forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Symmetric vertex- and edge-transitive 3-periodic nets
We show that most crystal structures found in nature correspond to symmetric or supersymmetric nets, which are tolerable (tessellate). Remarkably, we find only one reported structure based on a symmetric net that is decussate (untileable)
Origin and application of the Lorentz factor in X-ray diffraction
This review treats the role of the Lorentz factor in quantitative analysis of X-ray diffraction data. The origin of the Lorentz factor, its derivation and practical implementations for a variety of modern X-ray diffraction methods are discussed.
Tiles from projections of the root and weight lattices of An
The 2D faces of the Voronoi cell of the lattice A4* are of two types: regular hexagons and squares in 4D, but project into two types of hexagons and two types of rhombuses with edges of two lengths in proportion to the golden ratio.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Mapping structure–property relationships in a 6-oxo-verdazyl radical by variable pressure crystallography and density functional theory
For the first time, the structural response to pressure of a verdazyl radical crystal has been studied. Computational modelling revealed changes in electronic and magnetic properties as a result of a structural phase transition.
Thermostructural and elastic properties of Ni3V2O8, exhibiting a kagome layer arrangement: experimental study in the range 15–1323 K
The anisotropic thermal expansion of nickel orthovanadate is examined in detail for the first time, focusing on bond lengths, bond angles, polyhedra volume and distortion.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Homopolyatomic bismuth cluster compound Bi8[AlBr4]2: synthesis, structural characterization, and electronic structure
A homopolyatomic bismuth cluster compound, Bi8[AlBr4]2 was successfully synthesized through a one-pot reaction in a Lewis acidic ionic liquid (LAIL) reaction media, and its crystal structure was characterized via single-crystal X-ray diffraction. The electronic structure investigation reveals that the compound exhibits semiconducting behavior with a wide direct band gap of 1.51 eV.
Tying up lots of loose ends: dealing with unpublished crystal structures
Over 2000 previously unpublished crystal structures have been deposited in the Cambridge Structural Database as CSD Communications in a project to make the results of public funding available to the scientific community.
Best practices in `0 K' DFT energy calculations on molecular crystal structures
This article describes best practices for `zero Kelvin' energy calculations on molecular crystals and is targeted for non-experts who would like to perform their own calculations or assess the accuracy and validity of such calculations reported in the scientific literature.
Weak interactions defining the crystal packing in the sterically demanding compound 1-(3-methylphenyl)-2-(4-nitrophenyl)-4,5-diphenyl-1H-imidazole
Crystals from a tetrasubstituted 1H-imidazole were obtained and theoretical calculations were carried out to determine electronic and structural properties. Weak interactions define the crystal packing in this sterically demanding compound. The nitro groups play a key role by their influence on the polarization of the molecule.
Can halogen atoms in coumarin derivatives affect the structure and antiproliferative activity of nickel(II) complexes?
The characterization and description of the crystal structures of new halogenated coumarin derivatives and their nickel(II) complexes are reported alongside their anticancer activity.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
Influence of heme and pH on the oligomeric states of Brucella melitensis bacterioferritin
In this work, Brucella melitensis Bacterioferritin (BmBfr) oligomerization was studied using X-ray crystallography, size exclusion chromatography and thermal shift analysis. Those techniques allowed the characterization of both apo- and holo-BmBfr, highlighting heme and pH impact on the oligomerization mechanism.
An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM
We present a fully automated, unattended cryo-EM pipeline that serves as an on-the-fly diagnostic tool, enabling rapid data quality assessment and informed decision-making to maximize data-collection efficiency.
Dose-dependent structural and electron-density features in the lytic polysaccharide monooxygenase NcAA9D
A series of 36 structures of the Neurospora crassa LPMO NcAA9D were refined against X-ray crystal datasets collected with increasing dose from a single crystal to provide insights into dose-dependent structural changes at the active site of the enzyme. The findings underscore the importance of minimizing accumulated dose during cryo-X-ray crystallography studies of lytic polysaccharide monooxygenases to prevent misinterpretation of radiation damage-related electron density features.
Protein Data Bank (PDB) Archive: A New Architecture (Beta) for Scalable, PDBx/mmCIF-Based Data Distribution
wwPDB has extended PDB IDs to 12 characters with a prefix "pdb_" followed by 8 alphanumeric characters in lower case (e.g., pdb_1000axyz). A Beta version of the PDB Archive (files-beta.wwpdb.org), with extended PDB IDs and an improved directory structure is now available to help communities adopt extended PDB IDs and PDBx/mmCIF format.
Crystal structure of endo-β-1,6-galactanase from Streptomyces avermitilis
The crystal structure of Streptomyces avermitilis endo-β-1,6-galactanase Sa16Gal30A belonging to GH30 subfamily 5 reveals the first structural framework for endo-β-1,6-galactanase. The β-1,6-galactobiose-bound complex identifies the catalytic subsites and a distal secondary sugar-binding site, providing insight into β-1,6-galactan recognition.
