organic compounds
5-[2,4-Dihydroxy-5-(5-hydroxy-2,4,6-trioxo-3,5-dihydro-1H-pyrimidin-5-yl)-3-methoxyphenyl]-5-hydroxy-3,5-dihydro-1H-pyrimidine-2,4,6-trione pentahydrate
aInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 9190401, Israel, and bDepartment of Chemistry, The Nuclear Research Centre Negev, Beer Sheva, 84190, Israel
*Correspondence e-mail: almog@mail.huji.ac.il
The title compound, C15H12N4O11·5H2O, has a `propeller-like' structure. The two alloxan units have screw-boat conformations. Their mean planes are normal to the central aromatic ring with dihedral angles of 87.91 (7) and 88.27 (7)°, and they are inclined to one another by 40.86 (7)°. In the crystal, molecules are linked via O—H⋯O and N—H⋯O hydrogen bonds, forming a three-dimensional framework. There are also C—H⋯O hydrogen bonds present within the framework.
Keywords: crystal structure; ion-pair recognition; alloxan; vasarene analogues; supramolecular ligand; hydrogen bonding; three-dimensional supramolecular structure.
CCDC reference: 1451787
Structure description
Vasarene and analogues are prepared by a one-pot reaction between cyclic vicinal polycarbonyl compounds, such as ninhydrin and benzo[f]ninhydrin (Almog et al., 2009), and polyhydroxy aromatics. Previous work by our group (Almog et al., 2009) has shown that the reaction with alloxan (1,3-dihydropyrimidine-2,4,5,6-tetrone) results in a partially closed, `propeller-like' structure, where the alloxan units are in a perpendicular and slightly tilted position (40–60°), due to the tetrahedral angle of the sp3 carbon atom of the alloxan attached to the central aromatic ring. Attempts to prepare bis-adducts with other polyhydroxy aromatics have also been successful, following a similar pattern. These compounds have shown promising potential for the challenging task of selective precipitation of certain alkali fluorides from aqueous solutions.
The molecular structure of the title compound is illustrated in Fig. 1. A selective methylation on the central hydroxyl group of the 1,2,3-benzenetriol molecule was performed prior to the one-pot reaction with alloxan. It can be used as a model for potential binding to a solid phase for future separation techniques.
The title compound, contains several oxygen and nitrogen functional groups (hydroxyls, carbonyls and amides) that are capable of forming multiple hydrogen bonds with protic solvent molecules (Table 1 and Figs. 2 and 3). This greatly enhances its solubility in water, thus enabling the selective binding and precipitation of the highly soluble heavy alkali fluorides from aqueous solutions, as shall be reported in a forthcoming article, and exhibiting promising potential as a new analytical method for salt-separation techniques. The `propeller-like' structure is established as non-hemiketal ring closure is allowed with a second carbonyl group, unlike the ninhydrin-based vasarene analogues (Almog et al., 2016). We suspect that this is due to two main factors: 1) the less reactive amidic carbonyls compared to the `true' on ninhydrin; 2) a greater ring strain when closing a six-membered ring compared to the five-membered ring of ninhydrin. Nevertheless, this structure is responsible for the greater flexibility of the ligand as opposed to the rigid ninhydrin-based vasarenes, assisting in the final complex formation with alkali fluoride ion-pairs.
Synthesis and crystallization
Alloxan monohydrate (329 mg, 2.05 mmol) and 2-methoxybenzene-1,3-diol (prepared according to a known procedure; Donnelly et al., 2008) (142 mg, 1.01 mmol) were stirred at room temperature in glacial acetic acid (10 ml) for 24 h. The white precipitate that formed was collected by vacuum filtration. The filtrate was left sealed and after a few days colourless crystals were formed. They were filtered onto sintered glass and washed with AcOH followed by diethyl ether (yield: 103 mg, 24%). Recrystallization (MeOH/H2O) afforded colourless crystals (m.p. > 473 K with decomposition). Analysis calculated for C15H12N4O11+2H2O: C, 39.14; H, 3.50; N, 12.17; found: C, 39.35; H, 3.29; N, 11.90; 1H NMR (DMSO-d6) δ (p.p.m.): 3.49 (s, 3H), 7.35 (br s, 2H), 7.62 (s, 1H), 9.45 (br s, 2H), 11.31 (br s, 4H); UV/Vis (DMSO): λmax = 282 nm. IR: ν = 494, 527, 606, 702, 793, 1020, 1132, 1246, 1348, 1411, 1479, 1699, 2842, 3101, 3209, 3300, 3373 cm−1; MS/MS positive mode ESI (m/z): 407.05 [(M + H) - H2O]+, 442.08 [M + NH4]+, 447.04 [M + Na]+, 871.09 [2M + Na]+.
