organic compounds
Diethyl 2,2′-({[1,4-phenylenebis(azanediyl)]bis(methylene)}bis(1H-pyrrole-2,1-diyl))diacetate
aDepartment of Chemistry, College of Education for Pure Science, University of Basrah, Iraq, bSchool of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, England, and cDepartment of Chemistry, College of Education (Ibn Al-Haitham) for Pure Science, University of Baghdad, Iraq
*Correspondence e-mail: mohamadaljeboori@yahoo.com
The complete molecule of the title compound, C24H30N4O4, is generated by crystallographic inversion symmetry. The molecule is S-shaped and the pyrrole groups have an anti or trans confirmation with respect to the central benzene ring, to which they are inclined by 76.38 (9)°. In the crystal, molecules are linked via C—H⋯O hydrogen bonds, forming layers parallel to the ac plane. Within the layers there are C—H⋯π interactions present. There are, however, no significant interactions between the layers.
Keywords: crystal structure; bis(pyrrole ester); bis(secondary amine); C-H⋯O hydrogen bonding; C—H⋯π interactions..
CCDC reference: 1446459
Structure description
The preparation of the title secondary amine was based on three synthetic steps. The reaction of 1H-pyrrole-2-carbaldehyde with ethyl bromoproacetate resulted in the formation of ethyl(2-formyl-1H-pyrrole-1-yl)-acetate (Koriatopoulou et al., 2008; Singh & Pal, 2010). The reaction of two moles of the above with p-phenylenediamine (Yang et al., 2004; Ourari et al., 2013) gave the Schiff base. The reduction of the Schiff base (Higuchi et al., 2003; Nabipour et al., 2010) gave the the title secondary amine.
The whole molecule of the title compound, Fig. 1, is generated by inversion symmetry. The pyrrole rings have an anti or trans-conformation with respect to the central benzene ring. They are inclined to the central benzene ring by 76.38 (9)°.
The infrared spectrum shows typical absorption bands of the functional N—H and carbonyl –C=O bonds at 3390 and 1630 cm−1, respectively. The N7—C6 bond distance of 1.448 (2) Å is longer than the N7—C8 bond distance of 1.405 (2) Å, indicating single bond order. However, the N1—C5 bond distance of 1.371 (2) Å, confirms that a resonance occurs in the pyrrole system between the lone-pair electron of the N atom and the pyrrole ring.
In the crystal, molecules are linked via C—H⋯O hydrogen bonds, forming layers parallel to the ac plane (Table 1 and Fig. 2). Within the layers there are C—H⋯π interactions present. There are no significant interactions between the layers (Fig. 3).
Synthesis and crystallization
The title compound was synthesized in three steps.
1: ethyl (2-formyl-1H-pyrrole-1-yl)-acetate was prepared by reported procedures (Koriatopoulou et al., 2008; Singh & Pal, 2010). To a mixture of 1H-pyrrole-2-carbaldehyde (1.00 g, 10.51 mmol), K2CO3 (2.90 g, 21.02 mmol) and (2.64 g, 10.51 mmol) of 18-crown-6 in dry 1,4-dioxane (20 ml) was added a solution of ethyl bromoacetate (2.00 g, 12 mmol) in dry 1,4-dioxane (20 ml) drop wise over a period of 30 min. The reaction mixture was allowed to reflux under nitrogen atmosphere for 6 h, and then the solvent was removed under reduced pressure. Water (50 ml) was added to the residue, and the mixture was extracted with ethyl acetate (3 × 15 ml). The combined organic layers were washed with brine (15 ml), and then dried over Na2SO4. The solvent was removed under reduced pressure, and the oily residue was purified by flash with an mixture (33% ethyl acetate/hexane), yielding the title compound as a yellow oil (yielded: 0.75 g, 75%). IR (ATR cm−1): 1650 ν(C=O) aldehyde moiety. 1710 ν(C=O) ester group. 1H (500 MHz, CDCl3, p.p.m.): 1.20 (3H, t, C1—H), 4.15 (2H, q, C2—H), 4.97 (2H, s, C4—H), 6.21 (1H, t, C6—H), 6.84 (1H, d, C7—H), 6.90 (1H, d, C5—H) and 9.45 (1H, s, C9—H). 13C (125.75 MHz, CDCl3), 14.13 C1, 50.25 C4, 61.63 C2, 110.20 C6, 124.61 C7, 131.71 C8 and 132.10 C5. C=O to the carboxylate moiety 168.37 C9 and 179.74 C3, respectively. The positive ES at m/z = 182.4 (M + H)+ (62%) for C9H11NO3, requires = 181.1. The other peaks detected at m/z = 153.4 (100%), 109.3 (6%), 95 (9%) and 67 (4%) correspond to [M − CH2CH3]+, M − (CH2CH3 + CO2)]+, [M − (CH2CH3 + CO2 + CH2)]+ and [M − (CH2CH3 + CO2 + CH2 + CO)]+, respectively.