Crystal structure of pilus-specific sortase from Enterococcus faecalis reveals both open and closed conformations: insights into loop dynamics and substrate recognition
The open and closed lid conformational states of class C sortase (SrtC), which catalyzes the polymerization of endocarditis and biofilm-associated pili (Ebp) in Enterococcus faecalis, were captured in a single crystal. Communication between the flexible lid and the dynamic active-site (β7–β8) loop, along with their synchronized motions, regulates access to the active site for primary and secondary substrate binding.
Interactive segmentation of membrane and membrane-mimic densities in cryo-EM maps
SURFER performs automated segmentation of contextual membrane and membrane-mimic density in cryo-EM maps to enable robust separation of macromolecular signal from surrounding detergent or lipid-membrane features. It is conveniently distributed as a plugin for UCSF ChimeraX, allowing interactive application within standard map-visualization workflows.
more ...
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Crystal structure of the (1R,2S,5R) diastereomer of acoltremon, C18H27NO2, from synchrotron powder diffraction data and density functional theory calculations
The crystal structure of the (1R,2S,5R) diastereomer of acoltremon has been solved and refined using synchrotron X-ray powder diffraction data, and optimized using density functional theory techniques.
From an unusual organotin(IV) coordination compound to the first ionic organic–inorganic mixed-valent tin(IV)–tin(II) compound
The previously unknown 1:3 complex of isopropylstannate(IV) iodide, iPrSnI3, and pyridine N-oxide, PyNO, partially decomposes upon prolonged storage in deuterochloroform, forming a novel mixed-valent organic–inorganic tin(IV) and tin(II) compound. Both compounds exhibit an ionic structure and contain an octahedral [iPrSnI2(pyNO)3] + ion, in which the three Lewis base molecules are arranged in a facial configuration and the two iodine atoms are in a cis position, whilst charge balancing is ensured in the first compound by an isolated iodide ion and in the second by a triiodidostannate(II) ion, [SnI3]−, which is linked via tetrel bonds to one-dimensional chains.
Crystal structure and Hirshfeld surface analysis of 10-([2,3′-bithiophen]-5′-yl)-5,5-difluoro-5H-4λ4,5λ4-dipyrrolo[1,2-c:2′,1′-f][1,3,2]diazaborinine
The molecular conformation of the title compound is consolidated by intramolecular C—H⋯S interactions, which form an S(6) ring. The molecules are linked in the crystal by C—H⋯F interactions into a three-dimensional network.
A new supramolecular cobalt(II) complex based on 1,10-phenanthroline and 4-nitrophthalate ligands
A binuclear cobalt(II) complex assembled from 1,10-phenanthroline and 4-nitrophthalate ligands features carboxylate-bridged metal centres in distorted octahedral coordination environments. The crystal packing is further consolidated by O—H⋯O hydrogen bonds and aromatic π–π stacking interactions, resulting in a three-dimensional supramolecular network.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Crystal structure of Legionella pneumophila glycosidase effector LegY
We report the 1.43 Ã… crystal structure of Legionella pneumophila GH15 glycosidase effector LegY, a single-domain protein with a canonical (α/α)â'†-barrel catalytic domain that is structurally and phylogenetically highly similar to fungal glucoamylases, and identify its conserved catalytic residues Glu206 and Glu405 that support a GH15-characteristic single-displacement catalytic mechanism; these findings provide pioneering structural and evolutionary insights into LegY, laying a foundation for understanding its role in L. pneumophila infection and the evolutionary dynamics of GH15 family enzymes.
WebCalEM: a browser-based tool for routine and accurate pixel-size calibration in cryo-EM
WebCalEM is a browser-based, install-free application that performs routine cryo-EM pixel-size calibration directly from gold or graphene oxide reflections in standard sample-support grids using subpixel Fourier-space peak localization; it reproduces the precision of established command-line calibration tools while removing the installation barrier and supporting retrospective per-region calibration on archived datasets.
| Journal of Applied Crystallography Journal of Applied Crystallography |
Separating the size distributions for interstitial and vacancy-type dislocation loops using integral X-ray diffuse scattering
A rigorous integral X-ray diffuse scattering (XRDS) method is presented for experimentally determining separate size distributions for interstitial and vacancy-type dislocation loops in irradiated single-crystalline materials. This new capability is facilitated by a numerical formulation for directly evaluating the integral XRDS intensities associated with individual defect clusters, and the technique is demonstrated by analyzing measurements of ion-irradiated tungsten that show distinct size distributions for the two loop types.
Improving polarized neutron reflectometry experiments on soft-matter samples: optimization of the solid substrate structure
We demonstrate a Fisher information-based strategy for optimising the solid substrate structure in polarised neutron reflectometry experiments on soft-matter samples. The approach identifies magnetic reference layer designs that improve experimentally accessible information and provides a general framework for more efficient reflectometry experiment planning.
Thermal expansion of FeWO4 (ferberite) and FeWO4:Fe2WO6 (7:1): a comparative X-ray and neutron diffraction study
Temperature-dependent single-crystal X-ray, powder X-ray and neutron diffraction measurements reveal the thermal expansion behavior of FeWO4 from 2 to 1123 K. Significant differences between natural ferberite and a FeWO4:2WO6 composite highlight the influence of multiphase and microstructural effects on derived thermoelastic parameters.
