forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Accepted 16 January 2025

Deconvoluting thermomechanical effects in X-ray diffraction data using machine learning


Accepted 13 January 2025

Unit-cell parameters determination from a set of independent electron diffraction zonal patterns

We present an algorithm for unit-cell determination from a set of randomly oriented electron diffraction patterns and demonstrate its performance for two known structures (copper perchlorophthalocyanine and lysozyme) and one as-yet uncharacterized structure.

Accepted 8 January 2025

A physical optics formulation of Bloch waves and its application to 4D STEM, 3D ED and inelastic scattering simulations

This article describes the re-formulation of Bloch waves using physical optics theory for more efficient simulation of large electron diffraction data sets.

Accepted 12 December 2024

Crystallography of quasiperiodic moiré patterns in homophase twisted bilayers

The quasiperiodic nature of moiré patterns in homophase twisted bilayers is analyzed to understand the underlying basic periodicities and symmetries of homophase twisted bilayers built on any 2D structure.
Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS

Accepted 2 January 2025

The chemical theory of valence


Accepted 30 December 2024

Crystallography of the litharge to massicot phase transformation from neutron powder diffraction data


Accepted 12 December 2024

Structural studies of hydrated rare earth nitrates within the stereoatomic model of crystal structures


Accepted 11 December 2024

High-pressure and low-tem­per­ature behaviour of organic ferroelectric (R)-3-quinuclidinol

Pressure-induced structural strain in (R)-3-quinuclidinol crystals is analysed over different pressure ranges[under pressure] and com­pared with structural strain on cooling.

Accepted 1 December 2024

Photoelasticity of crystals with the scheelite structure: quantum mechanical calculations

The methodology proposed combines the DFT calculations and photoelasticity caused by uniaxial compression of the crystal lattice, with particular emphasis on its anisotropy. It can be considered as part of optical engineering aimed at preliminary assessment of the photoelastic properties of crystal materials, thus assisting in their selection for synthesis and relevant applications.

Accepted 28 November 2024

Crystal structure and doping in synthetic enstatite: an analysis of Li/Fe3+-doped single-crystal samples

Several Li+/Fe3+-doped Pbca orthoenstatite and Pbcn protoenstatite crystals were characterized revealing that varying levels of doping preferentially affect the py­rox­ene topologies.

Accepted 15 November 2024

Electron density distribution in bis­(guanidinium) disodium hypodiphosphate heptahydrate, (CH6N3)2Na2(P2O6)·7H2O

Electron density distribution in bis(guanidinium) disodium hypodiphosphate heptahydrate, (CH6N3)2Na2(P2O6)·7H2O, is reported.

Accepted 13 November 2024

Modulation of the modulated magnetic structure of an Ho i-MAX phase described by a magnetic (3+2)-dimensional superspace group

A rare complex incommensurate magnetic structure, an amplitude-modulated structure which itself is modulated, was determined in the Ho-based i-MAX phase (Mo2/3Ho1/3)2GaC. It represents a particularly distinctive case of a 2-k magnetic structure with no symmetry relation between the propagation vectors.

Accepted 13 November 2024

Crystallization induced by fungi and bacteria

The patterns of microbial crystallization are controlled by the chemical composition of biofilms associated with environmental exposure and the activity of microorganisms. The nutrition of microorganisms changes the oxalic acid and extracellular polymer substance content in the products of microbial metabolism, which significantly affects the medium pH promoting either the oxalate or carbonate crystallization.

Accepted 12 November 2024

SARAh – web representational analysis

The online software server SARAh—webRepresentational Analysis is introduced. The new suite of web apps carries out a range of calculations based on representation theory for the modelling of possible magnetic structures, their refinement from neutron scattering data and the analysis of other problems in condensed matter.

more ...
Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 13 January 2025

Synthesis and diverse crystal packing in o-, m- and p-bis­(carbonyl­thio­ureido)benzenes containing bis­ferrocenes

Three bis­(acyl­thio­urea) positional isomers containing two ferrocenyl groups were synthesized and characterized by X-ray diffraction. Their various noncovalent inter­actions and crystal assemblies have been investigated.

