forthcoming articles
The following articles are a selection of those recently accepted for publication in IUCr journals.
| Acta Crystallographica Section A Acta Crystallographica Section A FOUNDATIONS AND ADVANCES |
| Acta Crystallographica Section B Acta Crystallographica Section B STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS |
| Acta Crystallographica Section C Acta Crystallographica Section C STRUCTURAL CHEMISTRY |
Tuning helical chirality and physical properties in chiral lactate-based coordination polymers by varying metal centres and auxiliary ligands
By altering the metal centre and auxiliary ligand, two chiral lactate-based coordination polymers exhibit distinct helical chirality expressions and properties.
Synthesis, structural characterization, and electronic structure of monoclinic α-[SeCl3][MoOCl4]
Moisture-sensitive trichloridoselenium tetrachloridooxidomolybdate, α-[SeCl3][MoOCl4], was synthesized from MoOCl4 and Se2Cl2, and structurally characterized by single-crystal X-ray diffraction, revealing a layered ionic solid comprising [SeCl3]+ cations and dimeric [Mo2O2Cl8]2− anions linked through secondary Se⋯Cl interactions, with electronic structure analysis indicating semiconducting behavior.
Water-bridged tetrameric supramolecular synthons in a novel tetrasubstituted imidazole–phenylalanine derivative synthesized via a Debus–Radziszewski reaction
A new imidazole derivative of phenylalanine was synthesized, the crystals displaying dimeric and/or tetrameric structures with unusual water double bridges.
YK-4-250, a synthetic telmisartan–tempol conjugate: crystal structure of a stabilized free radical containing an angiotensin AT1 receptor inhibitor
The first crystal structure of the telmisartan–tempol conjugate YK-4-250 is reported, revealing the intramolecular C–H⋯π interactions that stabilize the nitroxide radical while preserving the angiotensin AT1 receptor antagonist pharmacophore.
Peculiarity of atomic displacements in garnets discovered through a single-crystal X-ray diffraction study of the Na-bearing vanadate garnet series
Garnets where the mean-square displacements of the tetrahedral cations are largest in the direction of adjacent dodecahedral cations were discovered through structure refinements of the Na-bearing vanadate garnet series. This peculiar atomic displacement behaviour occurs when the dodecahedral sites are occupied by different cation species with different valences and largely different sizes.
| Acta Crystallographica Section D Acta Crystallographica Section D STRUCTURAL BIOLOGY |
QwenCryoMarker: a universal post-processing framework for contamination-aware particle cleaning
QwenCryoMarker is a universal post-processing framework that removes contamination-induced false positives from any cryo-EM particle picker. Built on the Qwen Image Edit vision-language model, it generates high-precision masks of carbon, ice, and impurities, then filters raw particle coordinates with negligible loss of true particles. Validated on five CryoPPP datasets with four representative particle pickers, QwenCryoMarker consistently improves precision and F1-score, and outperforms the state-of-the-art contamination segmentation tool by 14.2% in mean IoU. It is plug-and-play, dataset-independent, and ready for integration into mainstream cryo-EM workflows.
Structural basis for T-cell receptor recognition of p53Y220D, a human cancer neoantigen
We determined crystal structures of TCR 4414 A bound to HLA-A2â"presented p53Y220D and of the corresponding unbound wild-type and mutant p53â"HLA-A2 ligands, revealing that the Y220D driver mutation reshapes the peptide and renders a normally cryptic self-epitope visible to T cells. These structures explain how TCR 4414 A achieves high specificity for mutant p53 by minimizing interactions with conserved peptide regions and instead focusing on the central Y220D mutation, providing a structural basis for mutation-specific TCR immunotherapy.
Single-crystal X-ray and in crystallo XANES studies resolve cobalt coordination in cobalamin and rule out radiation-induced ligand loss in human intrinsic factor
Ultra-high-resolution crystallography combined with in-crystallo Co K-edge XANES shows that cobalamin retains octahedral cobalt coordination in both oxidized and reduced states. These results rule out radiation-induced Coâ"CN cleavage as the cause of the missing axial ligand in intrinsic factorâ"bound cobalamin.
