forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
research papers
A computationally efficient quasi-harmonic study of ice polymorphs using the FFLUX force field
The next-generation machine-learning force field FFLUX is applied to ice polymorphs Ih, II and XV. Under the quasi-harmonic approximation, Gibbs free energies are calculated using FFLUX at a significantly reduced computational cost compared with the commonly used density functional theory methods. However, the parametrized non-bonded potentials impede the accuracy of the model, leading to large errors in the free energies calculated.
research papers
Growth functions of periodic space tessellations
For any periodic tilings of the plane by congruent polygons, growth functions are derived that count the numbers of vertices, edges and faces as the coverage expands. The functions are computed as polynomial formulas in a Python program and analyzed graphically using orphic diagrams.
Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
research papers
research papers
Selective acceleration and inhibition of crystal growth of glass carbamazepine by low-concentration poly(ethylene oxide):effects of drug polymorph
Low-concentration poly(ethylene oxide) exhibit the polymorph-dependent effects on both the surface and bulk crystal growth of carbamazepine polymorphs. These polymorph-dependent effects of PEO were mainly attributed to the polymer enrichment at the interface and different crystal surface-polymer interactions.
research papers
Density functional theory investigation of the phase transition, elastic and thermal characteristics for AuMTe2(M = Ga, In) chalcopyrite compounds
The first theoretical predictions of the phase transitions, elastic properties and thermal behavior of AuMTe2 (M = Ga, In) chalcopyrite compounds are presented. Using density functional theory and the quasi-harmonic Debye model, key mechanical and thermodynamic properties are analyzed, offering insights valuable for future experimental validation.
research papers
research papers
research papers
Co-crystal structure prediction of N-halide phthalimides with 3,5-dimethylpyridine
It is shown that the evolutionary algorithm USPEX can successfully predict stable stoichiometries of co-crystals and how synthon analysis helps to aid crystal structure prediction by identifying the likeliest structures.
research papers
Conformational disorder in quercetin dihydrate revealed from ultrahigh-resolution synchrotron diffraction
The charge-density distribution at ultrahigh resolution of quercetin dihydrate crystal reveals a subtle disorder in the catechol ring system. The electrostatic complementarity between the quercetin molecule and its surroundings is good with the water molecules, but less so in the aromatic stacking region.
research papers
Coordination geometry flexibility driving supramolecular isomerism of Cu/Mo pillared-layer hybrid networks
The hydrothermal synthesis and structural characterization of four novel 3D pillared-layer metal–organic frameworks are studied, revealing how the malleability of copper coordination geometries drives diverse supramolecular isomerism. The findings provide new insights into designing advanced hybrid materials with tailored properties, emphasizing the significant role of reaction conditions and metal ion flexibility in determining network topologies.
research papers
research papers
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Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
research papers
How to use DIALS to process chemical crystallography 3D ED rotation data from pixel array detectors
Three examples of data processing of chemical crystallography 3D ED rotation data using the DIALS package are presented. These examples are taken from a standard transmission electron microscope, and from two commercial instruments, each equipped with a low-noise pixel array detector optimized for diffraction studies.
research papers
Construction of pyridine-functionalized metal–organic frameworks for the detection of flazasulfuron
The photophysical properties of two novel Cu-based metal–organic frameworks (MOFs) were investigated by fluorescence spectroscopy. One of the MOFs shows an obvious `turn-on' fluorescence enhancement effect towards flazasulfuron and the potential application for sensing flazasulfuron in water with high selectivity and sensitivity was also investigated in detail.
Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
research communications (GO)
Crystal structure and Hirshfeld surface analysis of (2,7-diethoxynaphthalene-1,8-diyl)bis[(4-bromophenyl)methanone]
In the title compound, the two 4-bromobenzoyl groups are attached in a non-coplanar fashion to the naphthalene ring system and are oriented in opposite directions.
research communications (GO)
Syntheses and crystal structures of the imides 4-(2-phenylethyl)- and 4-[2-(4-hydroxyphenyl)ethyl]-4-azatetracyclo[5.3.2.02,6.08,10]dodec-11-ene-3,5-dione
The crystal structures of the title compounds feature C—H⋯π interactions as well as O—H⋯O and C—H⋯O hydrogen bonds.
research communications (GO)
Intra- and intermolecular C—H⋯F hydrogen bonds in the crystal structure of 1,2-bis[2-(2,3,4,5-tetrafluorophenyl)ethynyl]benzene
The structure of the aryl ethynylene molecule, 1,2-bis-(2,3,4,5-tetrafluorophenylethynyl) benzene includes two unique molecules in the unit cell. Both feature intramolecular sp2-C—H⋯F hydrogen bonds in addition to intermolecular C—H⋯F hydrogen bonds.