Accepted 10 January 2025

Conformational versatility among crystalline solids of L-phenyl­alanine derivatives

We present the synthesis and characterization of four new crystalline forms of a N-derivative of L-phenyl­alanine with 2-naphthaldehyde, where the com­pound adopts different unfolded and folded conformations depending on its charge state and the supra­molecular environment. To characterize and classify such conformational differences, we propose the use of a dimensionless Shape Factor qu­antity defined as the Structural Aspect Ratio (SAR), which proves to be a simple but useful tool for this purpose, and its application could be extended to other conformational studies.

Accepted 8 January 2025

Crystal structure of submicron-sized sulfur particles using 3D ED obtained in atmospheric conditions

The structure solution and refinement from three-dimensional electron diffraction (3D ED) data of elemental sulfur, known to sublimate in the vacuum of transmission electron microscopes, is enabled through the use of an environmental cell with a micro-electromechanical system. This work represents the first step in characterizing sulfur's transformation into lithium polysulfides using in-situ 3D ED.

Accepted 20 December 2024

Fast event-based electron counting for small-mol­ecule structure determination by MicroED

Fast readout event-based electron counting (EBEC) is a promising detection strategy to determine accurate ab initio structures of beam-sensitive small mol­ecules by MicroED. A fast EBEC approach enhances the dynamic range of MicroED data by limiting the likelihood of coincidence loss (CL) – the undercounting of electrons due to their spatially and temporally unresolved arrival on a direct electron detector. As implemented by new counting detectors, fast EBEC allows structure-worthy data sets to be captured from individual small-mol­ecule crystals in under a minute.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY

Accepted 16 January 2025

Reconsideration of the P-clusters in VFe proteins using the bond-valence method: towards their electron transfer and protonation

The oxidation of PN to P1+/P2+ clusters corresponds to coordination by the hydroxyl group of serine and the amide group of cysteine without electron and proton transfers.
Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 17 January 2025

Synthesis and crystal structure of 2,2,2-tri­chloroethyl N-{4-[6-(1-hy­droxy­eth­yl)-1,2,4,5-tetra­zin-3-yl]benz­yl}carbamate

A 3,6-disubstituted 1,2,4,5-tetra­zine was synthesized and characterized by single-crystal X-ray diffraction, revealing a complex hydrogen-bonded network with inter­actions between tetra­zine N atoms and hydroxyl groups, thereby complementing the only scarcely explored features of tetra­zines in the solid state.

Accepted 10 January 2025

Synthesis and structure of 2-oxo-2H-chromen-4-yl 4-bromo­benzoate: work carried out as part of the CNRS AFRAMED project

In the title compound, the dihedral angle between the chromen-2-one ring system and the bromo­benzene ring is 10.29 (6)°. In the crystal, the mol­ecules are connected through C—H⋯O hydrogen bonds and π–π stacking inter­actions.
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 20 January 2025

Redox-dependent hydrogen-bond network rearrangement of ferredoxin-NADP+ reductase revealed by high-resolution X-ray and neutron crystallography

High-resolution X-ray and neutron crystallography reveal redox-dependent rearrangements in the hydrogen bond network of Ferredoxin-NADP+ reductase, highlighting structural changes around the FAD cofactor and shifts in water molecules that underpin its electron transfer mechanism. These findings provide valuable insights into the functional modulation of FNR.

Accepted 18 January 2025

Structure of Clostridium leptum carboxyspermidine de­carboxylase and comparison to homologs prevalent within the human gut microbiome

A high-resolution structure of carboxyspermidine decarboxylase, a member of the PLP-dependent, β/α-barrel-fold, decarboxylase family is analyzed.

Accepted 15 January 2025

Structural insights into the role of the prosegment binding loop in a papain-superfamily cysteine protease from Treponema denticola

TDE0362 is an essential factor for the pathogenicity of T. denticola in oral bacterial disease. This work provides insights into the regulatory mechanism of TDE0362 and identifies putative substrate-binding interfaces which could be used to guide further research towards inhibition of this enzyme.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 19 January 2025

Deep learning powered desmearing for small-angle scattering

We present a novel deep learning-based desmearing network (DSNet) that requires minimal simulation data for pre-training before fine-tuning. DSNet demonstrates excellent noise robustness and remarkable generalization performance, validated through both simulations and experiments.

