checkCIF procedure
PLAT706
PLAT706 Type_1 Test for consistency of H-bond H..A distances and coordinates in CIF
Hydrogen-Bond H..A listed in the CIF is checked. Alerts are set at 1,2 and 3 Sigma deviation levels. This ALERT is generally related to incorrect symmetry codes. The symmetry number s in the symmetry code s_pqr should correspond to the expression for s in the CIF. Those expressions can be different for different software packages. E.g. pasting H-bond table data generated with PLATON into a CIF generated with SHELXL may raise this ALERT. Manual correction of the symmetry code should be trivial.