Refinement
Crystal data, data collection and structure .
details are summarized in Table 2
|
Structural data
CCDC reference: 1451787
https://doi.org/10.1107/S2414314616002613/su4014sup1.cif
contains datablocks I, Global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2414314616002613/su4014Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2414314616002613/su4014Isup3.cml
Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C15H12N4O11·5H2O | Z = 2 |
Mr = 514.36 | F(000) = 536 |
Triclinic, P1 | Dx = 1.620 Mg m−3 |
a = 9.4495 (6) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.0608 (6) Å | Cell parameters from 6750 reflections |
c = 12.3484 (8) Å | θ = 2.3–27.9° |
α = 109.133 (1)° | µ = 0.15 mm−1 |
β = 91.964 (1)° | T = 295 K |
γ = 106.201 (1)° | Plate, colourless |
V = 1054.79 (11) Å3 | 0.43 × 0.36 × 0.26 mm |
Bruker APEXII CCD area-detector diffractometer | 4821 independent reflections |
Radiation source: fine-focus sealed tube | 4337 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
phi and ω scans | θmax = 27.9°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2010) | h = −12→12 |
Tmin = 0.939, Tmax = 0.962 | k = −13→13 |
12041 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: mixed |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0802P)2 + 0.3761P] where P = (Fo2 + 2Fc2)/3 |
4821 reflections | (Δ/σ)max < 0.001 |
381 parameters | Δρmax = 0.35 e Å−3 |
12 restraints | Δρmin = −0.44 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.21877 (13) | 0.03575 (13) | 0.36014 (11) | 0.0352 (3) | |
H1O | −0.219 (3) | 0.061 (3) | 0.429 (2) | 0.045 (6)* | |
O2 | −0.01468 (13) | 0.28905 (12) | 0.52758 (9) | 0.0303 (2) | |
O3 | 0.19179 (13) | 0.48136 (12) | 0.44958 (10) | 0.0327 (3) | |
H3O | 0.185 (3) | 0.489 (3) | 0.512 (2) | 0.045 (6)* | |
O4 | −0.20540 (13) | −0.03555 (12) | 0.01383 (9) | 0.0337 (3) | |
H4O | −0.252 (3) | −0.119 (3) | −0.034 (2) | 0.043 (6)* | |
O5 | −0.42159 (15) | 0.08106 (14) | 0.16241 (16) | 0.0562 (4) | |
O6 | −0.55723 (13) | −0.40618 (12) | 0.09977 (11) | 0.0396 (3) | |
O7 | −0.06530 (12) | −0.16599 (13) | 0.16113 (11) | 0.0362 (3) | |
O8 | 0.15820 (12) | 0.39213 (12) | 0.08897 (9) | 0.0313 (3) | |
H8O | 0.220 (3) | 0.451 (3) | 0.061 (2) | 0.052 (6)* | |