2: Synthesis of the title Schiff base was achieved using standard procedures (Koriatopoulou et al., 2008; Singh & Pal, 2010). To a mixture of ethyl (2-formyl-1H-pyrrole-1-yl)acetate (1.81 g, 10 mmol) in ethanol (20 ml) with 3 drops of glacial acetic acid, a solution of 1,4-phenylenediamine (0.5 g, 5 mmol) in ethanol (20 ml) was added drop wise over a period of 20 min. The reaction mixture was allowed to reflux for 3 h, and then cooled to room temperature. A yellow precipitate was collected by filtration and recrystallized from ethanol, yield 1.18 g (65%). IR (cm-1): 1600 ν(C=N), 1685 ν(C=O). NMR: 1H (500 MHz, CDCl3, p.p.m.): 1.17 (6H, t, C1, 1–H), 4.14 (4H, Q, C2, 2–H), 5.15 (4H, s, C4, 4–H), 6.20 (2H, t, C6, 6–H), 6.61 (2H, d, C7, 7–H), 6.74 (2H, d, C5, 5–H), 7.05 (4H, s, C11, 11-, C12, 12–H) and 8.26 (2H, s, C9, 9–H). 13C (125.75 MHz, CDCl3): 14.26 (C1, 1-), 51.36 (C4, 4-), 61.30 (C2, 2-.), 109.39 (C5, 5-), 119.54 (C7, 7-), 121.48 (C11, 11-, C12, 12-), 129.26 (C6, 6-), 130.31 (C8, 8-), 149.19 (C9, 9-) and 149.23 (C10, 10-). C=O of the carboxylate moiety 169.25 C3, 3-. The positive ES at m/z = 435.8 (M + H)+ (100%) for C24H26N4O4, requires = 434.5. The other peaks detected at m/z = 406 (100%), 377 (22%), 289 (3%) and 261.1 (10%) correspond to [M − CH2CH3]+, [M − (2CH2CH3)]+, [M − (2CH2CH3 + 2CO2)]+ and [M (2CH2CH3 + 2CO2 + 2CH2)]+, respectively.
3: The title compound was obtained by reduction of the Schiff base following reported procedures (Higuchi et al., 2003; Nabipour et al., 2010). A mixture of diethyl 2,2′-{2,2′-(1Z)-[1,4-phenylenebis(azan-1-yl-1-ylidene)]bis(methan-1-yl-1-ylidene)bis(1H-pyrrole-2,1-diyl)} diacetate (0.43 g, 1 mmol) and SnCl2 (0.45 g, 2 mmol) in a (1:1) molar ratio mixture of dichloromethane/acetonitrile (100 ml), was added to a solution of sodium borohydrate in 1:1 dichloromethane/acetonitrile (0.38 g. 5 mmol) drop wise over a period of 10 min. The mixture was stirred under nitrogen for 1 h at room temperature, and then washed for four times with 1% triethylamine. The organic layer was dried over sodium sulfate and the solvent removed under reduced pressure. A colourless solid was collected by filtration (yield: 0.17 g, 40%). IR (KBr disc, cm−1) 3390 (N—H), 1630 (C=O). NMR: 1H (500 MHz, CDCl3, p.p.m.): 1.15 (6H, t,C1,1–H), 4.04 (4H, s, C9,9–H), 4.09 (4H, q, C2, 2–H), 4.60 (4H, s, C4, 4–H), 6.06 (2H, d, C6, 6-H, C7, 7–H), 6.49 (4H, s, C11, 11- and C12, 12–H), 6.56 (2H, d, C5, 5–H) and 3.29 to NH. 13C (125.75 MHz, CDCl3, p.p.m.): 14.31 (C1, 1-), 41.81 (C2, 2-), 51.38 (C4, 4-), 61.40 (C9, 9-), 107.63 (C7, 7-), 109.22 (C6, 6-), 116.71 (C11, 11), 116.78 (C12, 12-), 122.97 (C5, 5-), 130.65 (C8, 8-)and 140.90 (C10, 10-). C=O 159.45 (C3,3-). The positive ES at m/z = 439(M + H)+ (78%) for C24H30N4O4, requires = 438.22. The other peaks detected at m/z = 410 (3%), 366 (2%), 337 (4%), 293 (12%) and 265(7%) correspond to [M − (CH2CH3)]+, [M − (CH2CH3 + CO2)]+, [M − (2CH2CH3 + CO2)]+, [M − (2CH2CH3 + 2CO2]+ and [M − (2CH2CH3 + 2CO2 + 2CH2)]+, respectively. Crystals for the X-ray diffraction study were obtained by recrystallization from a mixture of the title compound in dichlorometane/acetonitrile, in air at 291 K.