research communications (GO)
Crystal structure of the 1:1 cocrystal 5,5′-(triaz-1-ene-1,3-diyl)bis(3-nitro-1H-1,2,4-triazole)–triethylammonium nitrate
The triethylammonium nitrate cocrystal of 5,5′-(triaz-1-ene-1,3-diyl)bis(3-nitro-1H-1,2,4-triazole), obtained unintentionally from 3-amino-5-nitro-1,2,4-triazole (ANTA), exhibits extensive hydrogen bonding and modulation by pseudo-translation with Z* = 4.
research communications (GO)
Crystal structure, Hirshfeld surface, DFT and molecular docking studies of 2-{4-[(E)-(4-acetylphenyl)diazenyl]phenyl}-1-(5-bromothiophen-2-yl)ethanon,; a compound with bromine⋯oxygen-type contacts
The crystal structure of the title non-liquid crystal compound is consolidated by C—Br⋯O=C type contacts running continuously along the [001] direction.
Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
methods communications
Revisiting sodium phosphotungstate and ammonium molybdate as nonradioactive negative-staining agents for single-particle analysis
The most often used negative stains for single-particle analysis are based on the radioactive element uranium. Here, two stains based on tungsten or molybdenum are re-established as nonradioactive substitutes to allow a broader user base to use negative-staining electron microscopy in structural biology projects.
research communications (RC)
Crystal structure of a short-chain dehydrogenase from Burkholderia cenocepacia J2315 in complex with NADP+ and benzoic acid
The structure of the Burkholderia cenocepacia short-chain dehydrogenase/reductase (SDR) in complex with NADP+ and benzoic acid is presented. Analysis of the structure reveals a distinctive active-site architecture, suggesting that this protein is part of the divergent SDR subgroup.
research communications (RC)
Crystal structure of glutamyl-tRNA synthetase from Helicobacter pylori
Persistent H. pylori infection causes gastric ulcers and cancer, and multidrug resistance is increasing globally. The 2.5 Å resolution structure of H. pylori glutamyl-tRNA synthetase was determined as a first step towards rational drug discovery.
research communications (RC)
Journal of Applied Crystallography Journal of Applied Crystallography |
research papers
Residual stress depth profiling based on a triaxial stress model: the principal stress gradients in magnetron sputtered molybdenum films
Depth-dependent investigation of the principal stress gradients in a sputtered coating applying asymmetric diffraction and different data evaluation routines.
research papers
Intensity corrections for grazing-incidence X-ray diffraction of thin films using static area detectors
Intensity correction factors for grazing incidence X-ray diffraction are derived theoretically and applied to experimental data of thin film samples with different textures. The provided corrections promise improved quality of crystal structure solutions from thin films and allow quantitative texture and phase analysis.
research papers
Effect of thickness and noise on angular correlation analysis from scanning electron nanobeam diffraction of disordered carbon
The impact of sample thickness and experimental noise on angular correlation analysis from scanning electron nanobeam diffraction patterns of disordered carbon are investigated and analyzed regarding the interpretability of the analysis results.
research papers
High-accuracy high-resolution measurements of fluorescence in manganese using extended-range high-energy-resolution fluorescence detection
By applying the new technique of extended-range high-energy-resolution fluorescence detection (XR-HERFD), developed from high-resolution resonant inelastic X-ray scattering and HERFD, the analysis of data from all three techniques is explained to discover new physical processes in matter, with solid manganese as an example.
research papers
computer programs
research papers
Multimodal reconstruction of TbCo thin-film structure with Bayesian analysis of polarized neutron reflectivity
For the first time, a multimodal reconstruction of a magnetic thin-film structure has been found using polarised neutron reflectivity. This has been achieved by implementing the Bayesian approach in combination with error correction based on the maximum likelihood method and instrument function optimization.
computer programs
TOMOMAN: a software package for large-scale cryo-electron tomography data preprocessing, community data sharing and collaborative computing
Here we describe TOMOMAN (TOMOgram MANager), an extensible open-sourced software package for handling cryo-electron tomography data preprocessing. TOMOMAN streamlines interoperability between a wide range of external packages and provides tools for project sharing and archival.
research papers
Advanced EXAFS analysis techniques applied to the L-edges of the lanthanide oxides
The L-edge extended X-ray absorption fine structure (EXAFS) spectra of the entire set of lanthanide oxides were collected and modeled, taking into consideration the aggregation of inequivalent absorbing sites, geometric parameterization of the crystal lattice and multielectron excitation removal.
research papers
Optimal operation guidelines for direct recovery of high-purity precursor from spent lithium-ion batteries: hybrid operation model of population balance equation and data-driven classifier
This study proposes an operation optimization framework for impurity-free recycling of spent lithium-ion batteries. Using a hybrid population balance equation integrated with a data-driven condition classifier, the study firstly identifies the optimal batch and semi-batch operation conditions that significantly reduce the operation time with 100% purity of product; detailed guidelines are given for industrial applications.