O9 | 0.37197 (14) | 0.28800 (13) | 0.16235 (12) | 0.0441 (3) | |
O10 | 0.55171 (16) | 0.72199 (15) | 0.45658 (14) | 0.0553 (4) | |
O11 | 0.12768 (13) | 0.64877 (13) | 0.23793 (11) | 0.0368 (3) | |
N1 | 0.45466 (15) | 0.49915 (14) | 0.31528 (12) | 0.0326 (3) | |
H1N | 0.540 (3) | 0.474 (3) | 0.324 (2) | 0.049 (6)* | |
N2 | 0.34045 (14) | 0.68507 (14) | 0.34510 (12) | 0.0302 (3) | |
H2N | 0.342 (2) | 0.778 (2) | 0.3814 (17) | 0.032 (5)* | |
N3 | −0.48738 (15) | −0.16430 (15) | 0.12230 (13) | 0.0335 (3) | |
H3N | −0.577 (3) | −0.174 (3) | 0.114 (2) | 0.048 (6)* | |
N4 | −0.31095 (14) | −0.28503 (14) | 0.12969 (11) | 0.0277 (3) | |
H4N | −0.297 (3) | −0.363 (3) | 0.128 (2) | 0.045 (6)* | |
C1 | −0.11481 (15) | 0.11043 (15) | 0.21253 (12) | 0.0235 (3) | |
C2 | −0.11630 (15) | 0.13784 (15) | 0.33064 (12) | 0.0246 (3) | |
C3 | −0.01410 (16) | 0.26189 (15) | 0.41090 (12) | 0.0240 (3) | |
C4 | 0.08900 (15) | 0.36102 (15) | 0.37351 (12) | 0.0234 (3) | |
C5 | 0.08942 (15) | 0.33507 (14) | 0.25529 (12) | 0.0225 (3) | |
C6 | −0.01113 (15) | 0.20805 (15) | 0.17600 (12) | 0.0231 (3) | |
H6 | −0.0086 | 0.1884 | 0.0972 | 0.028* | |
C7 | 0.0760 (2) | 0.2224 (2) | 0.57378 (15) | 0.0398 (4) | |
H7A | 0.0424 | 0.1174 | 0.5338 | 0.060* | |
H7B | 0.0688 | 0.2435 | 0.6547 | 0.060* | |
H7C | 0.1777 | 0.2617 | 0.5639 | 0.060* | |
C8 | −0.22382 (15) | −0.02921 (15) | 0.12904 (12) | 0.0241 (3) | |
C9 | −0.38477 (17) | −0.02905 (17) | 0.14319 (15) | 0.0322 (3) | |
C10 | −0.45805 (16) | −0.29232 (16) | 0.11523 (13) | 0.0274 (3) | |
C11 | −0.19071 (16) | −0.16394 (15) | 0.14372 (12) | 0.0246 (3) | |
C12 | 0.20492 (15) | 0.43398 (15) | 0.20782 (12) | 0.0237 (3) | |
C13 | 0.35182 (16) | 0.40093 (16) | 0.22442 (14) | 0.0288 (3) | |
C14 | 0.45360 (18) | 0.64053 (17) | 0.37814 (15) | 0.0337 (3) | |
C15 | 0.21882 (16) | 0.59811 (15) | 0.26550 (13) | 0.0259 (3) | |
O1W | 0.31872 (17) | −0.02845 (14) | 0.43957 (12) | 0.0440 (3) | |
H11W | 0.378 (3) | 0.062 (2) | 0.470 (2) | 0.087 (10)* | |
H21W | 0.275 (3) | −0.019 (3) | 0.3773 (18) | 0.066 (8)* | |
O2W | 0.71624 (15) | 0.40613 (14) | 0.31264 (11) | 0.0390 (3) | |
H12W | 0.679 (3) | 0.3131 (19) | 0.283 (2) | 0.080 (9)* | |
H22W | 0.753 (3) | 0.430 (3) | 0.258 (2) | 0.066 (8)* | |
