forthcoming articles

The following articles are a selection of those recently accepted for publication in IUCr journals.

Journal logoActa Crystallographica Section A
Acta Crystallographica
Section A
FOUNDATIONS AND ADVANCES
Accepted 17 March 2025

Distinguishing isotropic and anisotropic signals for X-ray total scattering using machine learning


Accepted 12 March 2025

A new order parameter model for the structural phase transitions in VO2-based solid solutions


Accepted 24 February 2025

Helical substructures of 4D constructions that determine the structure of α-helices

The structure of the α-helix is determined by a helical substructure of the 4D tube polytope with the symmetry group ±[O×D20]; this substructure has a screw axis 40/11 with the angle of rotation of 99°. This polytope belongs to the family of tube polytopes with the starting groups ±1/2[O×C2n], which determine the screw axes of the α-helices included in superhelices.

Accepted 28 January 2025

Refuting `a new theory for X-ray diffraction' – a reciprocal-space approach

Journal logoActa Crystallographica Section B
Acta Crystallographica
Section B
STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS

Accepted 14 March 2025

The varying temperature- and pressure-induced phase transition pathways in hybrid improper ferroelectric Sr3Sn2O7

The phase transitions in Sr3Sn2O7 are studied crystallographically, illustrating both the hybrid improper ferroelectric mechanism that acts in this material and the varying response of the symmetry-breaking degrees of freedom with pressure and temperature.

Accepted 28 February 2025

Magnetic structure determination of multiple phases in the multiferroic candidate GdCrO3

Journal logoActa Crystallographica Section C
Acta Crystallographica
Section C
STRUCTURAL CHEMISTRY

Accepted 21 March 2025

Crystallographic studies of piperazine derivatives of 5,5-di­methyl­hydan­toin in the search for structural features of α1-adrenoreceptors antagonists

Six 5,5-di­methyl­hy­dan­toin derivatives were investigated towards the search for structural features responsible for affinity for α1-adrenoreceptors. Compounds with higher activity prefer an extended conformation, which leads to larger distances between the end aromatic rings, while for com­pounds with lower affinity, the distances between the end aromatic rings are shorter.

Accepted 19 March 2025

Structure, inter­molecular inter­actions and charge-density distribution of 2-amino-4-meth­oxy-6-methyl­pyrimidine with methyl­sulfamic acid and 4-hy­droxy­benzoic acid: a combined experimental and theoretical study


Accepted 18 March 2025

Crystal structures of two pyrrolidin-1-yl derivatives of cathinone: α-PVP and α-D2PV


Accepted 13 March 2025

High-pressure synthesis of bilayer nickelate Sr3Ni2O5Cl2 with a tetra­gonal crystal structure

A theoretical candidate for a new Ni oxide superconductor, Sr3Ni2O5Cl2, has been synthesized for the first time under high-pressure conditions (10 GPa and 1673 K). While it adopts the tetra­gonal Ruddlesden–Popper phase structure predicted by theoretical calculations, resistance measurements revealed no superconductivity down to 2 K under pressures up to 24 GPa.
Journal logoActa Crystallographica Section D
Acta Crystallographica
Section D
STRUCTURAL BIOLOGY

Accepted 27 March 2025

The crystal structure of an uncharacterized domain of P113 from Plasmodium falciparum

P113 is a membrane-anchored protein in Plasmodium falciparum that stabilizes the RH5 complex, facilitating erythrocyte invasion by interacting with the host receptor basigin. The helical-rich domain of P113 (residues 311–679) was crystallized, revealing a predominantly α-helical structure with two 4-helix bundles and a disordered connecting region.

Accepted 19 March 2025

Structure of the Fab fragment of a humanized 5E5 antibody to a cancer-specific Tn-MUC1 epitope

Journal logoActa Crystallographica Section E
Acta Crystallographica
Section E
CRYSTALLOGRAPHIC COMMUNICATIONS

Accepted 24 March 2025

Synthesis and structure of 4-bromo-2-chloro­phenyl 4′-meth­oxy-[1,1′-biphen­yl]-4-carboxyl­ate featuring short halogen⋯oxygen contacts

The extended structure features short halogen⋯oxygen contacts [Cl⋯O = 2.991 (3), Br⋯O = 3.139 (2) Å], forming mol­ecular sheets lying parallel to (101).
Journal logoActa Crystallographica Section F
Acta Crystallographica
Section F
STRUCTURAL BIOLOGY COMMUNICATIONS

Accepted 27 March 2025

The first report of structural analysis of a nucleic acid using crystals grown in space. Corrigendum


Accepted 16 March 2025

Molecular interactions between piperine and peroxisome proliferator-activated receptor gamma ligand-binding domain revealed using co-crystallization studies

This study reports the co-crystallization of piperine with peroxisome proliferator-activated receptor gamma (PPARγ) ligand-binding domain, providing detailed insights into the piperine binding position and interactions with specific amino acids within the receptor. X-ray crystallographic analysis of the co-crystal structure revealed that piperine binds in the ligand-binding pocket of PPARγ via hydrogen-bonding and hydrophobic interactions, suggesting that it plays a role as a partial agonist or antagonist and thereby holds promise as a natural alternative to synthetic PPARγ modulators.