Accepted 14 January 2025

Hydro­static behaviour of highly inert fomblin and halocarbon fluids as pressure-transmitting media in high-pressure experiments

Hydro­static properties of highly inert perhalogenated fluids were investigated using ruby fluorescence measurements.

Accepted 14 January 2025

An extended thermal pressure equation of state for sodium fluoride

A PVT equation of state has been determined for sodium fluoride with a range of validity between 12 and 950 K in temperature and 0 and 25 GPa in pressure based on a fourth-order Birch–Murnaghan expression for isothermal compression and a Mie–Grüneisen–Debye model for thermal pressure.

Accepted 6 January 2025

First-principles calculations of quartz–coesite interfaces


Accepted 2 January 2025

Theoretical investigation of adsorptive nitrate ion removal by pure graphene, Mo-decorated graphene and reduced graphene oxide based adsorbents: a DFT study


Accepted 29 December 2024

New robotic tools for multimodal non-destructive analysis and characterization of 2D and 3D objects

The forensic field requires versatile equipment for non-destructive characterization, analysis and inspection of 2D and 3D objects. The robotic scanner introduced here allows transmission X-ray imaging and mapping of individual photons with high-sensitivity and -resolution detectors. The broad capabilities of X-ray diffraction (XRD) imaging are now being complemented by X-ray fluorescence point analysis and mapping, multispectral macro imaging, and multispectral XRD analysis.

Accepted 27 December 2024

Method of precise optical crystal alignment by tilting the diamond anvil cell

A novel method for precise crystal alignment in a diamond anvil cell has been developed. This method leverages Snell's law providing immediate visual feedback for alignment and offering exceptional accuracy (<0.02 mm) while being simple and fast, facilitating high-pressure diffraction experiments.

Accepted 23 December 2024

An advanced approach combining solid-state NMR with powder diffraction applied to newly synthesized iso­thio­uronium salts

The synthesis of new tetra­fluoro­borate and bromide salts of iso­thio­uronium compounds is presented, followed by structural and spectroscopic studies, demonstrating that using solid-state NMR-derived intermolecular distances as a restriction can increase the likelihood of finding the crystal structure model when solving a crystal structure from powder diffraction data.

Accepted 22 December 2024

Reciprocal-space mapping calculations of X-ray Laue diffraction in a crystal with thermomigration channels

In Laue geometry, based on two-dimensional recurrence relations of X-ray diffraction in a crystal with a complex elastic strain distribution, the method for calculating reciprocal-space maps has been developed.

Accepted 17 December 2024

Integral X-ray diffuse scattering for studying irradiation-induced dislocation loops in single crystals

A computational and experimental investigation of integral X-ray diffuse scattering near Bragg reflections with a wide-open detector is presented for the case of small circular irradiation-induced dislocation loops in metals. The large wavevector asymptotic power-law falloff for such loops is determined computationally and incorporated into numerical and analytical integral X-ray diffuse scattering cross-section calculations. These calculations are shown to enable the experimental determination of the size distribution and concentrations of irradiation-induced dislocation loops in single-crystalline tungsten.

more ...
Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 16 January 2025

Massive compression for high data rate macromolecular crystallography (HDRMX): impact on diffraction data and subsequent structural analysis


Accepted 14 January 2025

Deep learning-based spatio-temporal fusion for high-fidelity ultra-high-speed x-ray radiography

We develop and evaluate a deep learning-based algorithm that demonstrates the potential to reconstruct simultaneously high resolution, high frame-rate x-ray image sequences with high fidelity through spatio-temporal fusion. Our experimental evaluation shows that our method can significantly improve the accuracy of the reconstruction, achieving an average peak signal-to-noise ratio (PSNR) of more than 35 dB on two representative x-ray image sequences with input data streams of 4 times lower spatial resolution and 20 times lower frame rate, respectively.

Accepted 8 January 2025

The current status and future prospects of the Synchrotron Radiation Protein Crystallography Core Facility at NSRRC: a focus on the TPS 05A, TPS 07A and TLS 15A1 beamlines

The SPXF has revolutionized structural biology research through its advanced light sources, enabling crucial breakthroughs in disease research. The facility's integration of automation and cutting-edge techniques provides world-class resources for global researchers.

