forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
Dynamics and entropy of dynamical systems arising from two-dimensional random substitutions
We study the dynamics and entropy of dynamical systems arising from two-dimensional random substitutions, exhibiting both local disorder and global order, as shown by positive topological entropy and the presence of non-trivial pure-point components in the diffraction spectrum.
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
Crystal structure of a new selenite-sulfate compound Ag4Cu(SeO3)2(SO4)
A new selenite–sulfate compound Ag4Cu(SeO3)2(SO4), was successfully obtained through a conventional hydrothermal method. The compound exhibits[adopts a] layered structure comprised of 1D chains in the bc plane[This is not consistent with the abstract. Please check which is correct and revise accordingly]. [would be better if the direction was specified].
Crystal structure of eveslogite revealed by electron diffraction techniques: a titanosilicate mineral with structurally and compositionally distinct nanoscopic tubular units
The study of the mineral eveslogite reveals a unique structure based upon two types of nanoscopic heterosilicate-based tubules.
Crystallography of organic energetic materials: thermoelastic properties and equation of state
Thermoelastic properties and equation-of-state parameters of 16 organic energetic molecular crystals are systematically compiled and compared from temperature- and pressure-dependent crystallographic data. The analysis highlights anisotropic thermal expansion and compressibility and identifies structural factors governing the mechanical response of these molecular crystals.
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Experimental and theoretical investigation of a 5-iodo-6-methyluracil derivative as a key intermediate for Elagolix synthesis: crystal structure, Hirshfeld surface analysis and DFT calculations
The crystal structure of a key intermediate for Elagolix synthesis was determined and systematically investigated. Structural analysis indicates that the molecule adopts a noticeably twisted `V'-shaped conformation. Weak interaction analyses and 3D energy frameworks demonstrate that the supramolecular network is co-operatively maintained by classical N—H⋯O hydrogen bonds and predominant intermolecular dispersion forces.
Hydrogen bonding in cocrystals of trans-NiII(hfac)2(H2O)2
Two cocrystals of trans-NiII(hfac)2(H2O)2 containing cocrystallized water or 1,2-dimethoxybenzene were characterized by single-crystal X-ray diffraction. The hydrogen-bonding networks in each cocrystal were compared to previously reported structures, revealing that NiII(hfac)2(H2O)2 is capable of forming a variety of hydrogen-bond network motifs depending on the nature of the coformers in the crystal structure. Cocrystallization of 1,2-dimethoxybenzene was found to inhibit the formation of extended hydrogen-bond networks.
Crystal structure, intermolecular interactions, Hirshfeld surface analysis, theoretical studies and biological evaluation of (E)-5-(benzyloxy)-2-{[(2,5-dimethoxyphenyl)imino]methyl}phenol, a new Schiff base
The title Schiff base compound was synthesized by the reaction of 4-(benzyloxy)-2-hydroxybenzaldehyde and 2,4-dimethoxyaniline in a 1:1 ratio. In the crystal, there are two independent molecules in the asymmetric unit and both molecules were refined as having a mixture of the imino–phenol and iminio–phenolate tautomeric forms. The compound exhibits significant inhibition properties.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
On-grid enrichment strategies in cryo-EM: affinity-functionalized supports for low-abundance and challenging targets
Affinity-functionalized and engineered cryo-EM supports are transforming specimen preparation by enabling on-grid enrichment and improved recovery of challenging biological assemblies. This review provides a critical assessment of current platforms, emerging technologies, and the remaining challenges that must be addressed to establish affinity-based specimen preparation as a routine component of cryo-EM workflows.
Perspectives for pharmaceutical screening at XFEL sources using the example of Lassa virus endonuclease
To facilitate structure-based drug development, XFEL sources are of paramount interest. Here, we analyse the feasibility and data quality of SFX compound screening at Linac Coherent Light Source and compare it with PETRA III synchrotron experiments. For one Lassa virus model protein, we determined new crystal structures with two inhibitors.
