forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Learning lattice parameters from powder X-ray diffraction data using invariants
We introduce a smooth, invariant representation of the reciprocal lattice that avoids the discontinuities of unit-cell parameterizations, and show it improves machine-learned lattice parameter prediction from powder X-ray diffraction data.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Oriented intergrowth of the pincer complex FeiPrPCP(CO)(COPr)(NCtBu) and its hemi-pentane solvate
The hemi-pentane solvate of the pincer complex FeiPrPCP(CO)(COPr)(NCtBu) loses solvent in a topotactic reactions resulting in an oriented intergrowth of the hemi-solvate and the non-solvate. The two domains can be considered as polytypes.
Sheared structure Pb4Sr14Fe23O52 solved by three-dimensional electron diffraction combined with atomic scale STEM imaging
The crystal structure of Pb4Sr14Fe23O52, a phase synthesized in 2006 whose structure remained unsolved so far, has been fully determined by combining three-dimensional electron diffraction with atomic resolution STEM imaging. The study reveals a commensurately modulated sheared structure derived from the parent ferrite Sr4Fe6O13–δ.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Ionic liquid-assisted synthesis, crystal structures, and electronic structure characterization of novel hybrid organic–inorganic chloride compounds [BMIm]m[MCln] (M = Cd, Se, Sn, Bi; n = 4, 6; m = 2, 3)
Four ionic-liquid-derived hybrid chloride salts containing 1-butyl-3-methylimidazolium, [BMIm]+, cations and isolated [CdCl4]2−, [SeCl6]2−, [SeCl6]2−, and [BiCl6]3− anions were structurally characterized, and electronic structure calculations yield calculated band gaps ranging from 2.91 to 4.44 eV.
Copper and cobalt complexes with famotidine
The structures of a famotidine–copper(II) chloride complex and a famotidine propionic acid–cobalt(II) tetrachloride are reported. These compounds have implications in the colorimetric measurements on Paper-Based Analytical Devices (PADs).
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
Crystal structures of SARS-CoV-2 main protease and its complex with PBI-0451
Crystal structures of SARS-CoV-2 main protease (Mpro) and its complex with PBI-0451 expand the conformational landscape of Mpro and offer structural guidance for the design of Mpro-targeted antiviral drugs.
Structural identification of endogenous Escherichia coli proteins from heterogeneous cryo-electron microscopy datasets
Cryo-EM analysis of a size-exclusion chromatography fraction initially attributed to an oligomeric form of a recombinant OGFOD1 protein expressed in Escherichia coli instead revealed three endogenous E. coli proteins: ArnA, GTP cyclohydrolase I and glycerol dehydrogenase. The three protein assemblies had comparable predicted hydrodynamic radii, which plausibly explained their partial coelution during size-exclusion chromatography, indicating that rigid, symmetric endogenous complexes can dominate heterogeneous cryo-EM datasets and highlighting the value of systematic analysis of off-target particle populations.
Experiences developing structural biology tools with AI coding assistance
Artificial intelligence (AI)-assisted development can significantly reduce the effort of coding scientific tools and software. At the same time, the approach requires detailed oversight, as well as domain knowledge and codebase expertise. The conditions under which AI assistance is reliable, the kinds of mistakes coding LLMs can make and why expert judgment is necessary are examined through the example of developing a new CIF file parser that focuses particularly on speed of execution.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Crystal structure and Hirshfeld surface analysis of an erbium(III) coordination polymer based on 2,3,5,6-tetrabromobenzene-1,4-dicarboxylate ligand
The crystal structure and Hirshfeld surface analysis of a new three-dimensional erbium(III) coordination polymer based on 2,3,5,6-tetrabromobenzene-1,4-dicarboxylate ligand is reported.
Crystal structure and Hirshfeld surface analysis of 6-methyl-2,3-dihydro-1,3-benzothiazol-2-iminium 3-(1,3-benzothiazol-2-ylsulfanyl)propanoate
In the title salt, proton transfer from the carboxylic acid to the benzothiazole ring N atom generates a 6-methyl-2,3-dihydro-1,3-benzothiazol-2-iminium cation and a 3-(1,3-benzothiazol-2-ylsulfanyl)propanoate anion. The ions are linked by N—H⋯O hydrogen bonds into R22(8) motifs, which are further connected into layers parallel to (100).