O3W | 0.21039 (14) | 0.78324 (16) | 0.05355 (12) | 0.0430 (3) | |
H13W | 0.146 (3) | 0.780 (4) | 0.101 (2) | 0.090 (10)* | |
H23W | 0.209 (4) | 0.853 (3) | 0.032 (3) | 0.087 (10)* | |
O4W | 0.82549 (15) | 0.48740 (15) | 0.12591 (14) | 0.0452 (3) | |
H14W | 0.814 (3) | 0.405 (2) | 0.0736 (19) | 0.062 (7)* | |
H24W | 0.916 (2) | 0.526 (3) | 0.149 (2) | 0.072 (8)* | |
O5W | 0.2259 (3) | 0.0461 (3) | 0.2693 (2) | 0.0937 (7) | |
H15W | 0.2655 | 0.1234 | 0.2549 | 0.141* | |
H25W | 0.1306 | 0.0260 | 0.2546 | 0.141* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0381 (6) | 0.0301 (6) | 0.0288 (6) | −0.0037 (5) | 0.0073 (5) | 0.0110 (5) |
O2 | 0.0382 (6) | 0.0322 (6) | 0.0221 (5) | 0.0133 (5) | 0.0054 (4) | 0.0095 (4) |
O3 | 0.0358 (6) | 0.0262 (6) | 0.0229 (5) | −0.0038 (4) | −0.0025 (4) | 0.0035 (4) |
O4 | 0.0439 (6) | 0.0227 (5) | 0.0230 (5) | −0.0050 (5) | −0.0045 (4) | 0.0069 (4) |
O5 | 0.0354 (7) | 0.0264 (6) | 0.1024 (13) | 0.0103 (5) | −0.0032 (7) | 0.0175 (7) |
O6 | 0.0339 (6) | 0.0251 (6) | 0.0516 (7) | −0.0031 (5) | 0.0112 (5) | 0.0124 (5) |
O7 | 0.0270 (6) | 0.0313 (6) | 0.0468 (7) | 0.0080 (4) | −0.0018 (5) | 0.0108 (5) |
O8 | 0.0324 (6) | 0.0303 (6) | 0.0239 (5) | −0.0019 (4) | 0.0030 (4) | 0.0098 (4) |
O9 | 0.0341 (6) | 0.0246 (6) | 0.0579 (8) | 0.0095 (5) | −0.0037 (5) | −0.0049 (5) |
O10 | 0.0433 (7) | 0.0347 (7) | 0.0624 (9) | 0.0054 (6) | −0.0213 (6) | −0.0074 (6) |
O11 | 0.0351 (6) | 0.0326 (6) | 0.0456 (7) | 0.0140 (5) | 0.0026 (5) | 0.0148 (5) |
N1 | 0.0246 (6) | 0.0248 (6) | 0.0415 (7) | 0.0067 (5) | −0.0037 (5) | 0.0042 (5) |
N2 | 0.0304 (6) | 0.0172 (6) | 0.0357 (7) | 0.0038 (5) | 0.0015 (5) | 0.0031 (5) |
N3 | 0.0200 (6) | 0.0261 (7) | 0.0495 (8) | 0.0021 (5) | 0.0005 (5) | 0.0116 (6) |
N4 | 0.0300 (6) | 0.0179 (6) | 0.0345 (7) | 0.0049 (5) | 0.0050 (5) | 0.0103 (5) |
C1 | 0.0224 (6) | 0.0179 (6) | 0.0252 (7) | 0.0007 (5) | −0.0002 (5) | 0.0061 (5) |
C2 | 0.0244 (7) | 0.0208 (6) | 0.0274 (7) | 0.0039 (5) | 0.0047 (5) | 0.0094 (5) |
C3 | 0.0275 (7) | 0.0226 (6) | 0.0210 (6) | 0.0081 (5) | 0.0024 (5) | 0.0064 (5) |
C4 | 0.0235 (6) | 0.0188 (6) | 0.0239 (6) | 0.0040 (5) | −0.0013 (5) | 0.0047 (5) |
C5 | 0.0211 (6) | 0.0186 (6) | 0.0250 (6) | 0.0023 (5) | 0.0015 (5) | 0.0076 (5) |
