forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Crystal structure of a new selenite-sulfate compound Ag4Cu(SeO3)2(SO4)
A new selenite-sulfate compound Ag4Cu(SeO3)2(SO4), was successfully obtained through a conventional hydrothermal method. The compound exhibits layered structures formed by the arrangement of 1D chains in the bc plane.
The crystal structure of eveslogite revealed by electron diffraction techniques: a titanosilicate mineral with structurally and compositionally distinct nanoscopic tubular units
The study of the mineral eveslogite reveals a unique structure based upon two types of nanoscopic heterosilicate-based tubules.
Seed layer formation by deposition of micro-crystallites on a revolving substrate. Part II: application to some nonlinear effects
A method of averaging the material coefficients of crystallites deposited at an angle [on]to a rotating substrate isapplied to effective nonlinear dielectric, piezoelectric and elastic constants, as well as linear pyroelectric coefficients, for triclinic crystals.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Synthesis and crystal structure characterization of Na[Fe4S3(NO)7]·5H2O
The title compound is a hydrated sodium salt of a nitrosyl iron–sulfur cluster. While retaining the typical [Fe4S3(NO)7]− core framework, a unique one-dimensional hydrogen-bonded supramolecular network is formed induced by Na+; the refinement process properly handled the 60° rotational disorder phenomenon of the anion in this structure.
Solvent-free thallium(I) tetrakis[3,5-bis(trifluoromethyl)phenyl]borate: crystal structure, supramolecular interactions and anisotropic thermal expansion
The solvent-free structure of the thallium(I) salt of the weakly coordinating anion tetrakis[3,5-bis(trifluoromethyl)phenyl]borate, Tl[BC32H12F24], exhibits short Tl⋯F contacts and a supramolecular architecture governed by C—H⋯F hydrogen bonds and weak F⋯F and C—F⋯π interactions. Disorder and tilting of the arene rings generate different close-contact motifs, giving rise to hinge-like intermolecular interactions and pronounced anisotropic thermal expansion along the crystallographic a and b axes.
Are crystal structures getting better? A temporal and elemental analysis of the Cambridge Structural Database
A statistical evaluation of the entries in the Cambridge Structural Database reveals trends in structural quality as described by the accessible quality indicators in the CSD with respect to the structures' publication year and the elements contained.
Eu5Ga2As6 and Ba5In2As6–xSbx: new As-containing members of the Sr5Al2Sb6 structure type
The first As-containing representatives of the Sr5Al2Sb6 structure type are reported. The anionic substructures in Eu5Ga2As6 and Ba5In2As6–xSbx [x = 0.49 (2) and 2.92 (2)] comprise 1D chains of corner- and edge-sharing [TrPn4] tetrahedra with pendant [Pn2] dumbbells (Tr = Ga, In; Pn = As, Sb). The mixed-pnictogen phases reveal site-selective As/Sb substitution as a potential route for tuning the bonding and physical properties of this family.
Uranyl derivatives: discovering features by comparing related crystal structures
A brief overview of the existing data on related UO22+-containing crystal structures uncovered some peculiarities about three new derivatives. The first crystal structure with simultaneously present H3O+ and Be2+ cations was solved. The rigidity of topology to the change of the nature of the fragments and ways to control the atom environment via the ratio of the reagents are discussed.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
A short history of Auto-Rickshaw
Auto-Rickshaw is an example of practical, decision-driven automated macromolecular structure determination from crystallographic diffraction data. This review traces its development at the EMBL–Hamburg/DESY beamline environment, where rapid validation of diffraction experiments was essential, through its expansion into a general platform for automated structure solution and its continuing relevance to beamline automation.
Radiation damage in serial femtosecond crystallography studied in hemoglobin
Protein structures determined by serial femtosecond crystallography are indistinguishable when measured with 3 and 10 fs X-ray pulses, indicating no structural benefit from further shortening the pulse duration under the studied conditions.
KAT6A–inhibitor co-crystal structures: tackling a challenging crystallization target via two alternative approaches
We report a novel cysteine-to-serine surface-mutation approach to determine co-crystal structures of KAT6A with small-molecule inhibitors and compare it with the previously published MYSTcryst approach which uses mutated KAT8 as a surrogate for KAT6A. A series of co-crystal structures obtained from both approaches, with three different inhibitor chemotypes, reveal alternative inhibitor conformations at the binding-site entry and the importance of filling a hydrophobic subpocket. These insights expand the experimental basis for future KAT6A inhibitor design for cancer therapy.