Refinement
Crystal data, data collection and structure . The NH H atom, attached to atom N7, was located in a difference Fourier map and freely refined.
details are summarized in Table 2
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Structural data
CCDC reference: 1446459
10.1107/S2414314616000468/su4008sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2414314616000468/su4008Isup2.hkl
The title compound was synthesized in three steps.
1: ethyl (2-formyl-1H-pyrrole-1-yl)-acetate was prepared by reported procedures (Koriatopoulou et al., 2008; Singh & Pal, 2010). To a mixture of 1H-pyrrole-2-carbaldehyde (1.00 g, 10.51 mmol), K2CO3 (2.90 g, 21.02 mmol) and (2.64 g, 10.51 mmol) of 18-crown-6 in dry 1,4-dioxane (20 ml) was added a solution of ethyl bromoacetate (2.00 g, 12 mmol) in dry 1,4-dioxane (20 ml) drop wise over a period of 30 min. The reaction mixture was allowed to reflux under nitrogen atmosphere for 6 h, and then the solvent was removed under reduced pressure. Water (50 ml) was added to the residue, and the mixture was extracted with ethyl acetate (3 × 15 ml). The combined organic layers were washed with brine (15 ml), and then dried over Na2SO4. The solvent was removed under reduced pressure, and the oily residue was purified by flash ν(C=O) aldehyde moiety. 1710 ν(C=O) ester group. 1H (500 MHz, CDCl~3~, p.p.m.): 1.20 (3H, t, C1—H), 4.15 (2H, q, C2—H), 4.97 (2H, s, C4—H), 6.21 (1H, t, C6—H), 6.84 (1H, d, C7—H), 6.90 (1H, d, C5—H) and 9.45 (1H, s, C9—H). 13C (125.75 MHz, CDCl~3~), 14.13 C1, 50.25 C4, 61.63 C2, 110.20 C6, 124.61 C7, 131.71 C8 and 132.10 C5. C=O to the carboxylate moiety 168.37 C9 and 179.74 C3, respectively. The positive ES at m/z = 182.4 (M + H)+ (62%) for C9H11NO3, requires = 181.1. The other peaks detected at m/z =153.4 (100%), 109.3 (6%), 95 (9%) and 67 (4%) correspond to [M - CH2CH3]+, M - (CH2CH3 + CO2)]+, [M - (CH2CH3 + CO2 + CH2)]+ and [M - (CH2CH3 + CO2 + CH2 + CO)]+, respectively.