Structure and allostery in major facilitator superfamily symport mechanisms
Conformational dynamics in the melibiose/Na+ cotransporter MelB significantly influence the binding of the primary sugar substrate but have minimal effect on the co-substrate Na+. Na+ acts as an allosteric activator, increasing sugar affinity by stabilizing the inner barrier and constraining conformational flexibility.
Towards routine accurate electron-density studies of biological macromolecules
Here, we describe the determination of the highest resolution structure in the PDB at 0.43 Å resolution. Electron-density maps reveal extensive deformation electron density that is completely accounted for by performing transferable aspherical atom refinements using the DiSCaMB library in BUSTER.
Avoiding pitfalls when modelling ligands in macromolecular crystallography
Flawed protein–ligand X-ray structures can misdirect drug discovery based on PDB-deposited models. This review uses publicly available PDB examples to highlight potential pitfalls. from absent ligands to incorrect chemistry. and presents a practical validation approach to improve model reliability.
Room-temperature crystal structure of a metal-dependent W-formate dehydrogenase by serial synchrotron crystallography
We report a room-temperature serial synchrotron X-ray crystallographic structure analysis of Nitratidesulfovibrio vulgaris formate dehydrogenase AB, an enzyme that reduces CO2 to formate.
Influence of heme and pH on the oligomeric states of Brucella melitensis bacterioferritin
The oligomerization of B. melitensis bacterioferritin (BmBfr) was studied using X-ray crystallography, size-exclusion chromatography and thermal shift analysis. These techniques allowed the characterization of both apo and holo BmBfr, highlighting the impact of heme and pH on the oligomerization mechanism.
| Acta Crystallographica Section E Acta Crystallographica Section E CRYSTALLOGRAPHIC COMMUNICATIONS |
Redetermination of the crystal structure of the 3:1 urea–benzene-1,3,5-tricarboxylic acid co-crystal by powder diffraction data
The redetermined structure of 3:1 urea/trimesic acid, 3CO(NH2)2·C6H3(CO2H)3, has monoclinic (P21/c) symmetry. The compound has a hydrogen-bonding network structure of high interest for crystal engineering.
Structure of bis(tetraethylammonium) molybdate dihydrate obtained by the reaction between ammonium molybdate and tetraethylammonium hydroxide
The crystal structure of tetraethylammonium molybdate dihydrate reveals two-dimensional layers of tetrahedral molybdate molecules bridged by water molecules, with each Mo-oxo serving as a hydrogen bond acceptor.
Crystal structure, supramolecular and Hirshfeld surface analysis of piperazine-1,4-diium bis(2,5-dibromobenzoate)
The crystal structure of piperazine-1,4-diium bis(2,5-dibromobenzoate) is reported, with detailed analysis of its intra- and intermolecular hydrogen-bonding interactions, supramolecular architecture, and Hirshfeld surface analysis.
Trigonal crystal structure of a phosphate belonging to the ABW-type zeolite family: RbCoFe(PO4)2
In the title phosphate, all of the cations are located on tetrahedral sites, and the three different tetrahedra are linked by their vertices to form a double layer stacked along the c-axis direction. The plane formed by the rubidium atoms is sandwiched between the double layers.
| Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
Diverse DTPA-chelated lanthanides with relevance for nuclear medicine bound to an engineered lipocalin reveal conserved ligand geometry
Structural and binding studies of the engineered lipocalin CL31d towards the chelate complexes of 11 different lanthanide and main-group metal(III) ions, whose radioisotopes are useful for nuclear medicine, with a functionalized DTPA revealed a surprisingly broad tolerance towards varying ionic radii, thus enabling flexible radionuclide-targeting strategies.
Crystal structure of the NKX2-1 homeodomain bound to a palindromic DNA recognition sequence
The crystal structure of the NKX2-1 homeodomain bound to DNA reveals the arrangement of two homeodomains on a palindromic NK2-recognition sequence and provides insight into disease-associated variants.
| Journal of Applied Crystallography Journal of Applied Crystallography |
PolarEyes with enhanced digital imaging, a high throughput solution for locating and grading crystals
An open-source program for the calculation and visualisation of polarisation-derived properties of crystalline material is described, alongside the integration of a polarising image sensor into a DIY, high-throughput, imaging setup.