A short history of Auto-Rickshaw
Auto-Rickshaw is an example of practical, decision-driven automated macromolecular structure determination from crystallographic diffraction data. This review traces its development at the EMBL Hamburg/DESY beamline environment, where rapid validation of diffraction experiments was essential, through its expansion into a general platform for automated structure solution and its continuing relevance to beamline automation.
Radiation damage in serial femtosecond crystallography studied in hemoglobin
Protein structures determined by serial femtosecond crystallography are indistinguishable when measured with 3 and 10 fs X-ray pulses, indicating no structural benefit from further shortening the pulse duration under the studied conditions.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Crystal structure of (4-amino-3,5-dichloropyridine-κN1)dioxidobis(pentane-2,4-dionato-κ2O,O′)uranium(VI) methanol hemisolvate
The asymmetric unit of the title uranyl complex, [U(C5H7O2)2O2(C5H4Cl2N2)]·0.5CH3OH or [UO2(acac)2(4-amino-3,5-dichloropyridine)]·0.5CH3OH, contains two crystallographically independent uranyl(VI) complex molecules and one methanol solvent molecule. Each UVI atom adopts a UNO6 pentagonal–bipyramidal coordination geometry, in which two uranyl O atoms occupy the axial positions, whereas four O atoms from two chelating bidentate acac ligands and one N atom from a 4-amino-3,5-dichloropyridine ligand define the equatorial plane. In the crystal, the methanol solvent molecule is linked to the amino group in the coordinated ligand by an intermolecular N—H⋯O hydrogen bond, which is likely to contribute to the low-symmetry crystal arrangement.
Synthesis and structure of 5-[(4-fluorobenzyl)amino]isophthalic acid featuring O—H⋯O and N—H⋯π interactions
In the title compound, the dihedral angle between the aromatic rings is 77.78 (8)°. In the crystal, the molecules are linked into zigzag ribbons propagating along the [210] direction by pairwise O—H⋯O hydrogen bonds through their two carboxylic acid groups to generate centrosymmetric R22(8) dimers in each case. In addition, molecules are connected via pairwise N—H⋯π interactions between the NH groups and the fluorobenzene rings.
Crystal structures of products from the BBr3-promoted demethylation of 3-(methoxymethyl)-6-phenyl-1,2,4,5-tetrazine
A (methoxymethyl)-substituted 1,2,4,5-tetrazine was treated with BBr3 to obtain both the (hydroxymethyl)- and (bromomethyl)-substituted 1,2,4,5-tetrazine; all three compounds were characterized by single-crystal X-ray diffraction measurements, which revealed the formation of intermolecular π–π stacks for all tetrazines, as well as hydrogen-bonded dimers of the tetrazine alcohol.
Molecular and crystal structure of (Z)-N-allyl-3-(allylimino)-3H-isoindol-1-amine
The title molecule is present in its 3-imino-3H-isoindol-1-amine tautomeric form. In the crystal, intermolecular N—H⋯N hydrogen bonds lead to the formation of infinite chains propagating parallel to [001].
Trigonal crystal structure of a phosphate belonging to the ABW-type zeolite family: RbCoFe(PO4)2
In the title phosphate, all of the cations are located on tetrahedral sites, and the three different tetrahedra are linked by their vertices to form a double layer stacked along the c-axis direction. The plane formed by the rubidium atoms is sandwiched between the double layers.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Structure of recombinant Thermoascus aurantiacus xylanase TaXyn10 with an authentic N-terminal pyroglutamate
The high-resolution structure of the T. aurantiacus xylanase TaXyn10 expressed in E. coli shows that recombinant production combined with split-intein-based purification recovers the native fold of TaXyn10 and permits the formation of an N-terminal pyroglutamate. These results demonstrate that this approach can enable recombinant proteins to adopt their native mature state in E. coli, including physiologically relevant post-translational modifications such as N-terminal pyroglutamate formation.