Crystal structure and Hirshfeld surface analysis of 2-(dimethoxymethyl)phenyl (3aRS,6SR,7RS,7aSR)-1-oxo-2-phenyl-1,2,3,6,7,7a-hexahydro-3a,6-epoxyisoindole-7-carboxylate
In the crystal, the molecules are connected by C—H⋯O interactions, creating a three-dimensional framework. The molecules are further connected by C—H⋯π interactions, forming layers parallel to the (101) plane.
Synthesis, crystal structure and Hirshfeld surface analysis of (E)-5-methoxy-2-[(p-tolylimino)methyl]phenol
The crystal structure of the Schiff base compound (E)-5-methoxy-2-[(p-tolylimino)methyl]phenol is described, highlighting its non-planar molecular conformation and intramolecular O—H⋯N hydrogen bond. Hirshfeld surface and energy-framework analyses reveal that H⋯H contacts dominate the crystal packing, with dispersion interactions contributing significantly to the stabilization of the molecular pairs.
Crystal structure and Hirshfeld surface analysis of ethyl 4-hydroxy-1-methyl-5-oxo-2-(thiophen-2-yl)-2,5-dihydro-1H-pyrrole-3-carboxylate
The title ester crystallizes with equal numbers of R and S enantiomers related by inversion symmetry. Molecules are linked by intermolecular O—H⋯O hydrogen bonds to form one-dimensional chains, which are further supported by weak C—H⋯O interactions, giving rise to a three-dimensional supramolecular architecture.
Synthesis and crystal structure of ethyl 2-{[4-amino-5-cyano-6-(3,4-dimethoxyphenyl)pyrimidin-2-yl]sulfanyl}acetate
In the title compound, the pyrimidine ring angle at the C atom between the N atoms is very wide, whereas the angles at the ring N atoms are narrow. The molecules are linked by N—H⋯N≡C and N—H⋯O=C hydrogen bonds, and by short intercentroid contacts between pairs of pyrimidine rings.
Structures of the reaction products of lithium metal with N,N-dimethylacetamide and tetramethylurea
The reaction of lithium metal with dry N,N-dimethylacetamide and N,N-tetramethylurea produced crystals of the lithium N,N-dimethylacetoacetamidate and N,N-tetramethylurea produces crystals of the lithium bis-1,2-(N,N-dimethylamino)ethan-1-one-2-olate.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Recombinant versus native botulinum neurotoxin type A: structural and pharmacodynamic comparison
For the first time, the recombinant core botulinum neurotoxin type A (BoNT/A) expressed in Escherichia coli and nicked in vitro is shown to be structurally identical to native BoNT/A from Clostridium botulinum, enabling direct activity comparison between the recombinant product and the native toxin.
| Journal of Applied Crystallography Journal of Applied Crystallography |
A deep learning approach to gap filling for synchrotron SAXS and WAXD patterns
This study proposes a machine learning-based network for gap filling in small-angle scattering and wide-angle diffraction of X-ray patterns, which can reconstruct missing regions in two-dimensional patterns to recover the sample's true structural information.
Non-destructive 3D characterization of microtextured regions in the bulk of Ti-6 Al-4 V alloy
Spatially resolved texture maps of Ti-6 Al-4 V obtained by texture tomography show strong agreement across independent scans and with EBSD [electron backscatter diffraction] characterization, validating the single-axis reconstruction procedure. The resulting 3D maps reveal sharply textured α-phase domains whose orientations and morphologies reflect the rolled microstructure.
TorchRef: an open-source PyTorch framework for crystallographic refinement
TorchRef is an open-source PyTorch-based crystallographic refinement framework that exposes all refinable parameters to automatic differentiation, accelerates structure-factor evaluation by about two orders of magnitude on a GPU, and enables novel workflows such as direct refinement against amplitude differences in time-resolved crystallography.
Experimental observation of grazing-incidence X-ray back-diffraction with large angular dispersion
The first experimental observation of grazing-incidence X-ray back-diffraction validates both the dynamical description and a simple geometrical interpretation of its exceptionally large angular dispersion.
SAS_MoCa: software for small-angle scattering data analysis of large unilamellar vesicles
SAS_MoCa is an open-source Python package for quantitative analysis of small-angle scattering (SAS) data from large unilamellar vesicles, combining a compositional scattering density profile model of lipid bilayers with a separated form factor description of vesicle size and polydispersity in a Bayesian framework. It yields full posterior parameter distributions, uncertainties and correlations from single SAS curves, enabling reproducible and extensible high-throughput membrane structural characterization.