with an mixture (33% ethyl acetate/hexane), yielding the title compound as a yellow oil (yielded: 0.75 g, 75%). IR (ATR cm−1): 16502: Synthesis of the title Schiff base was achieved using standard procedures (Koriatopoulou et al., 2008; Singh & Pal, 2010). To a mixture of ethyl (2-formyl-1H-pyrrole-1-yl)-acetate (1.81 g, 10 mmol) in ethanol (20 ml) with 3 drops of glacial acetic acid, a solution of 1,4-phenylenediamine (0.5 g, 5 mmol) in ethanol (20 ml) was added drop wise over a period of 20 min. The reaction mixture was allowed to reflux for 3 h, and then cooled to room temperature. A yellow precipitate was collected by filtration and recrystallized from ethanol, yield 1.18 g (65%). IR (cm-1): 1600 ν(C=N), 1685 ν(C=O). NMR: 1H (500 MHz, CDCl3, p.p.m.): 1.17 (6H, t, C1, 1–H), 4.14 (4H, Q, C2, 2–H), 5.15 (4H, s, C4, 4–H), 6.20 (2H, t, C6, 6–H), 6.61 (2H, d, C7, 7–H), 6.74 (2H, d, C5, 5–H), 7.05 (4H, s, C11, 11-, C12, 12–H) and 8.26 (2H, s, C9, 9–H). 13C (125.75 MHz, CDCl3): 14.26 (C1, 1-), 51.36 (C4, 4-), 61.30 (C2, 2-.), 109.39 (C5, 5-), 119.54 (C7, 7-), 121.48 (C11, 11-, C12, 12-), 129.26 (C6, 6-), 130.31 (C8, 8-), 149.19 (C9, 9-) and 149.23 (C10, 10-). C=O of the carboxylate moiety 169.25 C3, 3-. The positive ES at m/z = 435.8 (M + H)+ (100%) for C24H26N4O4, requires = 434.5. The other peaks detected at m/z = 406 (100%), 377 (22%), 289 (3%) and 261.1 (10%) correspond to [M - CH2CH3]+, [M - (2CH2CH3)]+, [M - (2CH2CH3 + 2CO2)]+ and [M - (2CH2CH3 + 2CO2 + 2CH2)]+, respectively.
3: The title compound was obtained by reduction of the Schiff base following reported procedures (Higuchi et al., 2003; Nabipour et al., 2010). A mixture of diethyl 2,2'-(2,2'-(1Z)-(1,4-phenylenebis (azan-1-yl-1-ylidene)) bis(methan-1-yl-1-ylidene) bis (1H-pyrrole-2,1-diyl)) diacetate (0.43 g, 1 mmol) and SnCl2 (0.45 g, 2 mmol) in a (1:1) molar ratio mixture of dichloromethane/acetonitrile (100 ml), was added to a solution of sodium borohydrate in 1:1 dichloromethane/acetonitrile (0.38 g. 5 mmol) drop wise over a period of 10 min. The mixture was stirred under nitrogen for 1 h at room temperature, and then washed for four times with 1% triethylamine. The organic layer was dried over sodium sulfate and the solvent removed under reduced pressure. A colourless solid was collected by filtration (yield: 0.17 g, 40%). IR (KBr disc, cm−1) 3390 (N—H), 1630 (C=O). NMR: 1H (500 MHz, CDCl~3~, p.p.m.): 1.15 (6H, t,C1,1–H), 4.04 (4H, s, C9,9–H), 4.09 (4H, q, C2, 2–H), 4.60 (4H, s, C4, 4–H), 6.06 (2H, d, C6, 6-H, C7, 7–H), 6.49 (4H, s, C11, 11- and C12, 12–H), 6.56 (2H, d, C5, 5–H) and 3.29 to NH. 13C (125.75 MHz, CDCl3, p.p.m.): 14.31 (C1, 1-), 41.81 (C2, 2-), 51.38 (C4, 4-), 61.40 (C9, 9-), 107.63 (C7, 7-), 109.22 (C6, 6-), 116.71 (C11, 11), 116.78 (C12, 12-), 122.97 (C5, 5-), 130.65 (C8, 8-)and 140.90 (C10, 10-). C=O 159.45 (C3,3-). The positive ES
at m/z = 439(M+H)+ (78%) for C24H30N4O4, requires = 438.22. The other peaks detected at m/z = 410 (3%), 366 (2%), 337 (4%), 293 (12%) and 265(7%) correspond to [M - (CH2CH3)]+, [M - (CH2CH3 + CO2)]+, [M - (2CH2CH3 + CO2)]+, [M - (2CH2CH3 + 2CO2]+ and [M - (2CH2CH3 + 2CO2 + 2CH2)]+, respectively. Crystals for the X-ray diffraction study were obtained by recrystallization from a mixture of the title compound in dichlorometane/acetonitrile, in air at 291 K.Crystal data, data collection and structure
details are summarized in Table 2. The NH H atom, attached to atom N7, was located in a difference Fourier map and freely refined.The preparation of the title secondary amine was based on three synthetic steps. The reaction of 1H-pyrrole-2-carbaldehyde with ethyl bromoproacetate resulted in the formation of ethyl(2-formyl-1H-pyrrole-1-yl)-acetate (Koriatopoulou et al., 2008; Singh & Pal, 2010). The reaction of two moles of the above with p-phenylenediamine (Yang et al., 2004; Ourari et al., 2013) gave the Schiff base. The reduction of the Schiff base (Higuchi et al., 2003; Nabipour et al., 2010) gave the the title secondary amine.