Sulfate-compatible density marks an intratrimeric junction in the Escherichia coli dihydrolipoamide succinyltransferase catalytic domain
The crystal structure of the catalytic domain of E. coli dihydrolipoamide succinyltransferase in space group F432 identifies a sulfate-compatible intratrimeric junction associated with Lys196 and α1-helix positioning near the active-site pocket.
Structural insights into a putative BLF1-like deamidase from Methylomonas sp. Kb3
The crystal structure of a putative BLF1-like deamidase from Methylomonas sp. Kb3 reveals conservation of the catalytic cysteine–histidine dyad despite extensive sequence variation. These findings expand the diversity of BLF1-like deamidases and provide a structural framework for understanding their evolution and potential functions.
| Journal of Applied Crystallography Journal of Applied Crystallography |
PolymCrystRefine: a workflow for diffraction analysis of polymer crystals
An automated workflow, PolymCrystRefine, has been developed for polymer crystal structure refinement from fiber diffraction data, combining joint force-field and intensity-gradient optimization, an ROI-based data exploitation scheme, and a genetic algorithm guided by fiber-specific constraints.
Iterative phase retrieval in macromolecular crystal diffraction using the gradients of intensities
Incorporating molecular intensity gradients into an iterative projection algorithm enables model-free electron-density reconstruction even for low-solvent macromolecular crystals.
Development of advanced borosilicate glass coating for surface modification of neutron experimental tools
Sodium-free borosilicate glass thin films synthesized from diphenylborosiloxane exhibit enhanced hydrophobicity, offering a promising solution for durable surface modification of neutron experimental tools.
Commissioning of a versatile grazing-incidence platform at a very small angle neutron scattering instrument for investigating nano-to-microscopic colloidal assembly
A grazing-incidence platform has been commissioned at the very small angle neutron scattering instrument of the China Spallation Neutron Source, with accessible length scales covering three orders of magnitude. The functions of this platform are validated by its ability to distinguish the in-plane assembly patterns of colloidal thin films fabricated by different coating techniques, and composed of structures with sizes ranging from 100 nm to several micrometres.
Determination of partial atomic charges from single-crystal X-ray diffraction by refinement of occupancy of spherical atoms
Experimental measurement of partial atomic charge using standard crystallographic data is accessible to a wide range of experimental practitioners of single-crystal X-ray diffraction without the need for high-angle data or specialized software.
Jungfraujoch: 38 GB s−1 real-time serial crystallography – data acquisition and live indexing feedback
Jungfraujoch is a single-node FPGA–GPU server that enables 38 GB s−1 real-time crystallography data acquisition using the PSI JUNGFRAU 9M detector at 2 kHz, with simultaneous on-the-fly processing, spot finding and indexing, and optional adaptive data reduction during continuous data streaming.
Deterministic segmentation of grains in dense Laue microdiffraction datasets
This work introduces a deterministic methodology for segmenting individual grain contributions from complex high-density Laue microdiffraction datasets by leveraging spatial correlations and clustering of peak appearance maps.
Determination of water permeability in stress-free lipid membranes through time-resolved SANS
Time-resolved small-angle neutron scattering with rapid contrast variation enables direct non-invasive measurement of water permeation kinetics and membrane structure under iso-osmotic conditions for lipid membranes.
PolarEyes with enhanced digital imaging, a high-throughput solution for locating and grading crystals
An open-source program for the calculation and visualization of polarization-derived properties of crystalline material is described, alongside the integration of a polarizing image sensor into a home-built high-throughput imaging setup.
more ...
| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
Towards data-driven predictive maintenance for vacuum ion pumps at European XFEL
This paper presents a machine-learning-based approach for early fault detection in vacuum ion pumps at European XFEL by analyzing pressure data to detect fault precursors. The developed method enables predictive maintenance, reducing unplanned downtime and improving operational reliability.