Probing local atomic structure in thin films by grazing-incidence total X-ray scattering with a convergent X-ray beam
We performed grazing-incidence total X-ray scattering (GI-TXS) on an indium tin oxide thin film using a convergent incident beam. This approach enables the acquisition of total scattering profiles up to Q = 21 Å−1, demonstrating the feasibility of laboratory instruments for thin film pair distribution function analysis.
Application of electrostatic and multi-layer embedding in Hirshfeld atom refinements: a cost-effective approach for approximating bulk effects in crystalline environments
A new efficient embedding mechanism for molecule-in-a-crystal electron-density calculations during Hirshfeld atom refinement is made available in NoSpherA2 and benchmarked.
The BioSAXS laboratory of the ITACA.SB Research Infrastructure
We present a state-of-the-art X-ray scattering laboratory within the ITACA.SB Research Infrastructure, enabling multi-scale structural characterization of biological specimens and advanced materials through integrated small- and wide-angle X-ray scattering (SAXS/WAXS) techniques. The platform supports simultaneous SAXS/WAXS acquisition, scanning microscopy, ultra-SAXS and size-exclusion chromatography SAXS measurements, and demonstrates high versatility through applications to complex biological systems, fibers, proteins and micelles.
Angle-dependent X-ray absorption correction in small- and wide-angle X-ray scattering: accounting for constrained scattering volume, beam profiles and capillary wall attenuation
We present an improved numerical angle-dependent absorption correction procedure for line-collimated small- and wide-angle X-ray scattering measurements in thin-walled quartz capillaries. The procedure accounts for the constrained illuminated volume, measured primary beam profiles and capillary-wall absorption, enabling physically consistent data reduction and reliable absolute scaling when conventional experimental scalar transmission corrections become unreliable.
Influence of solidification history and particle size on defect evolution in Al2024 alloy additive manufacturing powder
Findings are presented on the impact of particle size and solidification history on defect formation in Al2024 alloy additive manufacturing powder. The results of this investigation suggest a trend of decreasing dislocation density in as-atomized samples as the particle size increases, with larger particles cooling more slowly.
How a high rotational barrier enables packing-controlled stabilization of a conformational quasi-enantiomer
Variable-temperature NMR reveals a surprisingly high rotational barrier of ∼20 kcal mol−1[∼83.7 kJ mol−1] for (1,4-diacetoxy-3-methylnaphth-2-yl)diphenylphosphine oxide, stabilizing distinct conformers. This fourfold increase over theoretical predictions highlights the critical role of solvent-induced stabilization in maintaining conformational integrity in sterically congested systems.
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| Journal of Synchrotron Radiation Journal of Synchrotron Radiation |
A femtosecond time-resolved Bragg coherent diffraction imaging experimental setup at PAL-XFEL for nanoscale lattice dynamics studies
The XSS beamline at PAL-XFEL provides a femtosecond time-resolved Bragg coherent X-ray diffraction imaging setup, optimized for tracking transient lattice dynamics and nanoscale strain fields within single crystals during dynamic processes.
SMAXI: a machine-learning-powered open-source software for multidimensional full-field X-ray image analysis
SMAXI, a fully open-source, GPU-accelerated software platform that integrates state-of-the-art machine learning and large language model techniques into a unified workflow for X-ray image analysis is presented. SMAXI simplifies high-throughput data processing workflows and overcomes manual image analysis bottlenecks.
Shorter X-ray refractive lens design: A Large-Aperture Single-Lens Dual-Focus Kinoform Lens Based on OVAL Curved Surface
This paper presents a novel Kinoform refractive lens and utilizes Beam Propagation Method (BPM) to simulate the focusing performance of the lens. The results demonstrate that this lens not only enhances the gain and reduces the FWHM, but also shortens the lens length.
Single-shot hard X-ray spectrometer with uniform spatial and spectral response
We demonstrate a single-shot hard X-ray spectrometer based on small-angle scattering from glassy carbon that is insensitive to XFEL beam-dependent spatial and spectral variations. Comparison with established X-ray Thomson scattering diagnostics using stochastic correlation X-ray spectroscopy demonstrates full-bandwidth coverage with meV-scale spectral resolution, enabling reliable single-shot spectroscopic measurements.
