. | |
Fig. 3. Crystal packing of the title compound viewed along the b axis. Hydrogen bonds (see Table 1) are shown as dashed lines and C-bound H atoms have been omitted for clarity. |
C9H15NO4 | F(000) = 432 |
Mr = 201.22 | Dx = 1.345 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5733 reflections |
a = 9.8364 (8) Å | θ = 2.1–28.3° |
b = 5.9731 (5) Å | µ = 0.11 mm−1 |
c = 17.0805 (15) Å | T = 295 K |
β = 98.152 (5)° | Block, colourless |
V = 993.40 (15) Å3 | 0.24 × 0.22 × 0.18 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 2431 independent reflections |
Radiation source: fine-focus sealed tube | 1446 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.054 |
ω and φ scans | θmax = 28.4°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −9→13 |
Tmin = 0.975, Tmax = 0.981 | k = −7→7 |
8624 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.172 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.090P)2 + 0.0823P] where P = (Fo2 + 2Fc2)/3 |
2431 reflections | (Δ/σ)max < 0.001 |
134 parameters | Δρmax = 0.28 e Å−3 |
2 restraints | Δρmin = −0.19 e Å−3 |
C9H15NO4 | V = 993.40 (15) Å3 |
Mr = 201.22 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.8364 (8) Å | µ = 0.11 mm−1 |
b = 5.9731 (5) Å | T = 295 K |
c = 17.0805 (15) Å | 0.24 × 0.22 × 0.18 mm |
β = 98.152 (5)° |
Bruker Kappa APEXII CCD diffractometer | 2431 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 1446 reflections with I > 2σ(I) |
Tmin = 0.975, Tmax = 0.981 | Rint = 0.054 |
8624 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 2 restraints |
wR(F2) = 0.172 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.28 e Å−3 |
2431 reflections | Δρmin = −0.19 e Å−3 |
134 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2180 (2) | 0.4085 (3) | 0.85245 (13) | 0.0411 (5) | |
H1A | 0.1439 | 0.5094 | 0.8324 | 0.049* | |
H1B | 0.3042 | 0.4866 | 0.8513 | 0.049* | |
C2 | 0.2051 (3) | 0.3451 (4) | 0.93646 (14) | 0.0516 (6) | |
H2A | 0.1164 | 0.2757 | 0.9381 | 0.062* | |
H2B | 0.2103 | 0.4788 | 0.9690 | 0.062* | |
C3 | 0.3179 (3) | 0.1844 (4) | 0.96931 (15) | 0.0592 (7) | |
H3A | 0.4066 | 0.2570 | 0.9714 | 0.071* | |
H3B | 0.3060 | 0.1407 | 1.0226 | 0.071* | |
C4 | 0.3125 (3) | −0.0200 (4) | 0.91702 (15) | 0.0539 (6) | |
H4A | 0.2267 | −0.0985 | 0.9187 | 0.065* | |
H4B | 0.3870 | −0.1203 | 0.9369 | 0.065* | |
C5 | 0.3241 (2) | 0.0422 (4) | 0.83234 (14) | 0.0421 (5) | |
H5A | 0.4133 | 0.1089 | 0.8299 | 0.051* | |
H5B | 0.3167 | −0.0918 | 0.7999 | 0.051* | |
C6 | 0.0979 (2) | 0.4225 (3) | 0.68531 (12) | 0.0369 (5) | |
C7 | 0.22115 (18) | 0.2712 (3) | 0.71628 (12) | 0.0344 (5) | |
H7 | 0.3069 | 0.3526 | 0.7138 | 0.041* | |
C8 | 0.21416 (19) | 0.0678 (3) | 0.66188 (13) | 0.0380 (5) | |
H8A | 0.1588 | −0.0464 | 0.6825 | 0.046* | |
H8B | 0.1676 | 0.1110 | 0.6102 | 0.046* | |
C9 | 0.3517 (2) | −0.0332 (4) | 0.65187 (14) | 0.0450 (6) | |
N1 | 0.21295 (15) | 0.2051 (3) | 0.80041 (10) | 0.0338 (4) | |
O1 | −0.01285 (13) | 0.3786 (2) | 0.70850 (9) | 0.0445 (4) | |