Single-crystal X-ray and in crystallo XANES studies resolve cobalt coordination in cobalamin and rule out radiation-induced ligand loss in human intrinsic factor
Ultrahigh-resolution crystallography combined with in crystallo Co K-edge XANES shows that cobalamin retains octahedral cobalt coordination in both oxidized and reduced states. These results rule out radiation-induced Co–CN cleavage as the cause of the missing axial ligand in intrinsic factor-bound cobalamin.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Synthesis, crystal structure determination, Hirshfeld surface and crystal void analyses, interaction energy calculations and energy frameworks of N-(2-methylphenyl)-N′-pivaloylthiourea
The asymmetric unit of the title compound comprises an ordered molecule, consisting of methylphenyl and pivaloyl moieties attached to the N atoms of the central thiourea entity.
Crystal structure of a hydrate of 1,3,5-substituted 2,4,6-trialkylbenzene bearing hydroxymethyl and pyridinylamino groups
In the asymmetric unit, two molecules of the 1,3,5-substituted 2,4,6-trialkylbenzene and three water molecules are connected by hydrogen bonds, forming well-defined complexes that constitute the smallest supramolecular entities.
Synthesis, crystal structure and Hirshfeld surface analysis of 3-[5-(4-chlorophenyl)-2-sulfanylidene-1,3,4-oxadiazol-3-yl]-3-(4-methylphenyl)-1-(thiophen-2-yl)propan-1-one
The asymmetric unit of the title molecule contains a planar oxadiazole, a thiophene and two phenyl rings. In the crystal, π–π stacking interactions and C—H⋯π(ring) interactions help to consolidate the packing.
Synthesis, crystal structure and Hirshfeld surface analysis of 2-(ethylsulfanyl)-3-(2-methylpropyl)-5,5-diphenyl-4,5-dihydro-3H-imidazol-4-one
In the title molecule, the imidazolone ring is essentially planar and the inclinations of the planes of the two attached phenyl groups to its plane are distinctly different. There is a degree of π-delocalization in the ring about the tertiary nitrogen which involves its lone pair. Directed intermolecular interactions comprise C—H⋯O hydrogen bonds and two sets of C—H⋯π(ring) interactions. A Hirshfeld surface analysis was performed.
Synthesis and structure of benzyl 4-{[4-(hexyloxy)benzoyl]oxy}benzoate
In the title compound, the aromatic ring of the 4-hexyloxybenzoyl moiety and the central benzoate ring are twisted relative to one another, subtending a dihedral angle of 39.7 (2)°. The hexyloxy chain adopts an extended, approximately all-anti conformation and two short intramolecular C—H⋯O contacts are observed. In the extended structure, C—H⋯π interactions help to consolidate the packing.
Synthesis and structure of dichlorido{(E)-4-methyl-N′-[1-(pyridin-2-yl)ethylidene]benzohydrazide}zinc(II)
The ligand in the title complex, was obtained by a condensation reaction between p-tolyl hydrazide and 2-acetylpyridine. The ligand molecule bonds to the metal ion in a tridentate manner via its imino nitrogen atom, its carbonyl oxygen atom, and the nitrogen atom of the pyridine ring. In the extended structure, pairwise N—H⋯Cl hydrogen bonds generate inversion dimers and very weak C—H⋯Cl interactions link the dimers into sheets.
Bis(tetraethylammonium) dodecacyanododecaborate(2−)
Bis(tetraethylammonium) dodecacyanododecaborate(2−) crystallizes in the trigonal space group P3. The B12(CN)122– subunit has nearly icosahedral symmetry and interacts with the Et4N+ cation in the structure by multiple weak Csp3–H⋯N hydrogen bonds between CN groups on the anion and methyl or methylene H atoms on the cation.
Trigonal crystal structure of a phosphate belonging to the ABW-type zeolite family: RbCoFe(PO4)2
In the title phosphate, all of the cations are located on tetrahedral sites, and the three different tetrahedra are linked by their vertices to form a double layer stacked along the c-axis direction. The plane formed by the rubidium atoms is sandwiched between the double layers.
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| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Crystal structures of the sweet-tasting protein honey truffle active component from Mattirolomyces terfezioides
The crystal structures of the sweet-tasting protein honey truffle active component are reported to resolutions ranging from 1.23 to 1.70 Å. The structures correlate well with a previously reported NMR solution-phase protein structure and reveal side-chain configurations that are critical in binding of the protein to the human sweet taste receptor that are also involved in ligand interactions in solution and self-association.