The whole molecule of the title compound, Fig. 1, is generated by inversion symmetry. The pyrrole rings have an anti or trans-conformation with respect to the central benzene ring. They are inclined to the central benzene ring by 76.38 (9)°.
The infrared spectrum shows typical absorption bands of the functional N—H and carbonyl –C═O bonds at 3390 and 1630 cm−1, respectively. The N7—C6 bond distance of 1.448 (2) Å is longer than the N7—C8 bond distance of 1.405 (2) Å, indicating single bond order. However, the N1—C5 bond distance of 1.371 (2) Å, confirms that a resonance occurs in the pyrrole system between the lone-pair electron of the N atom and the pyrrole ring.
In the crystal, molecules are linked via C—H···O hydrogen bonds, forming layers parallel to the ac plane (Table 1 and Fig. 2). Within the layers there are C—H···π interactions present. There are no significant interactions between the layers (Fig. 3).
Data collection: CrysAlis PRO (Agilent, 2013); cell
CrysAlis PRO (Agilent, 2013); data reduction: CrysAlis PRO (Agilent, 2013); program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009), SHELXL2014 (Sheldrick, 2015).Fig. 1. A view of the molecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The unlabelled atoms are related to labelled atoms by the symmetry operation − x + 2, − y, − z + 1. | |
Fig. 2. A view along the b axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1). For clarity only the H atoms involved in the intermolecular contacts have been included. | |
Fig. 3. A view along the c axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1). For clarity only the H atoms involved in the intermolecular contacts have been included. |
C24H30N4O4 | F(000) = 468 |
Mr = 438.52 | Dx = 1.260 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 8.1476 (2) Å | Cell parameters from 5079 reflections |
b = 17.6289 (4) Å | θ = 3.4–24.1° |
c = 8.8692 (3) Å | µ = 0.09 mm−1 |
β = 114.835 (4)° | T = 150 K |
V = 1156.10 (6) Å3 | Block, colourless |
Z = 2 | 0.4 × 0.3 × 0.3 mm |
Agilent SuperNova, Single source at offset, Atlas diffractometer | 2992 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 1926 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.058 |
Detector resolution: 10.3705 pixels mm-1 | θmax = 29.5°, θmin = 2.9° |
ω scans | h = −11→10 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | k = −24→23 |
Tmin = 0.666, Tmax = 1.000 | l = −12→12 |
19988 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: mixed |
wR(F2) = 0.135 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0512P)2 + 0.3701P] where P = (Fo2 + 2Fc2)/3 |
2992 reflections | (Δ/σ)max < 0.001 |
150 parameters | Δρmax = 0.23 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C24H30N4O4 | V = 1156.10 (6) Å3 |
Mr = 438.52 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.1476 (2) Å | µ = 0.09 mm−1 |