H1 | 0.1320 (13) | 0.137 (3) | 0.7984 (13) | 0.039 (6)* | |
O2 | 0.11830 (16) | 0.5682 (3) | 0.63616 (10) | 0.0505 (4) | |
O3 | 0.45737 (16) | 0.0721 (3) | 0.66196 (12) | 0.0654 (6) | |
O4 | 0.34903 (16) | −0.2428 (3) | 0.62772 (12) | 0.0605 (5) | |
H4 | 0.2710 (17) | −0.298 (5) | 0.6272 (19) | 0.091* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0414 (11) | 0.0339 (12) | 0.0483 (13) | −0.0003 (9) | 0.0073 (9) | −0.0037 (10) |
C2 | 0.0614 (14) | 0.0503 (14) | 0.0444 (13) | −0.0025 (11) | 0.0113 (11) | −0.0060 (11) |
C3 | 0.0712 (16) | 0.0597 (17) | 0.0442 (14) | −0.0016 (13) | −0.0002 (12) | 0.0022 (12) |
C4 | 0.0599 (14) | 0.0508 (15) | 0.0493 (14) | 0.0055 (12) | 0.0018 (11) | 0.0083 (12) |
C5 | 0.0354 (10) | 0.0402 (13) | 0.0501 (13) | 0.0051 (9) | 0.0041 (9) | 0.0031 (10) |
C6 | 0.0394 (10) | 0.0315 (12) | 0.0404 (12) | 0.0015 (8) | 0.0080 (9) | −0.0046 (9) |
C7 | 0.0291 (9) | 0.0343 (11) | 0.0417 (11) | −0.0007 (8) | 0.0117 (8) | 0.0031 (9) |
C8 | 0.0362 (10) | 0.0388 (12) | 0.0406 (11) | 0.0061 (8) | 0.0112 (8) | 0.0004 (9) |
C9 | 0.0431 (11) | 0.0461 (14) | 0.0500 (13) | 0.0084 (10) | 0.0211 (10) | 0.0042 (11) |
N1 | 0.0291 (8) | 0.0333 (10) | 0.0399 (9) | −0.0015 (7) | 0.0082 (7) | 0.0005 (7) |
O1 | 0.0331 (7) | 0.0460 (10) | 0.0559 (10) | 0.0063 (6) | 0.0112 (7) | 0.0024 (7) |
O2 | 0.0545 (9) | 0.0429 (10) | 0.0549 (10) | 0.0052 (7) | 0.0105 (7) | 0.0122 (8) |
O3 | 0.0414 (9) | 0.0641 (12) | 0.0967 (15) | 0.0007 (8) | 0.0303 (9) | −0.0062 (10) |
O4 | 0.0533 (10) | 0.0460 (11) | 0.0875 (13) | 0.0113 (8) | 0.0282 (9) | −0.0067 (9) |
C1—N1 | 1.503 (3) | C5—H5B | 0.9700 |
C1—C2 | 1.507 (3) | C6—O1 | 1.239 (2) |
C1—H1A | 0.9700 | C6—O2 | 1.245 (2) |
C1—H1B | 0.9700 | C6—C7 | 1.544 (3) |
C2—C3 | 1.513 (3) | C7—N1 | 1.503 (2) |
C2—H2A | 0.9700 | C7—C8 | 1.525 (3) |
C2—H2B | 0.9700 | C7—H7 | 0.9800 |
C3—C4 | 1.509 (3) | C8—C9 | 1.513 (3) |
C3—H3A | 0.9700 | C8—H8A | 0.9700 |
C3—H3B | 0.9700 | C8—H8B | 0.9700 |
C4—C5 | 1.513 (3) | C9—O3 | 1.206 (3) |
C4—H4A | 0.9700 | C9—O4 | 1.317 (3) |
C4—H4B | 0.9700 | N1—H1 | 0.891 (9) |
C5—N1 | 1.507 (3) | O4—H4 | 0.834 (10) |
C5—H5A | 0.9700 | ||
N1—C1—C2 | 111.08 (18) | C4—C5—H5B | 109.5 |
N1—C1—H1A | 109.4 | H5A—C5—H5B | 108.1 |
C2—C1—H1A | 109.4 | O1—C6—O2 | 126.62 (19) |
N1—C1—H1B | 109.4 | O1—C6—C7 | 116.74 (18) |
C2—C1—H1B | 109.4 | O2—C6—C7 | 116.51 (16) |
H1A—C1—H1B | 108.0 | N1—C7—C8 | 111.65 (16) |
C1—C2—C3 | 110.87 (19) | N1—C7—C6 | 109.60 (14) |
C1—C2—H2A | 109.5 | C8—C7—C6 | 106.99 (17) |
C3—C2—H2A | 109.5 | N1—C7—H7 | 109.5 |
C1—C2—H2B | 109.5 | C8—C7—H7 | 109.5 |
C3—C2—H2B | 109.5 | C6—C7—H7 | 109.5 |
H2A—C2—H2B | 108.1 | C9—C8—C7 | 115.00 (18) |
C4—C3—C2 | 109.4 (2) | C9—C8—H8A | 108.5 |
C4—C3—H3A | 109.8 | C7—C8—H8A | 108.5 |
C2—C3—H3A | 109.8 | C9—C8—H8B | 108.5 |
C4—C3—H3B | 109.8 | C7—C8—H8B | 108.5 |
C2—C3—H3B | 109.8 | H8A—C8—H8B | 107.5 |
H3A—C3—H3B | 108.3 | O3—C9—O4 | 121.26 (19) |
C3—C4—C5 | 111.5 (2) | O3—C9—C8 | 122.8 (2) |
C3—C4—H4A | 109.3 | O4—C9—C8 | 115.82 (19) |