Accepted 8 January 2025

Design and implementation of a user office system for the Canadian Light Source

An open-source software system for managing user office operations at a large-scale research facility is presented.

Accepted 19 December 2024

Image registration for accurate electrode deformation analysis in operando microscopy of battery materials

We applied advanced image-processing techniques, including fast Fourier Transform analysis, image registration and optical flow, to mitigate artifacts caused by system instabilities and accurately track battery electrode deformations during operation. This approach improves the reliability of high-resolution operando imaging, providing deeper insights into battery degradation and enhancing our understanding of chemomechanical interactions in battery performance.

Accepted 19 December 2024

Macromolecular crystallography from an industrial perspective – the impact of synchrotron radiation on structure-based drug discovery

Structure-based drug design has been a critical component of drug discovery for over 30 years, contributing to numerous approved drugs. The paper discusses the approach taken by AstraZeneca (Sweden) to synchrotron data collection for supporting a large portfolio of drug discovery projects and provides examples to demonstrate the continued importance of experimental structures.

Accepted 18 December 2024

Mixed gain detector configurations for time-resolved X-ray solution scattering


Accepted 16 December 2024

Probing soft X-ray induced photoreduction of a model Mn-complex at cryogenic conditions

This controlled radiation damage study at different temperatures allows the approaches to measuring radiation-damage-free/limited spectra from redox-sensitive metalloenzymes and metal complexes in the soft X-ray regime at synchrotrons to be refined.

Accepted 14 December 2024

New online beam intensity synchronous monitoring system in scanning transmission X-ray microscopy

A new online beam intensity synchronous monitoring system has been designed which can precisely and synchronously monitor X-ray beam intensity variations. This can be used to remove noise due to electron injection from STXM images, thereby markedly improving the quality of STXM imaging.

Accepted 13 December 2024

Compensation for the source drift of a free-electron laser beamline by adjusting the fixed-focus constant of the grating monochromator

A method for compensating for the source drift of a free-electron laser beamline by adjusting the Cff value of a grating monochromator is introduced.

more ...IUCrJ
Accepted 15 January 2025

The nature of halogen bonding: insights from interacting quantum atoms and source function studies

Interacting quantum atoms and source function studies on a series of halogen-bonded complexes between substituted pyridines and X2 or XCN molecules (X = I, Br) focus on the combined role played by the X and N interacting pairs and their local environment.

Accepted 3 January 2025

Understanding the selectivity of nonsteroidal anti-inflammatory drugs for cyclooxygenases using quantum crystallography and electrostatic interaction energy

This study employs quantum crystallography to elucidate the selectivity of NSAIDs, including ibuprofen, flurbiprofen, meloxicam and celecoxib, for cyclo­oxygenase-1 and cyclooxygenase-2 enzymes by analyzing binding energy and electrostatic interactions. The findings reveal key structural determinants of NSAID selectivity, providing valuable insights for the rational design of safer and more effective anti-inflammatory drugs.

Accepted 28 December 2024

Single-shot X-ray imaging of two-dimensional strain fields in colloidal crystals

We used the Bragg coherence diffraction imaging method at the Coherent Scattering and Imaging endstation of the Shanghai Soft X-ray Free Electron Laser Facility to characterize colloidal crystals. This method successfully reproduced the static shape of crystals and we observed the defect structure of colloidal samples.

Accepted 13 December 2024

Accounting for electron beam-induced warping of molecular nanocrystals in MicroED structure determination

Here we identify and characterize the warping of molecular crystal lattices induced by electron beam exposure during microcrystal electron diffraction (MicroED/3DED) data collection. We find changes to consensus crystal lattice orientation that are often dramatic, and appear ubiquitous in small organic molecule crystals. This evidence highlights the relevance of crystal bending or warping as a consequence of radiation-induced damage on molecular specimens, and points to it as a fundamental source of error in MicroED/3DED data collection and structure determination.

Accepted 12 December 2024

Experimental electronic structure of copper complexes with bi­phenyldi­imino di­thio­ether – model of blue copper proteins

Differences in the electronic structures of Cu(I) and Cu(II) coordination compounds with the same ligand as model structures for blue copper proteins were studied.
Journal logoIUCrData
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