C6 | 0.0234 (6) | 0.0200 (6) | 0.0218 (6) | 0.0020 (5) | 0.0005 (5) | 0.0063 (5) |
C7 | 0.0492 (10) | 0.0416 (9) | 0.0316 (8) | 0.0178 (8) | −0.0002 (7) | 0.0139 (7) |
C8 | 0.0239 (6) | 0.0182 (6) | 0.0254 (7) | 0.0000 (5) | −0.0009 (5) | 0.0076 (5) |
C9 | 0.0263 (7) | 0.0224 (7) | 0.0433 (9) | 0.0029 (6) | −0.0030 (6) | 0.0105 (6) |
C10 | 0.0278 (7) | 0.0216 (6) | 0.0278 (7) | 0.0011 (5) | 0.0063 (5) | 0.0073 (5) |
C11 | 0.0257 (7) | 0.0211 (6) | 0.0234 (6) | 0.0037 (5) | 0.0009 (5) | 0.0062 (5) |
C12 | 0.0207 (6) | 0.0190 (6) | 0.0254 (7) | 0.0007 (5) | 0.0004 (5) | 0.0050 (5) |
C13 | 0.0238 (7) | 0.0199 (6) | 0.0366 (8) | 0.0027 (5) | 0.0019 (6) | 0.0056 (6) |
C14 | 0.0273 (7) | 0.0242 (7) | 0.0391 (8) | 0.0019 (6) | −0.0016 (6) | 0.0031 (6) |
C15 | 0.0250 (7) | 0.0220 (6) | 0.0298 (7) | 0.0047 (5) | 0.0061 (5) | 0.0096 (5) |
O1W | 0.0566 (8) | 0.0268 (6) | 0.0403 (7) | 0.0062 (6) | 0.0070 (6) | 0.0066 (5) |
O2W | 0.0402 (7) | 0.0338 (6) | 0.0386 (7) | 0.0114 (5) | 0.0019 (5) | 0.0075 (5) |
O3W | 0.0336 (6) | 0.0498 (8) | 0.0502 (8) | 0.0137 (6) | 0.0053 (6) | 0.0228 (6) |
O4W | 0.0378 (7) | 0.0322 (7) | 0.0616 (9) | 0.0099 (5) | −0.0003 (6) | 0.0128 (6) |
O5W | 0.1022 (17) | 0.0852 (15) | 0.1002 (17) | 0.0286 (13) | −0.0120 (13) | 0.0437 (13) |
O1—C2 | 1.3563 (17) | N4—H4N | 0.82 (2) |
O1—H1O | 0.81 (3) | C1—C6 | 1.3827 (19) |
O2—C3 | 1.3762 (17) | C1—C2 | 1.394 (2) |
O2—C7 | 1.431 (2) | C1—C8 | 1.5059 (18) |
O3—C4 | 1.3518 (17) | C2—C3 | 1.3869 (19) |
O3—H3O | 0.75 (3) | C3—C4 | 1.3955 (19) |
O4—C8 | 1.4219 (17) | C4—C5 | 1.3966 (19) |
O4—H4O | 0.83 (2) | C5—C6 | 1.3904 (18) |
O5—C9 | 1.205 (2) | C5—C12 | 1.5314 (18) |
O6—C10 | 1.2133 (17) | C6—H6 | 0.9300 |
O7—C11 | 1.2042 (19) | C7—H7A | 0.9600 |
O8—C12 | 1.4046 (17) | C7—H7B | 0.9600 |
O8—H8O | 0.87 (3) | C7—H7C | 0.9600 |
O9—C13 | 1.2143 (19) | C8—C11 | 1.5369 (19) |
O10—C14 | 1.210 (2) | C8—C9 | 1.537 (2) |
O11—C15 | 1.2067 (19) | C12—C15 | 1.5339 (19) |
N1—C13 | 1.357 (2) | C12—C13 | 1.537 (2) |
N1—C14 | 1.382 (2) | O1W—H11W | 0.867 (17) |
N1—H1N | 0.92 (2) | O1W—H21W | 0.903 (16) |
N2—C15 | 1.3602 (19) | O2W—H12W | 0.846 (17) |
N2—C14 | 1.367 (2) | O2W—H22W | 0.843 (16) |
N2—H2N | 0.89 (2) | O3W—H13W | 0.861 (17) |