Structural insights into a putative BLF1-like deamidase from Methylomonas sp. Kb3
The crystal structure of a putative BLF1-like deamidase from Methylomonas sp. Kb3 reveals conservation of the catalytic cysteine–histidine dyad despite extensive sequence variation. These findings expand the diversity of BLF1-like deamidases and provide a structural framework for understanding their evolution and potential functions.
| Journal of Applied Crystallography Journal of Applied Crystallography |
PolymCrystRefine: A Workflow for Diffraction Analysis of Polymer Crystals
An automated workflow, PolymCrystRefine, has been developed for polymer crystal structure refinement from fiber diffraction data, combining joint force field and intensity-gradient optimization, an ROI-based data exploitation scheme, and a genetic algorithm guided by fiber-specific constraints.
A low-cost, portable, polarizing digital light microscope for monitoring crystal growth and for crystal harvesting
A low-cost, portable, medium-resolution polarizing digital light microscope device for monitoring crystal growth and for crystal harvesting is described. The device can be used with a cell phone or a personal computer for real-time imaging by professional and amateur scientists alike.
Determination of water permeability in stress-free lipid membranes through time-resolved SANS
Time-resolved small-angle neutron scattering with rapid contrast variation enables direct non-invasive measurement of water permeation kinetics and membrane structure under iso-osmotic conditions for lipid membranes.
The effect of Nb and O on the martensitic transformation in Ti–Nb–O alloys
Using a newly developed 2D X-ray diffraction orientation simulation approach to isolate overlapping martensitic reflections, this study demonstrates that niobium controls continuous lattice symmetry evolution, whereas interstitial oxygen induces localized strain fields that nonlinearly govern the structural competition between α″ martensite and the athermal ω phase.
PolarEyes with enhanced digital imaging, a high-throughput solution for locating and grading crystals
An open-source program for the calculation and visualization of polarization-derived properties of crystalline material is described, alongside the integration of a polarizing image sensor into a home-built high-throughput imaging setup.
Development of a neutron texture analysis reduction pipeline in Mantid
An experimental planning and data processing pipeline for spatially resolved neutron texture analysis has been implemented within the Mantid framework. The workflow processes time-of-flight neutron diffraction data to generate experimental pole figures, enabling non-destructive quantitative texture analysis of materials and components with complex texture distributions.
Enhancing microstructural fidelity in near-field high-energy diffraction microscopy reconstruction with Noise2Void denoising
A self-supervised deep learning model, Noise2Void (N2V), denoises near-field high-energy diffraction microscopy diffraction images without requiring unobtainable clean data. These images allow for lower segmentation thresholds and detection of smaller and weaker diffraction peaks, often discarded or overlooked with conventional image processing methods. The result is a ∼9% increase in reconstruction confidence and a more accurate representation of fine microstructural features.
A unified resolution and multiple-scattering correction framework for Spallation Neutron Source ultra-small-angle neutron scattering and complementary small-angle neutron scattering
A practical and resolution-consistent data-reduction framework is established for ultra-small-angle neutron scattering, guiding users in correcting slit-geometry smearing and multiple scattering to obtain reliable intrinsic scattering profiles across combined ultra-small-angle and small-angle neutron scattering measurements.
AES-Debye: an accurate, efficient and scalable engine for Debye scattering calculations
AES-Debye is an accurate, efficient and scalable engine for evaluating the Debye scattering equation that enables total scattering calculations for large atomistic models. Corrected pair-distance binning and numerically robust accumulation suppress discretization artifacts, while parallel CPU/GPU execution enables efficient computation of scattering intensities and pair distribution functions for structural analysis.
Application of electrostatic and multi-layer embedding in Hirshfeld atom refinements: a cost-effective approach for approximating bulk effects in crystalline environments
A new efficient embedding mechanism for molecule-in-a-crystal electron-density calculations during Hirshfeld atom refinement is made available in NoSpherA2 and benchmarked.
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| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
A femtosecond time-resolved Bragg coherent diffraction imaging experimental setup at PAL-XFEL for nanoscale lattice dynamics studies
The XSS beamline at PAL-XFEL provides a femtosecond time-resolved Bragg coherent X-ray diffraction imaging setup, optimized for tracking transient lattice dynamics and nanoscale strain fields within single crystals during dynamic processes.