GoniOwl: convolutional neural network-based sample state detection for collision prevention on synchrotron beamlines
GoniOwl, a lightweight convolutional neural network integrated into the EPICS control system, detects sample-pin presence from beamline camera images with >99% accuracy and fail-safe uncertainty handling, offering a transferable approach to vision-based collision prevention on synchrotron beamlines.
Synchrotron-based multi-scale biological imaging inside biocontainment environments
Orion, the first BSL-4 synchrotron-based research complex, advances pathogen research by integrating cutting-edge, multi-scale imaging to enhance the understanding of infectious diseases and inform global health policies.
An efficient wave-optics framework for partially coherent pink X-ray beam simulation and analysis
This article proposes a new calculation method and framework for simulating a pink X-ray beam, significantly improving computational efficiency. By comparing it with the experimental data from the beamline, the simulation method is consistent with the actual situation.
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A discussion of cryo-EM terminology as the outreach and number of PDB entries expand
Single-particle cryo-EM will soon equal the number of yearly entries in the Protein Data Bank from structures determined by X-ray crystallography. Considering the growing outreach of cryo-EM, it is timely to remind and define typical terms important for understanding the underlying fundamental physical concepts and key basics of single-particle cryo-EM and image processing, which are particularly relevant for the expanding cryo-EM community, including for newcomers and scientists joining from related fields.
Simple and robust aqueous sheet jets in vacuum
A novel vacuum-compatible liquid sheet jet nozzle, utilizing a second gas sheath, successfully generates stable aqueous films under 100 nm in thickness, overcoming previous freezing limitations in vacuum environments. This development simplifies operations and is demonstrated to be viable for high-repetition-rate X-ray scattering measurements at X-ray free-electron laser sources, broadening the applications for studying matter in solution.
Considerations for FAIR data catalogs from DAPHNE4NFDI
Metadata catalogs are essential for implementing FAIR data principles in photon and neutron (PaN) science, enabling experimental data to become findable, accessible and reusable. This work provides an analysis of current catalog systems in the PaN field and offers practical recommendations to advance interoperability and build a federated FAIR-compliant data infrastructure.
Magnetic order in Tsai-type icosahedral quasicrystals and periodic approximants
This review summarizes recent experimental and theoretical advances in the magnetism of quasicrystals and their approximant crystals, and formulates three complementary and hierarchical design principles – valence electron concentration, crystal electric field-induced anisotropy and structural control of magnetic frustration – as primary tools for systematically tuning the magnetic ground states in these compounds.
Post-acquisition super resolution for cryo-electron microscopy
Post-acquisition super resolution (PASR) is a pre-processing step which can be utilized to exceed the resolution limit of already-acquired data if the limit is reached. It is designed to be as minimally invasive to all general single particle workflows as possible, allowing users to choose which suite they prefer.
| IUCrData IUCrData |
N,N′-Bis(2,6-diisopropylphenyl)-N-hydroxyformamidine–N,N′-bis(2,6-diisopropylphenyl)-N-oxidoformamidinium (1/1)
The title compound is a symmetrical diarylformamidine derivative bearing diisopropyl substituents. The compound contains two independent molecules in the asymmetric unit, one being the zwitterionic and the other the neutral forms of the diarylformamidine derivative. The two molecules are connected by O—H⋯O and N—H⋯N hydrogen-bonding interactions within a cyclic assembly.
Ethyl α-D-sorboside monohydrate
The title compound, ethyl α-D-sorboside monohydrate, was prepared by Fischer glycosylation of D-sorbose with ethanol. The crystal structure contains one water molecule per sorboside molecule, and the components are linked by O—H⋯O hydrogen bonds.
2-Deoxy-D-galactitol
The title compound, 2-deoxy-D-galactitol, was prepared by sodium borohydride reduction of 2-deoxy-D-galactose and crystallized from water. Its crystal structure contains two crystallographically independent molecules in the asymmetric unit, which are linked by O—H⋯O hydrogen bonds into a three-dimensional network.

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