Dynamical refinement against 3D-ED data in Olex2–AutoChem using the N-Beam approach
Dynamical diffraction effects in electron diffraction can now be modelled directly within Olex2–AutoChem using data processed with CrysAlisPro, enabled by a new N-Beam refinement method based on the Bloch-wave formalism. This workflow allows dynamical refinement of integrated rotation electron diffraction intensities, improving structural models and enabling determination of absolute structure in a streamlined, accessible environment.
CView: a Rust-based integrated environment for inorganic crystallographic analysis and high-fidelity visualization
CView is an open-source, Linux-native crystal structure visualization and analysis program written in Rust with GTK4 and Cairo. It integrates ball-and-stick and coordination-polyhedron rendering, bond-valence-sum analysis against the IUCr bvparm2020 parameter set, powder X-ray diffraction simulation, space-group detection, automatic Bravais classification with Setyawan–Curtarolo high-symmetry k-paths, Voronoi construction of the first Brillouin zone, Miller-index slab generation, CHGCAR charge-density visualization and probe-based void analysis in a single desktop application aimed at the pre- and post-processing of plane-wave density-functional-theory calculations.
Bridging the small-angle X-ray scattering–X-ray diffraction gap in disordered layered materials: the CLADIFFMOD unified framework
A unified multi-scale framework is proposed for the consistent analysis of small-angle X-ray scattering (SAXS) and X-ray diffraction (XRD) in disordered clay minerals, combining morphology, stacking and turbostratic contributions within a single formalism. The approach resolves long-standing inconsistencies in the SAXS–XRD junction and provides a physically interpretable method for extracting structural parameters across multiple length scales.
| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
A versatile on-axis visualization system for the macromolecular crystallography beamline BM07 at the ESRF
A compact on-axis microscope installed on the endstation of the macromolecular crystallography beamline BM07 at the ESRF is described. The system combines dual-magnification on-axis sample visualization with on-axis laser injection and fluorescence measurements in back-scattering geometry. Its integration within the beamline control software is presented. The device is intended to support routine sample centring, light-triggered kinetic crystallography and high-pressure crystallography experiments.
Steady-state diode-laser photocrystallography at the P11 beamline (PETRA III): proof-of-concept measurements on an Fe(II) metallogrid complex
A compact pulsed diode-laser excitation platform was implemented at the P11 beamline of PETRA III for steady-state molecular photocrystallography. Post-irradiation single-crystal diffraction measurements on an Fe(II) metallogrid revealed small but correlated structural changes consistent with partial spin-state redistribution, demonstrating a practical route for diode-laser-based photocrystallography at synchrotron beamlines.
Construction and performance of the millisecond-to-second QXAFS platform at SSRF BL11B for in situ dynamic characterization
A millisecond-resolution QXAFS platform has been established at SSRF BL11B for in situ and operando X-ray absorption studies. The platform demonstrates spectrum acquisition times down to 10 ms for XANES and 16.7 ms for full-range EXAFS, while quantitative analysis of finite-response and statistical limits indicates practically recommended monochromator oscillation frequencies of approximately 4 Hz for full-range EXAFS (∼1000 eV scan window) and approximately 30 Hz for XANES (∼130 eV scan window).
Time-resolved coherent X-ray scattering analysis of nanorod colloids: dynamics and photon-statistical effects in angular X-ray cross-correlation analysis
A statistical framework combining angular X-ray cross-correlation analysis, principal component analysis and photon-counting simulations is presented for evaluating the detectability of orientational fluctuations in time-resolved coherent X-ray scattering experiments.
High-resolution monochromator for the 8.41 keV 169Tm nuclear resonance
A high-resolution monochromator for the 8.41 keV 169Tm nuclear resonance is presented enabling nuclear resonant scattering on Tm compounds at PETRA III beamline P01. Hyperfine parameters and phonon densities of states of metallic Tm and Tm2O3 are studied.

Quantum refinement can be used to improve time-resolved crystallographic structures
We show that quantum refinement can be used to improve the interpretation of structures from time-resolved serial crystallography. Examples are shown for bacteriorhodopsin, xylose isomerase and fluoroacetate dehalogenase, leading to better interpretations and improved structures in terms of difference maps, real-space Z-scores and strain energies.