Accepted 14 March 2025

Structures of Mycobacterium tuberculosis isoprenyl diphosphate synthase Rv2173 in substrate-bound forms

We report the structure of M. tuberculosis isoprenyl diphosphate synthase Rv2173 in three forms, including two with substrate (isoprenyl diphosphate and dimethylallyl diphosphate) occupying the allylic substrate site in different binding poses, with different numbers of metal ions bound. The homodimeric structures possess a canonical all-α-helical trans-isoprenyl diphosphate synthase fold, which supports small but significant differences, notably in the ordering of the C-terminus that closes the active site.

Accepted 19 February 2025

High-throughput protein crystallography to empower natural product-based drug discovery

High-throughput protein crystallography is used at the heart of a pipeline to accelerate the discovery of bioactive natural products by capturing hits directly from unpurified biota samples using protein crystals.
Journal logoJournal of Applied Crystallography Journal of Applied
Crystallography

Accepted 16 March 2025

Structure factor of random hard disk packing in 2D by explicit modeling

Structure factors of randomly packed disks in 2D equivalent to parallel cylinders are given as a function of area fraction. This structure factor can interpret scattering features from densely packed fibrous systems.

Accepted 14 March 2025

Designing a dataset for convolutional neural networks to predict space groups consistent with extinction laws

Using the deep learning method to achieve the space group prediction consistent highly with extinction laws. The trained model presents a much stronger generalization capability than the reported models before.

Accepted 9 March 2025

Strain-induced density fluctuations in linear low-density polyethyl­ene

This study investigated how comonomer species and content affect strain-induced density fluctuations in linear low-density polyethyl­ene. It was found that increased spatial homogeneity before stretching, influenced by the type and amount of comonomer, suppressed the strength of density fluctuation induction during strain.

Accepted 5 March 2025

3DStrainOrientationCalculator: a 3D diffraction data analysis tool for single-crystal substructure information extraction

The program 3DSOC provides a new way of extracting single-crystal substructure information from monochromatic neutron diffractometer data.

Accepted 3 March 2025

Probing Langmuir monolayer self-assembly in condensed and collapsed phases: grazing-incidence X-ray diffraction and X-ray standing waves studies


Accepted 28 February 2025

Linearization routines for the parameter space concept to determine crystal structures without Fourier inversion

The novel linearization routines within the parameter space concept (PSC) provide an alternative approach to determine one-dimensionally projected crystal structures from rather few diffraction intensities of standard Bragg reflections, represented by piecewise analytic hyper-surfaces, without the use of Fourier inversion. By the intersection of linearized isosurface segments of multiple reflections, the PSC accurately pinpoints the atomic coordinates and explores both homometric and quasi-homometric solutions in a single analysis. The developed workflow of the Python-coded program pypsc encompasses data initialization, linearization of amplitudes or intensities, polytope construction and intersection analysis, effectively handling both equal point atom (EPA) and non-EPA cases across diverse isosurface topologies in two- and three-dimensional parameter spaces. Monte Carlo simulations confirm PSC's precision, achieving atomic coordinate resolution in the picometre range.

Accepted 27 February 2025

PolymCrystIndex: a package for automated fiber pattern indexing

This study introduces an innovative software package that automates fiber pattern indexing leveraging the power of genetic algorithms.

Accepted 24 February 2025

Synthesis and quantum crystallographic evaluation of WYLID: YLID's red rival

The synthesis and quantum crystallographic analysis of the chemical bonding within WYLID, 2-(di­methyl-λ4-sulfane­ylidene)-[1,2′-bi­indenyl­idene]-1′,3,3′(2H)-trione, a condensation product of YLID which is the most widely used calibrant for laboratory diffractometers, is presented. An ylid-type description of the S—C bond and a carbonyl-type description of the C—O bonds in WYLID is found in all aspects of the analysis.

Accepted 24 February 2025

Local orthorhombic phase in zirconium oxide nanocrystals: insights from X-ray pair distribution function analysis

Journal logoJournal of Synchrotron Radiation Journal of
Synchrotron Radiation

Accepted 15 March 2025

Machine Learning for Orbit Steering in Presence of Nonlinearities


Accepted 13 March 2025

Development of portable nanofocusing optics for X-ray free-electron laser pulses

A portable and compact nanofocusing system was developed for X-ray free-electron lasers with the ability to generate Zn Kα lasers with the world's highest photon energies on amplified spontaneous emission.

Accepted 6 March 2025

Design of a time-delay-compensated monochromator for the ARPES endstation at S3FEL

The preliminary design of a pulse monochromator is presented for monochromatization and time delay compensation at Shenzhen Superconducting Soft X-ray Free Electron Laser (S3FEL).