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Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
research papers
Enhancing the efficiency of a wavelength-dispersive spectrometer based upon a slitless design using a single-bounce monocapillary
A slit-less wavelength-dispersive spectrometer design using a single-bounce monocapillary that aligns the sample on the Rowland circle, enhancing photon throughput and maintaining resolution. The compact design supports flexibility and reconfiguration in facilities without complex beamline infrastructure, significantly improving detection efficiency.
research papers
Comparative study of crystallization kinetics and phase segregation of triple cation and methylammonium lead iodide perovskites on moisture probing using synchrotron X-ray based radiation
Synchrotron techniques have been used in the analysis of crystal structure and compositions of materials, in particular for analyzing the crystallization kinetics and phase segregation of perovskite solar films on humidity probing.
research papers
Cylindrically bent Laue analyzer in an X-ray Raman/emission spectrometer: performance tests and a comparison with spherically bent Bragg analyzers
The performances of a spherically bent Bragg analyzer and a cylindrically bent Laue analyzer in an X-ray Raman/emission spectrometer are compared.
research papers
short communications
High-resolution imaging of organic and inorganic nanoparticles at nanometre-scale resolution by X-ray ensemble diffraction microscopy
X-ray ensemble diffraction microscopy (XEDM) is an approach to enhance the signal-to-noise ratio in high-frequency regions of scattering. This article presents direct imaging of 55 nm core–shell silica–gold nanoparticles at a 6.8 nm resolution and 19 nm nodavirus-like-particles in solution at a 2.6 nm resolution to demonstrate the high spatial resolution that is difficult to achieve by conventional coherent diffraction microscopy.
research papers
Development and testing of a dual-frequency real-time hardware feedback system for the hard X-ray nanoprobe beamline of the SSRF
We introduce a novel approach for a real-time dual-frequency feedback system which has been firstly used at the hard X-ray nanoprobe beamline of Shanghai Synchrotron Radiation Facility. It can efficiently stabilize the X-ray beam position and stability in parallel, making use of different optical systems in the beamline.
research papers
The use of ethanol as contrast enhancer in synchrotron X-ray phase-contrast imaging leads to heterogeneous myocardial tissue shrinkage: a case report
In this work, we show that the use of ethanol to increase image contrast when imaging cardiac tissue with synchrotron X-ray phase-contrast imaging leads to heterogeneous tissue shrinkage, which has an impact on the 3D organization of the myocardium.
research papers
Review and experimental comparison of speckle-tracking algorithms for X-ray phase contrast imaging
This review focuses on low-dose near-field X-ray speckle phase imaging in the differential mode introducing the existing algorithms with their specifications and comparing their performances under various experimental conditions.
research papers
Incommensurately modulated structure of Zn4Si2O7(OH)2·H2O at high-pressure
Refinement of the hemimorphite crystal structure using single-crystal synchrotron X-ray diffraction data collected at high pressure revealed a structural phase transition into an incommensurately modulated structure, accompanied by the appearance of satellite reflections.
research papers
Structure of an ex vivo Drosophila TOM complex determined by single-particle cryoEM
A 3.3 Å resolution map and structural model of the TOM complex from Drosophila melanogaster were determined by single-particle cryoEM. The complex was extracted from native membranes of the fly retina following targeted expression of a Tom40 transgene.
research papers
IUCrData IUCrData |
data reports (HO)
data reports (HM)
Triphenylphosphonium trichlorido(triphenylphosphane-κP)cobaltate(II) benzene disolvate
The central atom of the complex anion is coordinated by one triphenylphosphane and three chlorido ligands. The negative charge is balanced by a triphenylphosphonium cation. Two benzene solvent molecules are also present in the asymmetric unit.
data reports (HM)
Bis(azido-κN1)bis(2,2′-dipyridylamine-κ2N1,N1′)iron(II) monohydrate
Distortions of the octahedral {N6}-coordination of the FeII ion in the title complex Fe(dpa)2(N3)2 are described in terms of bond-length and angle variations alongside to the different kind of intermolecular hydrogen bonds between the azide ions and the dpa ligands of the complex and the water molecule of crystallization.