C5—C4—H4A | 109.3 | C1—N1—C7 | 110.55 (15) |
C3—C4—H4B | 109.3 | C1—N1—C5 | 110.28 (16) |
C5—C4—H4B | 109.3 | C7—N1—C5 | 112.41 (14) |
H4A—C4—H4B | 108.0 | C1—N1—H1 | 110.3 (14) |
N1—C5—C4 | 110.80 (17) | C7—N1—H1 | 104.6 (14) |
N1—C5—H5A | 109.5 | C5—N1—H1 | 108.6 (14) |
C4—C5—H5A | 109.5 | C9—O4—H4 | 111 (2) |
N1—C5—H5B | 109.5 | ||
N1—C1—C2—C3 | 58.1 (2) | C7—C8—C9—O3 | −24.1 (3) |
C1—C2—C3—C4 | −57.2 (3) | C7—C8—C9—O4 | 158.87 (19) |
C2—C3—C4—C5 | 56.8 (3) | C2—C1—N1—C7 | 178.09 (16) |
C3—C4—C5—N1 | −56.9 (3) | C2—C1—N1—C5 | −57.0 (2) |
O1—C6—C7—N1 | −36.0 (2) | C8—C7—N1—C1 | −179.20 (14) |
O2—C6—C7—N1 | 147.90 (18) | C6—C7—N1—C1 | −60.8 (2) |
O1—C6—C7—C8 | 85.2 (2) | C8—C7—N1—C5 | 57.1 (2) |
O2—C6—C7—C8 | −90.9 (2) | C6—C7—N1—C5 | 175.46 (16) |
N1—C7—C8—C9 | −91.2 (2) | C4—C5—N1—C1 | 56.1 (2) |
C6—C7—C8—C9 | 148.93 (18) | C4—C5—N1—C7 | 179.93 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.89 (1) | 2.42 (2) | 2.736 (2) | 101 (2) |
C1—H1A···O1 | 0.97 | 2.56 | 3.107 (3) | 116 |
C7—H7···O3 | 0.98 | 2.48 | 2.879 (2) | 104 |
N1—H1···O1i | 0.89 (1) | 1.93 (1) | 2.759 (2) | 154 (2) |
O4—H4···O2ii | 0.83 (1) | 1.73 (1) | 2.557 (2) | 173 (3) |
C1—H1A···O1iii | 0.97 | 2.60 | 3.528 (3) | 160 |
C1—H1B···O3iv | 0.97 | 2.44 | 3.381 (3) | 163 |
C5—H5A···O4iv | 0.97 | 2.51 | 3.439 (3) | 161 |
C8—H8A···O2ii | 0.97 | 2.45 | 3.142 (3) | 128 |
C8—H8A···O1i | 0.97 | 2.55 | 3.368 (2) | 143 |
Symmetry codes: (i) −x, y−1/2, −z+3/2; (ii) x, y−1, z; (iii) −x, y+1/2, −z+3/2; (iv) −x+1, y+1/2, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.891 (9) | 2.42 (2) | 2.736 (2) | 101.2 (15) |
C1—H1A···O1 | 0.97 | 2.56 | 3.107 (3) | 116 |
C7—H7···O3 | 0.98 | 2.48 | 2.879 (2) | 104 |
N1—H1···O1i | 0.891 (9) | 1.931 (12) | 2.759 (2) | 154.0 (19) |
O4—H4···O2ii | 0.834 (10) | 1.728 (11) | 2.557 (2) | 173 (3) |
C1—H1A···O1iii | 0.97 | 2.60 | 3.528 (3) | 160 |
C1—H1B···O3iv | 0.97 | 2.44 | 3.381 (3) | 163 |
C5—H5A···O4iv | 0.97 | 2.51 | 3.439 (3) | 161 |
C8—H8A···O2ii | 0.97 | 2.45 | 3.142 (3) | 128 |
C8—H8A···O1i | 0.97 | 2.55 | 3.368 (2) | 143 |
Symmetry codes: (i) −x, y−1/2, −z+3/2; (ii) x, y−1, z; (iii) −x, y+1/2, −z+3/2; (iv) −x+1, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C9H15NO4 |
Mr | 201.22 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 9.8364 (8), 5.9731 (5), 17.0805 (15) |
β (°) | 98.152 (5) |
V (Å3) | 993.40 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.24 × 0.22 × 0.18 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.975, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8624, 2431, 1446 |
Rint | 0.054 |
(sin θ/λ)max (Å−1) | 0.668 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.172, 1.04 |
No. of reflections | 2431 |
No. of parameters | 134 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.28, −0.19 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Acknowledgements
The authors acknowledge the SAIF, IIT, Madras, for the data collection.
References
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