b = 17.6289 (4) Å | T = 150 K |
c = 8.8692 (3) Å | 0.4 × 0.3 × 0.3 mm |
β = 114.835 (4)° |
Agilent SuperNova, Single source at offset, Atlas diffractometer | 2992 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | 1926 reflections with I > 2σ(I) |
Tmin = 0.666, Tmax = 1.000 | Rint = 0.058 |
19988 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.135 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.23 e Å−3 |
2992 reflections | Δρmin = −0.23 e Å−3 |
150 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O13 | 0.4133 (2) | −0.08680 (7) | 0.32272 (16) | 0.0505 (4) | |
O16 | 0.30365 (17) | −0.04392 (8) | 0.06056 (15) | 0.0453 (4) | |
N1 | 0.27770 (17) | 0.10235 (8) | 0.17147 (17) | 0.0329 (3) | |
N7 | 0.66678 (18) | 0.05720 (8) | 0.26714 (19) | 0.0324 (3) | |
H7 | 0.651 (3) | 0.0463 (11) | 0.166 (3) | 0.045 (6)* | |
C2 | 0.4147 (2) | 0.14531 (9) | 0.1631 (2) | 0.0309 (4) | |
C3 | 0.3366 (2) | 0.19677 (10) | 0.0379 (2) | 0.0359 (4) | |
H3 | 0.3986 | 0.2340 | 0.0042 | 0.043* | |
C4 | 0.1478 (2) | 0.18484 (10) | −0.0325 (2) | 0.0403 (4) | |
H4 | 0.0597 | 0.2125 | −0.1217 | 0.048* | |
C5 | 0.1156 (2) | 0.12641 (10) | 0.0511 (2) | 0.0387 (4) | |
H5 | 0.0003 | 0.1057 | 0.0299 | 0.046* | |
C6 | 0.6077 (2) | 0.13331 (9) | 0.2811 (2) | 0.0337 (4) | |
H6A | 0.6848 | 0.1705 | 0.2572 | 0.040* | |
H6B | 0.6217 | 0.1420 | 0.3961 | 0.040* | |
C8 | 0.83593 (19) | 0.03144 (9) | 0.38338 (19) | 0.0273 (4) | |
C9 | 0.9039 (2) | −0.03605 (9) | 0.3509 (2) | 0.0302 (4) | |
H9 | 0.8393 | −0.0611 | 0.2479 | 0.036* | |
C10 | 0.9362 (2) | 0.06744 (9) | 0.53483 (19) | 0.0300 (4) | |
H10 | 0.8944 | 0.1140 | 0.5597 | 0.036* | |
C11 | 0.3011 (2) | 0.03733 (10) | 0.2779 (2) | 0.0356 (4) | |
H11A | 0.1900 | 0.0300 | 0.2956 | 0.043* | |
H11B | 0.4023 | 0.0472 | 0.3873 | 0.043* | |
C12 | 0.3398 (2) | −0.03424 (10) | 0.2052 (2) | 0.0352 (4) | |
C14 | 0.4517 (4) | −0.16067 (13) | 0.2705 (3) | 0.0762 (8) | |
H14A | 0.4647 | −0.1555 | 0.1650 | 0.091* | |
H14B | 0.3505 | −0.1960 | 0.2520 | 0.091* | |
C15 | 0.6209 (4) | −0.19104 (13) | 0.4013 (4) | 0.0742 (8) | |
H15A | 0.6428 | −0.2422 | 0.3705 | 0.111* | |
H15B | 0.6099 | −0.1931 | 0.5071 | 0.111* | |
H15C | 0.7222 | −0.1579 | 0.4129 | 0.111* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O13 | 0.0797 (10) | 0.0383 (7) | 0.0357 (7) | 0.0102 (7) | 0.0263 (7) | 0.0031 (6) |
O16 | 0.0497 (8) | 0.0538 (8) | 0.0283 (7) | −0.0077 (6) | 0.0123 (6) | −0.0049 (6) |
N1 | 0.0286 (7) | 0.0376 (8) | 0.0291 (8) | 0.0010 (6) | 0.0087 (6) | 0.0030 (6) |
N7 | 0.0271 (7) | 0.0374 (8) | 0.0270 (8) | 0.0027 (6) | 0.0058 (6) | −0.0035 (6) |
C2 | 0.0295 (8) | 0.0325 (9) | 0.0290 (9) | 0.0015 (7) | 0.0105 (7) | −0.0008 (7) |
C3 | 0.0404 (10) | 0.0312 (9) | 0.0340 (10) | 0.0048 (7) | 0.0135 (8) | 0.0032 (7) |
C4 | 0.0390 (10) | 0.0375 (10) | 0.0333 (10) | 0.0129 (8) | 0.0045 (8) | 0.0019 (8) |