N3—C10 | 1.368 (2) | O3W—H23W | 0.833 (17) |
N3—C9 | 1.3692 (19) | O4W—H14W | 0.840 (16) |
N3—H3N | 0.82 (3) | O4W—H24W | 0.833 (17) |
N4—C11 | 1.3714 (18) | O5W—H15W | 0.8414 |
N4—C10 | 1.374 (2) | O5W—H25W | 0.8652 |
C2—O1—H1O | 111.7 (16) | O2—C7—H7C | 109.5 |
C3—O2—C7 | 113.68 (12) | H7A—C7—H7C | 109.5 |
C4—O3—H3O | 113.0 (18) | H7B—C7—H7C | 109.5 |
C8—O4—H4O | 111.3 (15) | O4—C8—C1 | 109.26 (11) |
C12—O8—H8O | 108.8 (16) | O4—C8—C11 | 107.57 (12) |
C13—N1—C14 | 125.29 (14) | C1—C8—C11 | 109.46 (11) |
C13—N1—H1N | 114.9 (14) | O4—C8—C9 | 106.24 (12) |
C14—N1—H1N | 118.6 (15) | C1—C8—C9 | 110.79 (12) |
C15—N2—C14 | 126.12 (13) | C11—C8—C9 | 113.36 (11) |
C15—N2—H2N | 115.7 (13) | O5—C9—N3 | 121.38 (15) |
C14—N2—H2N | 118.0 (13) | O5—C9—C8 | 122.43 (14) |
C10—N3—C9 | 126.54 (14) | N3—C9—C8 | 115.94 (13) |
C10—N3—H3N | 113.5 (16) | O6—C10—N3 | 121.61 (14) |
C9—N3—H3N | 119.9 (16) | O6—C10—N4 | 121.50 (14) |
C11—N4—C10 | 126.23 (13) | N3—C10—N4 | 116.86 (12) |
C11—N4—H4N | 119.2 (16) | O7—C11—N4 | 121.48 (14) |
C10—N4—H4N | 114.6 (16) | O7—C11—C8 | 121.78 (13) |
C6—C1—C2 | 119.54 (12) | N4—C11—C8 | 116.65 (12) |
C6—C1—C8 | 122.37 (13) | O8—C12—C5 | 107.70 (11) |
C2—C1—C8 | 118.05 (12) | O8—C12—C15 | 108.11 (12) |
O1—C2—C3 | 123.45 (13) | C5—C12—C15 | 112.28 (11) |
O1—C2—C1 | 116.33 (12) | O8—C12—C13 | 109.21 (12) |
C3—C2—C1 | 120.20 (12) | C5—C12—C13 | 106.52 (11) |
O2—C3—C2 | 120.41 (13) | C15—C12—C13 | 112.87 (11) |
O2—C3—C4 | 119.60 (12) | O9—C13—N1 | 121.36 (14) |
C2—C3—C4 | 119.98 (13) | O9—C13—C12 | 121.34 (13) |
O3—C4—C3 | 121.33 (13) | N1—C13—C12 | 117.20 (13) |
O3—C4—C5 | 118.67 (12) | O10—C14—N2 | 121.94 (15) |
C3—C4—C5 | 119.98 (12) | O10—C14—N1 | 120.89 (16) |
C6—C5—C4 | 119.25 (12) | N2—C14—N1 | 117.13 (14) |
C6—C5—C12 | 117.72 (12) | O11—C15—N2 | 121.43 (14) |
C4—C5—C12 | 122.83 (12) | O11—C15—C12 | 120.95 (13) |
C1—C6—C5 | 121.01 (13) | N2—C15—C12 | 117.57 (13) |
C1—C6—H6 | 119.5 | H11W—O1W—H21W | 97.9 (19) |
C5—C6—H6 | 119.5 | H12W—O2W—H22W | 103 (2) |
O2—C7—H7A | 109.5 | H13W—O3W—H23W | 106 (2) |
O2—C7—H7B | 109.5 | H14W—O4W—H24W | 107 (2) |
H7A—C7—H7B | 109.5 | H15W—O5W—H25W | 107.1 |
C6—C1—C2—O1 | −178.56 (13) | C9—N3—C10—N4 | −0.5 (2) |