Accepted 6 March 2025

High-resolution X-ray scanning with a diffuse Huffman-patterned probe to reduce radiation damage


Accepted 5 March 2025

PvaPy Streaming Framework for Real Time Data Processing


Accepted 4 March 2025

TXM-Pal: a companion software for advanced data processing in spectroscopic X-ray microscopy

We developed advanced software for X-ray spectroscopy imaging, enabling precise and rapid XANES imaging analysis, and demonstrated its effectiveness by mapping the Ni oxidation states in lithium-ion battery cathodes, thereby revealing their heterogeneity.

Accepted 3 March 2025

Current and future perspectives for structural biology at the Grenoble EPN campus: a comprehensive overview

This article provides details on the current status of the experimental techniques available at the ESRF–EBS and ILL research infrastructures. It describes major contributions made by the EMBL, ESRF, ILL and IBS to the structural biology field and includes future prospects at the EPN campus

Accepted 26 February 2025

Enhancing synchrotron radiation micro-CT images using deep learning: an application of Noise2Inverse on bone imaging

The use of Noise2Inverse in low-dose in situ synchrotron micro-computed tomography experiments shows high feasibility and promise for biological tissues such as bone. With appropriate scanning parameters and experimental setup, features in bone such as lacunae volume and shape as well as mineralization can be reasonably preserved while reducing radiation dose by two to three times.

Accepted 25 February 2025

Optical design and commissioning results of a constant-imaging-distance fixed-included-angle grating monochromator at SSRF

A constant-imaging-distance fixed-included-angle grating monochromator has been designed and constructed at the X-ray test beamline at Shanghai Synchrotron Radiation Facility to expand the covered energy range of the beamline.

Accepted 23 February 2025

High-resolution in situ characterization of laser powder bed fusion via transmission X-ray microscopy at X-ray free-electron lasers

Described here is the first implementation of an operando transmission X-ray microscopy to study laser melting at X-ray free-electron lasers. The instrument uses a novel pump–probe scheme to image down to 940 nm spatial resolution with integration times <100 fs and up to 0.48 GHz frame rates to study the rapid dynamics and small-scale features in laser additive manufacturing.

more ...IUCrJ
Accepted 24 March 2025

Damage before destruction? X-ray-induced changes in single-pulse serial femtosecond crystallography

Varied pulse-duration and pulse-intensity SFX data do not show significant signs of radiation damage under typical experimental conditions.

Accepted 23 March 2025

Accurate temperature dependence of structure factors of L-alanine and taurine for Quantum Crystallography

The temperature dependence of accurate structure factors of L-alanine and taurine was measured at the SPring-8 BL02B1 beamline. The quality of the structure factors was evaluated by charge density and quantum crystallographic studies. The effects of small amounts of twinning on the charge density study in taurine were also described.

Accepted 21 March 2025

Structure of ICE VII with Hirshfeld Atom Refinement

Crystal structure of cubo-ice (ice VII) has been established by single-crystal X-ray diffraction using both synchrotron and laboratory data collected at high pressure. X-ray diffraction data in both cases were refined with Hirshfeld Atom Refinement. Various structural models including the ones with `split' positions of atoms were refined.

Accepted 11 March 2025

Additive-driven microwave crystallization of tyramine polymorphs and salts: a quantum crystallography perspective

This study reveals how additives and microwave radiation influence the crystallization of new tyramine polymorphs and their cocrystallization with barbital. The findings provide insights into polymorph stability and offer potential applications in molecular encapsulation and optical materials.

Accepted 5 March 2025

Peptide bonds revisited

High-resolution crystal structures reveal that peptide bonds in α-helices exhibit a slightly more pronounced enol-like character than those in β-strands. This can go as far as peptide oxygen atoms in protein structures being protonated.

Accepted 4 March 2025

Solid-state calculations for iterative refinement in quantum crystallography using the multipole model

This work is the first step for advanced future research to explore the full periodic charge density in the crystalline solid state with the newly developed method based on periodic boundary calculations.

Accepted 24 February 2025

Code dependence of calculated crystalline electron densities. Possible lessons for quantum crystallography

The development of Quantum Crystallography depends on the availability of reliable theoretical electron densities. This work demonstrates a non-negligible code dependence of these densities and warns against their blind use.

Accepted 17 February 2025

The origin of synthons and supramolecular motifs: beyond atoms and functional groups

This study establishes that hydrogen-, halogen- and chalcogen-bonding intermolecular and non-covalent intramolecular interactions are driven by a face-to-face orientation of electrophilic (charge-depleted) and nucleophilic (charge-concentrated) regions, which is the origin of the specific geometries found in synthons and supramolecular motifs.
Journal logoIUCrData
IUCrData

Accepted 27 March 2025

(E)-N-[4-(Di­ethyl­amino)-2-hy­droxy­benzyl­idene]-2,4,6-tri­methyl­benzenaminium nitrate

The crystal structure of a protonated Schiff base, isolated as its nitrate salt, exhibits a supra­molecular chain-like architecture that propagates along the crystallographic b-axis direction and features inter­molecular O—H⋯O and C—H⋯O hydrogen-bonding.


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