C5 | 0.0274 (8) | 0.0432 (10) | 0.0373 (10) | 0.0034 (8) | 0.0055 (7) | −0.0038 (8) |
C6 | 0.0298 (8) | 0.0339 (9) | 0.0347 (10) | 0.0000 (7) | 0.0108 (7) | 0.0011 (7) |
C8 | 0.0228 (8) | 0.0328 (8) | 0.0253 (8) | −0.0029 (6) | 0.0091 (6) | 0.0004 (7) |
C9 | 0.0264 (8) | 0.0346 (9) | 0.0261 (8) | −0.0028 (7) | 0.0076 (7) | −0.0037 (7) |
C10 | 0.0284 (8) | 0.0293 (8) | 0.0312 (9) | −0.0005 (7) | 0.0115 (7) | −0.0034 (7) |
C11 | 0.0356 (9) | 0.0409 (10) | 0.0306 (9) | −0.0019 (8) | 0.0142 (7) | 0.0034 (8) |
C12 | 0.0336 (9) | 0.0411 (10) | 0.0296 (9) | −0.0068 (7) | 0.0121 (7) | 0.0004 (8) |
C14 | 0.131 (2) | 0.0439 (13) | 0.0537 (15) | 0.0229 (15) | 0.0394 (15) | −0.0021 (11) |
C15 | 0.0881 (18) | 0.0460 (13) | 0.118 (2) | 0.0066 (12) | 0.0718 (18) | 0.0090 (14) |
O13—C12 | 1.334 (2) | C6—H6B | 0.9900 |
O13—C14 | 1.459 (2) | C8—C9 | 1.393 (2) |
O16—C12 | 1.202 (2) | C8—C10 | 1.397 (2) |
N1—C5 | 1.371 (2) | C9—C10i | 1.386 (2) |
N1—C2 | 1.376 (2) | C9—H9 | 0.9500 |
N1—C11 | 1.445 (2) | C10—C9i | 1.386 (2) |
N7—C8 | 1.405 (2) | C10—H10 | 0.9500 |
N7—C6 | 1.448 (2) | C11—C12 | 1.509 (2) |
N7—H7 | 0.87 (2) | C11—H11A | 0.9900 |
C2—C3 | 1.366 (2) | C11—H11B | 0.9900 |
C2—C6 | 1.494 (2) | C14—C15 | 1.480 (4) |
C3—C4 | 1.412 (2) | C14—H14A | 0.9900 |
C3—H3 | 0.9500 | C14—H14B | 0.9900 |
C4—C5 | 1.358 (3) | C15—H15A | 0.9800 |
C4—H4 | 0.9500 | C15—H15B | 0.9800 |
C5—H5 | 0.9500 | C15—H15C | 0.9800 |
C6—H6A | 0.9900 | ||
C12—O13—C14 | 117.26 (15) | C10i—C9—C8 | 121.52 (15) |
C5—N1—C2 | 108.99 (14) | C10i—C9—H9 | 119.2 |
C5—N1—C11 | 124.99 (14) | C8—C9—H9 | 119.2 |
C2—N1—C11 | 125.74 (13) | C9i—C10—C8 | 120.82 (15) |
C8—N7—C6 | 119.71 (14) | C9i—C10—H10 | 119.6 |
C8—N7—H7 | 111.2 (13) | C8—C10—H10 | 119.6 |
C6—N7—H7 | 112.4 (13) | N1—C11—C12 | 112.22 (14) |
C3—C2—N1 | 107.35 (14) | N1—C11—H11A | 109.2 |
C3—C2—C6 | 131.07 (16) | C12—C11—H11A | 109.2 |
N1—C2—C6 | 121.55 (14) | N1—C11—H11B | 109.2 |
C2—C3—C4 | 108.01 (16) | C12—C11—H11B | 109.2 |
C2—C3—H3 | 126.0 | H11A—C11—H11B | 107.9 |
C4—C3—H3 | 126.0 | O16—C12—O13 | 124.30 (17) |
C5—C4—C3 | 107.20 (15) | O16—C12—C11 | 124.97 (16) |
C5—C4—H4 | 126.4 | O13—C12—C11 | 110.68 (14) |
C3—C4—H4 | 126.4 | O13—C14—C15 | 109.1 (2) |
C4—C5—N1 | 108.44 (15) | O13—C14—H14A | 109.9 |
C4—C5—H5 | 125.8 | C15—C14—H14A | 109.9 |
N1—C5—H5 | 125.8 | O13—C14—H14B | 109.9 |
N7—C6—C2 | 111.19 (13) | C15—C14—H14B | 109.9 |
N7—C6—H6A | 109.4 | H14A—C14—H14B | 108.3 |
C2—C6—H6A | 109.4 | C14—C15—H15A | 109.5 |
N7—C6—H6B | 109.4 | C14—C15—H15B | 109.5 |
C2—C6—H6B | 109.4 | H15A—C15—H15B | 109.5 |
H6A—C6—H6B | 108.0 | C14—C15—H15C | 109.5 |
C9—C8—C10 | 117.65 (14) | H15A—C15—H15C | 109.5 |
C9—C8—N7 | 118.49 (14) | H15B—C15—H15C | 109.5 |
C10—C8—N7 | 123.76 (15) | ||
C5—N1—C2—C3 | 0.62 (19) | C6—N7—C8—C9 | −168.51 (14) |
C11—N1—C2—C3 | 174.76 (15) | C6—N7—C8—C10 | 15.1 (2) |