An efficient wave-optics framework for partially coherent pink X-ray beam simulation and analysis
This article proposes a new calculation method and framework for simulating a pink X-ray beam, significantly improving computational efficiency. By comparing it with the experimental data from the beamline, the simulation method is consistent with the actual situation.
Single-shot third-harmonic spectral diagnostics for tender X-ray FEL pulses using a bent-crystal spectrometer
Third-harmonic spectral monitoring with an existing bent-crystal spectrometer provides single-shot bandwidth diagnostics and real-time machine tuning for tender X-ray free-electron laser operation, and can be made non-invasive when combined with a suitable beam-sampling grating.

Structure and spectroscopy of propane and propene in the solid state from neutron powder diffraction and inelastic neutron scattering
We have carried out a variable-temperature high-resolution neutron powder diffraction study of perdeuterated propane and propene, as well as an inelastic neutron spectroscopy study of both the protiated and deuterated isotopologues of each substance. Coupled with first-principles computer simulations, these provide new insights into the structure and properties of these cosmically abundant molecular solids.
Interpreting wide-angle X-ray scattering data using DNA duplexes as model systems
Wide-angle X-ray scattering (WAXS) profiles of DNA duplexes reveal peaks and troughs that reflect real-space periodic structural features. We draw on information-theory-limited Fourier transforms, atomistic modeling and residue-index correlation maps to link the observed WAXS peaks to known structural features of DNA duplexes, introducing a new way to characterize nucleic acid structures.
A discussion of cryo-EM terminology as the outreach and number of PDB entries expand
Single-particle cryo-EM will soon equal the number of yearly entries in the Protein Data Bank from structures determined by X-ray crystallography. Considering the growing outreach of cryo-EM, it is timely to remind users of and define typical terms important for understanding the underlying fundamental physical concepts and key basics of single-particle cryo-EM and image processing, which are particularly relevant for the expanding cryo-EM community, including for newcomers and scientists joining from related fields.
Simple and robust aqueous sheet jets in vacuum
A novel vacuum-compatible liquid sheet jet nozzle, utilizing a second gas sheath, successfully generates stable aqueous films under 100 nm in thickness, overcoming previous freezing limitations in vacuum environments. This development simplifies operations and is demonstrated to be viable for high-repetition-rate X-ray scattering measurements at X-ray free-electron laser sources, broadening the applications for studying matter in solution.
Magnetic order in Tsai-type icosahedral quasicrystals and periodic approximants
This review summarizes recent experimental and theoretical advances in the magnetism of quasicrystals and their approximant crystals, and formulates three complementary and hierarchical design principles – valence electron concentration, crystal electric field-induced anisotropy and structural control of magnetic frustration – as primary tools for systematically tuning the magnetic ground states in these compounds.
Post-acquisition super resolution for cryo-electron microscopy
Post-acquisition super resolution (PASR) is a pre-processing step which can be utilized to exceed the resolution limit of already-acquired data if the limit is reached. It is designed to be as minimally invasive to all general single particle workflows as possible, allowing users to choose which suite they prefer.
| IUCrData IUCrData |
rac,endo-9-Hydroxy-9-methyltricyclo[5.2.2.02,6]undeca-4,10-dien-8-one
The tricyclic molecule of the title compound is composed of four nearly planar subunits. Hydrogen bonds connect the ketol units to chains along the a-axis direction. The structure is further consolidated by two C—H⋯O hydrogen bonds, one to the carbonyl and one to the hydroxy group.
4-Bromopyridinium trichloridostannate(II)
The crystal structure of the title compound comprises [SnIICl3]− and [4-BrPyH]+ ions. The structural parameters of the anion and the cation are presented and compared with those in other compounds. Intermolecular interactions such as tetrel bonds, π–π interactions and N—H⋯Cl hydrogen bonds are analysed.
(E)-4-{[(4-Methoxynaphthalen-1-yl)methylidene]amino}phenol
The title compound was obtained from the reaction of 4-hydroxy-aniline and 4-methoxy-1-naphthaldehyde in ethanol. The dihedral angle between the phenol ring and the mean plane of the naphthalene ring system is 75.81 (6)°.
Developed community standards on setting the diffraction resolution yields improved density maps and a new monosaccharide model in pdb_00004dda
A query over the electron density fit of a monosaccharide in pdb_00004dda was resolved through applying the data metrics of the raw diffraction data processing that have evolved though the decade since the original publication. This improved the electron-density quality to allow a definitive model fit.

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