C8—C1—C2—O1 | −0.9 (2) | C11—N4—C10—O6 | 177.64 (14) |
C6—C1—C2—C3 | −0.2 (2) | C11—N4—C10—N3 | −4.1 (2) |
C8—C1—C2—C3 | 177.40 (13) | C10—N4—C11—O7 | 176.55 (14) |
C7—O2—C3—C2 | 88.96 (17) | C10—N4—C11—C8 | −6.9 (2) |
C7—O2—C3—C4 | −91.82 (17) | O4—C8—C11—O7 | 79.73 (16) |
O1—C2—C3—O2 | −1.5 (2) | C1—C8—C11—O7 | −38.88 (18) |
C1—C2—C3—O2 | −179.69 (12) | C9—C8—C11—O7 | −163.12 (14) |
O1—C2—C3—C4 | 179.28 (13) | O4—C8—C11—N4 | −96.79 (14) |
C1—C2—C3—C4 | 1.1 (2) | C1—C8—C11—N4 | 144.60 (13) |
O2—C3—C4—O3 | 2.1 (2) | C9—C8—C11—N4 | 20.35 (18) |
C2—C3—C4—O3 | −178.71 (13) | C6—C5—C12—O8 | 15.20 (17) |
O2—C3—C4—C5 | −179.37 (12) | C4—C5—C12—O8 | −170.04 (13) |
C2—C3—C4—C5 | −0.1 (2) | C6—C5—C12—C15 | 134.11 (13) |
O3—C4—C5—C6 | 176.98 (13) | C4—C5—C12—C15 | −51.12 (18) |
C3—C4—C5—C6 | −1.6 (2) | C6—C5—C12—C13 | −101.87 (14) |
O3—C4—C5—C12 | 2.3 (2) | C4—C5—C12—C13 | 72.90 (16) |
C3—C4—C5—C12 | −176.31 (13) | C14—N1—C13—O9 | 168.41 (17) |
C2—C1—C6—C5 | −1.6 (2) | C14—N1—C13—C12 | −15.2 (2) |
C8—C1—C6—C5 | −179.10 (13) | O8—C12—C13—O9 | −40.9 (2) |
C4—C5—C6—C1 | 2.5 (2) | C5—C12—C13—O9 | 75.12 (18) |
C12—C5—C6—C1 | 177.45 (13) | C15—C12—C13—O9 | −161.22 (15) |
C6—C1—C8—O4 | −3.02 (19) | O8—C12—C13—N1 | 142.66 (14) |
C2—C1—C8—O4 | 179.41 (12) | C5—C12—C13—N1 | −101.29 (15) |
C6—C1—C8—C11 | 114.53 (15) | C15—C12—C13—N1 | 22.37 (19) |
C2—C1—C8—C11 | −63.03 (17) | C15—N2—C14—O10 | −173.69 (17) |
C6—C1—C8—C9 | −119.74 (15) | C15—N2—C14—N1 | 8.6 (2) |
C2—C1—C8—C9 | 62.70 (17) | C13—N1—C14—O10 | −178.46 (17) |
C10—N3—C9—O5 | −170.40 (18) | C13—N1—C14—N2 | −0.7 (3) |
C10—N3—C9—C8 | 15.2 (2) | C14—N2—C15—O11 | −176.55 (16) |
O4—C8—C9—O5 | −80.4 (2) | C14—N2—C15—C12 | 0.8 (2) |
C1—C8—C9—O5 | 38.1 (2) | O8—C12—C15—O11 | 40.69 (18) |
C11—C8—C9—O5 | 161.66 (17) | C5—C12—C15—O11 | −77.98 (17) |
O4—C8—C9—N3 | 93.87 (16) | C13—C12—C15—O11 | 161.60 (14) |
C1—C8—C9—N3 | −147.57 (14) | O8—C12—C15—N2 | −136.70 (13) |
C11—C8—C9—N3 | −24.05 (19) | C5—C12—C15—N2 | 104.63 (14) |
C9—N3—C10—O6 | 177.74 (16) | C13—C12—C15—N2 | −15.78 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O1Wi | 0.81 (3) | 1.97 (2) | 2.6935 (18) | 148 (2) |
O3—H3O···O2 | 0.75 (3) | 2.41 (2) | 2.7788 (16) | 112 (2) |
O3—H3O···O2Wii | 0.75 (3) | 2.12 (3) | 2.7849 (18) | 147 (2) |