Rust-accelerated powder X-ray diffraction simulation for high-throughput and machine-learning-driven materials science
XRD-Rust is a Rust-accelerated reimplementation of the computational core of the pymatgen powder X-ray diffraction calculator that preserves full Python workflow compatibility while significantly improving performance for large-scale simulations. Benchmarks on large crystallographic databases show average speedups of 4–6× and peak gains of up to 719×, enabling efficient high-throughput dataset generation and faster interactive diffraction analysis.
Initial characterization of a prototype target–moderator–reflector assembly for an electron-driven compact accelerator-driven neutron source at CERN's CLEAR facility
This article presents the design, installation and first experimental testing of a novel prototype target–moderator–reflector (TMR) assembly for a compact accelerator-driven neutron source (CANS) driven by a 35 MeV electron beam.
Quantifying resolution in pink-beam dark-field X-ray microscopy: experiments and simulations
A quantitative comparison between pink-beam and monochromatic dark-field X-ray microscopy (DFXM) shows that pink-beam DFXM offers up to two orders of magnitude higher flux and improved signal-to-noise ratio for time-resolved imaging, at the expense of an approximately tenfold loss in angular resolution. The results establish performance criteria and experimental strategies for optimizing pink-beam DFXM in studies of microstructure and strain evolution in crystalline materials.
Family of (N×H)-polytypes with La2WO6-related stoichiometry
The structure and composition of metastable (N×H)-polytypes, N ∈ {3, 4, 5, 6, 7}, belonging to the family of La2WO6-related tungstates, are revealed by means of a La–O–W ternary convex hull construction based on density functional theory.
Temperature evolution of the high-harmonic magnetic modulations in DyFeO3
The temperature evolution of the high-harmonic incommensurate magnetic ordering of Dy3+ in DyFeO3 orthoferrite is compared with the literature results on the soliton lattice of TbFeO3 observed in an external magnetic field.
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| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
Teaching about the relativistic background of synchrotron radiation: some intriguing aspects with strong didactic implications
Explaining synchrotron radiation properties often requires using the speed of light with respect to a moving object like a detector, which may not be the invariant c. This surprising fact also leads to a rarely explored link between relativity and quantum mechanics.
Structured illumination for surface-resolved grazing-incidence X-ray scattering
We introduce a method combining structured illumination with grazing-incidence X-ray scattering and computational imaging to resolve local structural details. Demonstrated on an organic semiconductor thin film, this method captures local features without sample rotation, enabling detailed analysis of material properties critical for advanced material design.
Wavefront Sensing at a high-repetition-rate X-ray free-electron laser
We demonstrate a fast, robust, and sensor-free approach to X-ray Speckle Tracking that enables shot-to-shot wavefront characterization at high-repetition-rate X-ray Free Electron Lasers. Our measurements reveal a hierarchy of wavefront fluctuations indicative of instabilities in the accelerator and beamline optics at the European XFEL.
In situ mapping of iron oxidation in laminar metal fuel flames using X-ray absorption spectroscopy
For the first time an iron metal flame was mapped by in situ X-ray absorption spectroscopy. Strong gradients in oxidation state and phase composition across the metallic core and the flame front were found with FeO peaking at the visible flame front and Fe3O4 forming further beyond.
The LIQUID endstation for in situ spectro-electrochemical studies on energy materials @ BACH beamline
A new endstation for soft X-ray absorption spectroscopy in liquid environments has been installed at the BACH beamline of Elettra Sincrotrone, Trieste. The setup includes upgraded and newly developed cells for a range of soft-X-ray experiments at solid/liquid interfaces, including studies on battery materials.
Synchrotron X-ray tomography and spectroscopy in numismatics: disclosing counterfeit practices in mediaeval silver coins
Advanced synchrotron radiation-based imaging and spectroscopic techniques were used to investigate the distribution and nature of mercury in numismatic artifacts, with a particular focus on its role in historical counterfeiting practices.
Sagittal collimating diaboloid: a new grazing-incidence mirror surface for higher-throughput resonant inelastic X-ray scattering spectrometers
We present the analytic equations for a new grazing-incidence mirror surface, a sagittal collimating diaboloid, and illustrate its advantages for higher-throughput soft X-ray spectrometer design.
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Towards light-coupled sample preparation for time-resolved cryoEM studies
We present an integrated sample preparation workflow that combines photocaged ligand activation and controlled triggering, coupled with rapid vitrification to enable time-resolved cryoET studies on bacterial chemotaxis at millisecond timescales.
| IUCrData IUCrData |
rac-1-(2-{[(Benzyloxy)carbonyl]amino}cyclohexyl)pyrrolidin-1-ium chloride
The crystal structure of C19H26N2O2+·Cl−, an intermediate in the synthesis of the selective κ-opioid receptor agonist U50,488, is reported. The compound crystallizes with both (S,S)- and (R,R)-enantiomers in the unit cell. In the crystal, the chloride ion facilitates the formation of enantiomeric pairs through N—H⋯Cl hydrogen bonds.

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