Quantification in wavelength-resolved neutron imaging: exemplified using polyethylene to mimic hydrogen in stainless steel
We have developed a comprehensive quantitative methodology for analysing wavelength-resolved neutron transmission spectra and here demonstrate its application to metallic alloys. The approach integrates Monte Carlo simulations, which serve as a digital twin of the experiment, with NCrystal-based least-squares fitting. By using open-source software, this method resolves and quantifies trace element contributions, as demonstrated here for detecting hydrogen-equivalent concentrations below 10 wt p.p.m. in stainless steel.
The overlooked ZIF: reviving [Cu(imidazolato)2] from 1960s literature
This study investigates [Cu(im)2], a zeolitic imidazolate framework (ZIF) originally discovered in the 1960s but widely overlooked, by characterizing its B polymorph with a sodalite topology. By measuring its first gas-adsorption isotherms, we demonstrate that the origins of modern ZIFs lie much earlier than previously recognized.
Comparison of human and bacterial monofunctional catalase structures obtained by electron cryomicroscopy
Three high-resolution catalase structures have been determined by cryoEM, two bacterial and one human. Comparison of the haem and NADPH cofactor binding, water molecules and channel structure between these and previous X-ray crystal structures provides insight into the different features of the structures and the strengths of the methodologies.
| IUCrData IUCrData |
Methyl 3-[(trimethylsilyl)ethynyl]benzoate
The title compound was synthesized via a Sonogashira Coupling reaction using cis-[PdCl2 (PPh3)2] and 1 mole % CuI. The two molecules in the unit cell pack utilizing weak intermolecular hydrogen-bonding interactions between carbon H atoms and neighboring oxygen atoms in the methyl benzoate group.
(Acetato-κO)bis(4,4′-dimethoxy-2,2′-bipyridine-κ2N,N′)copper(II) 3,5-bis(2,4-dinitrophenyl)-4-nitropyrazolate monohydrate
The complex cation, with a conordination environment of the CuII atom intermediate between square-pyramidal and trigonal-bipyramidal, crystallizes with a bulky pyrazolato anion and partly disordered solvent molecules.
2-Azido-N-(o-tolyl)acetamide
In the title molecule, the inner C—N—C—C portion is planar and the phenyl ring and azide group are rotated to be well out of this plane. In the crystal, N—H⋯O and C—H⋯O hydrogen bonds plus C—H⋯π(ring) interactions form chains of molecules extending along the a-axis direction.
(η6-1-Isopropyl-4-methylbenzene)bis(η1-pyridin-2-ylethynido-κC)(trimethylphosphane-κP)ruthenium(II)
The title complex, [Ru(C7H4N2)2(C10H14)(C3H9P)] or (p-cym)Ru(C2-2py)2(PMe3), where p-cym = η6-1-isopropyl-4-methylbenzene and C2-2py = η1-C-pyridin-2-ylethynide, comprises a pseudo-octahedral RuII atom with p-cym occupying one face of the octahedron and the other face comprised of monodentate PMe3 and two η1-C2-2py ligands. In the crystal, hydrogen bonding involving one nitrogen donor and one C—H acceptor from each pyridine ring generates dimers propagating along the a-axis direction via supporting C—H⋯π interactions.
(5,10,15,20-{2,2′,2′′,2′′′-[(1,21,23,25-Tetrapentyl-2,20:3,19-dimetheno-1H,21H,23H,25H-bis[1,3]dioxocino[5,4-i:5′,4′-i′]benzo[1,2-d:5,4-d′]bis[1,3]benzodioxocin-7,11,15,28-tetrayl)tetrakis(oxyethane-2,1-diyloxy)]tetraphenyl}porphyrinato)nickel(II) chloroform monosolvate
Crystal structure of an NiII–porphyrin-based macrocyclic compound with a chloroform chlathrate.
trans-Diaquabis(pyridin-2-yl thiophen-2-yl ketone-κ2N,O)zinc(II) bis(tetrafluoridoborate)
The ZnII atom in the title complex cation (site symmetry 1) shows a pseudo-octahedral coordination by two aqua ligands and two chelating ligands bound through the carbonyl O and pyridyl N atoms, which is consistent with other late first-row transition-metal structures of this ligand with CoII, NiII, and CuII.

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