C5—N1—C2—C6 | 178.91 (15) | C10—C8—C9—C10i | 1.1 (3) |
C11—N1—C2—C6 | −6.9 (2) | N7—C8—C9—C10i | −175.50 (15) |
N1—C2—C3—C4 | −0.29 (19) | C9—C8—C10—C9i | −1.1 (3) |
C6—C2—C3—C4 | −178.36 (17) | N7—C8—C10—C9i | 175.31 (15) |
C2—C3—C4—C5 | −0.1 (2) | C5—N1—C11—C12 | 91.1 (2) |
C3—C4—C5—N1 | 0.5 (2) | C2—N1—C11—C12 | −82.1 (2) |
C2—N1—C5—C4 | −0.7 (2) | C14—O13—C12—O16 | 0.0 (3) |
C11—N1—C5—C4 | −174.91 (15) | C14—O13—C12—C11 | 177.48 (19) |
C8—N7—C6—C2 | −171.17 (14) | N1—C11—C12—O16 | −21.2 (2) |
C3—C2—C6—N7 | −121.41 (19) | N1—C11—C12—O13 | 161.25 (14) |
N1—C2—C6—N7 | 60.8 (2) | C12—O13—C14—C15 | 143.89 (19) |
Symmetry code: (i) −x+2, −y, −z+1. |
Cg1 is the centroid of the C8–C10/C8'–C10' ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H7···O16ii | 0.87 (2) | 2.20 (2) | 3.025 (2) | 159.5 (18) |
C5—H5···O16iii | 0.95 | 2.51 | 3.453 (2) | 172 |
C11—H11B···O13iv | 0.99 | 2.47 | 3.435 (2) | 164 |
C11—H11A···Cg1v | 0.99 | 2.88 | 3.794 (2) | 153 |
C11—H11A···Cg1iv | 0.99 | 2.88 | 3.794 (2) | 153 |
Symmetry codes: (ii) −x+1, −y, −z; (iii) −x, −y, −z; (iv) −x+1, −y, −z+1; (v) x−1, y, z. |
Cg1 is the centroid of the C8–C10/C8'–C10' ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H7···O16i | 0.87 (2) | 2.20 (2) | 3.025 (2) | 159.5 (18) |
C5—H5···O16ii | 0.95 | 2.51 | 3.453 (2) | 172 |
C11—H11B···O13iii | 0.99 | 2.47 | 3.435 (2) | 164 |
C11—H11A···Cg1iv | 0.99 | 2.88 | 3.794 (2) | 153 |
C11—H11A···Cg1iii | 0.99 | 2.88 | 3.794 (2) | 153 |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x, −y, −z; (iii) −x+1, −y, −z+1; (iv) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C24H30N4O4 |
Mr | 438.52 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 150 |
a, b, c (Å) | 8.1476 (2), 17.6289 (4), 8.8692 (3) |
β (°) | 114.835 (4) |
V (Å3) | 1156.10 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.4 × 0.3 × 0.3 |
Data collection | |
Diffractometer | Agilent SuperNova, Single source at offset, Atlas |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2013) |
Tmin, Tmax | 0.666, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19988, 2992, 1926 |
Rint | 0.058 |
(sin θ/λ)max (Å−1) | 0.693 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.135, 1.03 |
No. of reflections | 2992 |
No. of parameters | 150 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.23, −0.23 |
Computer programs: CrysAlis PRO (Agilent, 2013), SHELXS2014 (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2015), Mercury (Macrae et al., 2008), OLEX2 (Dolomanov et al., 2009), SHELXL2014 (Sheldrick, 2015).
Acknowledgements
The authors are grateful to the Iraqi Ministry for Higher Education for providing six months funding for JA's PhD scholarship. We also thank Dr Inigo Vitorica-yrezabal (School of Chemistry, University of Manchester) for his helpful advice.
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