O4—H4O···O9iii | 0.83 (2) | 1.93 (2) | 2.7520 (16) | 168 (2) |
O8—H8O···O6iv | 0.87 (3) | 2.13 (2) | 2.8495 (16) | 140 (2) |
O8—H8O···O4Wv | 0.87 (3) | 2.63 (3) | 3.2504 (19) | 129 (2) |
N1—H1N···O2W | 0.92 (2) | 1.97 (2) | 2.8746 (19) | 169 (2) |
N2—H2N···O1Wvi | 0.89 (2) | 1.92 (2) | 2.8023 (18) | 170.2 (18) |
N3—H3N···O3Wvii | 0.82 (3) | 2.00 (3) | 2.8026 (19) | 167 (2) |
N4—H4N···O4Wvii | 0.82 (2) | 2.13 (2) | 2.9134 (19) | 158 (2) |
O1W—H11W···O10ii | 0.87 (2) | 1.97 (2) | 2.8006 (18) | 161 (3) |
O1W—H21W···O5W | 0.90 (2) | 1.77 (2) | 2.651 (3) | 164 (2) |
O2W—H12W···O5viii | 0.85 (2) | 2.23 (2) | 3.0518 (19) | 165 (3) |
O2W—H22W···O4W | 0.84 (2) | 1.98 (2) | 2.825 (2) | 175 (3) |
O3W—H13W···O7vi | 0.86 (2) | 2.30 (2) | 3.0573 (18) | 147 (3) |
O3W—H13W···O11 | 0.86 (2) | 2.44 (2) | 3.0292 (19) | 126 (3) |
O3W—H23W···O4ix | 0.83 (2) | 2.10 (2) | 2.9303 (18) | 178 (3) |
O4W—H14W···O3Wv | 0.84 (2) | 1.97 (2) | 2.814 (2) | 178 (3) |
O4W—H24W···O11viii | 0.83 (2) | 2.08 (2) | 2.8937 (18) | 168 (3) |
O5W—H15W···O9 | 0.84 | 2.34 | 3.151 (3) | 164 |
O5W—H25W···O7 | 0.87 | 2.21 | 2.918 (3) | 139 |
C7—H7B···O7i | 0.96 | 2.63 | 3.501 (2) | 151 |
C7—H7B···O11x | 0.96 | 2.59 | 3.242 (2) | 125 |
C7—H7C···O10ii | 0.96 | 2.54 | 3.458 (2) | 159 |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x+1, −y+1, −z+1; (iii) −x, −y, −z; (iv) x+1, y+1, z; (v) −x+1, −y+1, −z; (vi) x, y+1, z; (vii) x−1, y−1, z; (viii) x+1, y, z; (ix) −x, −y+1, −z; (x) −x, −y+1, −z+1. |
Acknowledgements
This research was supported by the Pazy Research Foundation.
References
Almog, J., Bengiat, R., Gil, M., Klein, A., Cohen, O., Bogoslavski, B., Cohen, S. & Dubnikova, F. (2016). Tetrahedron. Submitted. Google Scholar
Almog, J., Rozin, R., Klein, A., Shamuilov-Levinton, G. & Cohen, S. (2009). Tetrahedron, 65, 7954–7962. Web of Science CSD CrossRef CAS Google Scholar
Bruker (2010). APEX2, SAINT, and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Donnelly, A. C., Mays, J. R., Burlison, J., Nelson, J. T., Vielhauer, G., Holzbeierlein, J. & Blagg, B. S. J. (2008). J. Org. Chem. 73, 8901–8920. CrossRef PubMed CAS Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
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