High-resolution monochromator for the 8.41 keV 169Tm nuclear resonance
A high-resolution monochromator for the 8.41 keV 169Tm nuclear resonance is presented enabling nuclear resonant scattering on Tm compounds at PETRA III beamline P01. Hyperfine parameters and phonon densities of states of metallic Tm and Tm2O3 are studied.
Mirror alignment by particle swarm optimization for synchrotron radiation beamlines
A particle swarm optimization–based automated two-mirror alignment method was developed to restore high-flux beams in approximately 5 min, and its 15-month deployment demonstrated its robustness and reliability.
Systematic investigation of the diffraction efficiency of sub-15 nm resolution soft X-ray zone plates via simulation and measurement
This study presents systematic measurements and rigorous coupled-wave analysis of relative and absolute diffraction efficiencies for sub-15 nm soft X-ray Fresnel zone plates. By decoupling intrinsic optical performance from practical beamline transmission losses, this work establishes a highly reliable metrology framework to support the development of next-generation high-resolution synchrotron optics.
Design and performance of a capacitor-based burn-through monitor for high-power X-ray beams at XFEL facilities
We present the results of testing 92 prototypes of a capacitor-based burn-through monitor at the LCLS XCS and XPP endstations. We quantify the beam energy density thresholds required to induce a detectable high-voltage electrical short prior to complete burn-through and demonstrate the reliability of this scalable, low-cost solution for machine and personnel protection at high-power light sources.
Polynomial-shaped electrodes for adaptive X-ray optics
A shaped electrode design for lithium niobate adaptive X-ray mirrors connects actuator degrees of freedom to specific polynomial orders, enabling general shape control and the correction of defocus, coma and fourth-order aberrations with a limited number of inputs.
A femtosecond time-resolved Bragg coherent diffraction imaging experimental setup at PAL-XFEL for nanoscale lattice dynamics studies
The XSS beamline at PAL-XFEL provides a femtosecond time-resolved Bragg coherent X-ray diffraction imaging setup, optimized for tracking transient lattice dynamics and nanoscale strain fields within single crystals during dynamic processes.

New frontiers in the structural analysis of nanomaterials: a deep-learning leap to bridge the gap in crystalline order
We address the challenge of solving ab initio crystal structures from X-ray powder diffraction (XRPD) data acquired from nanomaterials. Our approach employs artificial intelligence to pre-process XRPD profiles with the aim of recovering information lost by lack of crystalline order.
Variable Resolution Maps (VRM) in CCTBX and Phenix: accounting for local resolution in cryoEM
New tools implemented in CCTBX and Phenix allow the calculation of variable-resolution maps through a sum of finite-resolution atomic images expressed as analytic functions of all atomic parameters, along with their associated local resolution.
Lighting up materials with X-rays: advanced X-ray excited optical luminescence probe at BM08-XAFS/XRF beamline SESAME
An advanced X-ray excited optical luminescence experimental probe has been developed and commissioned at the BM08-XAFS/XRF beamline, SESAME. The setup is now available to users for measuring emission spectra and performing hyperspectral mapping of a wide range of optical materials over the 200–950 nm spectral range, under monochromatic X-ray beam and laser (UV–Vis/NIR) excitation.
| IUCrData IUCrData |
4-[(E)-2-(4-{(E)-2-[4-((E)-2-{4-[(E)-2-(4-Cyanophenyl)ethenyl]phenyl}ethenyl)-2,5-bis(octyloxy)phenyl]ethenyl}phenyl)ethenyl]benzonitrile
The complete molecule of the title compound, which was prepared via a Horner olefination, is generated by a crystallographic centre of symmetry. Whereas the terminal cyanostilbene units are almost planar, the central dioctoxybenzene unit is substantially tilted, which limits conjugation. van der Waals forces between the alkyl chains connect the molecules, arranged in layers lying parallel to the ac plane.

menu