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Structural characterization and comparative analysis of polymorphic forms of psilocin (4-hy­dr­oxy-N,N-di­methyl­tryptamine)

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aPurdue University, Department of Chemistry, 560 Oval Drive, West Lafayette, IN 47907-2084, USA, bSolsta Consulting LLC, 1200 Fawn Ridge Drive, West Lafayette, IN 47906, USA, and cCanna-Chemistries LLC, 400 Main Street, Vincennes IN 47906, USA
*Correspondence e-mail: ns@canna-chemistries.com

Edited by W. T. A. Harrison, University of Aberdeen, United Kingdom (Received 3 May 2024; accepted 7 May 2024; online 14 May 2024)

The title compound, C12H16N2O, is a hy­droxy-substituted mono­amine alkaloid, and the primary metabolite of the naturally occurring psychedelic compound psilocybin. Crystalline forms of psilocin are known, but their characterization by single-crystal structure analysis is limited. Herein, two anhydrous polymorphic forms (I and II) of psilocin are described. The crystal structure of polymorphic Form I, in space group P21/c, was first reported in 1974. Along with the redeterm­ination to modern standards and unambiguous location of the acidic H atom and variable-temperature single-crystal unit-cell determinations for Form I, the Form II polymorph of the title compound, which crystallizes in the monoclinic space group P21/n, is described for the first time. The psilocin mol­ecules are present in both forms in their phenol–amine tautomeric forms (not resolved in the 1974 report). The mol­ecules in Forms I and II, however, feature different conformations of their N,N-dimethyl ethyl­ene substituent, with the N—C—C—C link in Form I being trans and in Form II being gauche, allowing the latter to bend back to the hydroxyl group of the same mol­ecule, leading to the formation of a strong intra­molecular O—H⋯N hydrogen bond between the hydroxyl moiety and ethyl­amino-nitro­gen group. In the extended structure of Form II, the mol­ecules form one-dimensional strands through N—H⋯O hydrogen bonds from the indole group to the oxygen atom of the hydroxyl moiety of an adjacent mol­ecule. Form II exhibits whole-mol­ecule disorder due to a pseudo-mirror operation, with an occupancy ratio of 0.689 (5):0.311 (5) for the two components. In contrast, Form I does not feature intra­molecular hydrogen bonds but forms a layered structure through inter­molecular N—H⋯O and O—H⋯N hydrogen bonds.

1. Chemical context

Psychedelic-based therapies have garnered significant inter­est due to their potential for treating addiction, anxiety, depression, and post-traumatic stress disorder (PTSD) (Nichols, 2016[Nichols, D. E. (2016). Pharmacol. Rev. 68, 264-355.]). Currently, psilocybin {3-[2-(di­methyl­amino)­eth­yl]-1H-indol-4-yl di­hydrogen phosphate, C12H17N2O4P} is the most widely studied psychedelic compound for mental health conditions (Mitchell et al., 2024[Mitchell, J. M. & Anderson, B. T. (2024). Neuropsychopharmacol. 49, 96-103.]). Upon entering the body, the prodrug psilocybin is de­phospho­rylated by the enzyme alkaline phosphatase, resulting in the active metabolite psilocin (4-hy­droxy-N,N-di­methyl­tryptamine, C12H16N2O). Psilocin is classified as a high-affinity agonist at serotonin 5-HT2A receptors, which are responsible for producing the psychoactive effects within the body.

Crystalline materials derive their fundamental properties from the arrangement of individual mol­ecules within the solid. Consequently, polymorphic compounds often exhibit distinct physicochemical properties such as solubility, dissolution, stability, and melting point (Bernstein, 2002[Bernstein, J. (2002). Polymorphism in Molecular Crystals. Oxford University Press.]). Single-crystal structure analysis facilitates inspection of the mol­ecular connectivity and packing, which can lead to a more precise understanding of their structure–property relationships.

Psilocin was first chemically characterized by Albert Hofmann (Hofmann et al., 1958[Hofmann, A., Heim, R., Brack, A. & Kobel, H. (1958). Experientia, 14, 107-109.]), while a single-crystal structure of the title compound was later solved by Petcher et al. (1974[Petcher, T. J. & Weber, H. P. (1974). J. Chem. Soc. Perkin ITrans. 2, pp. 946-948.]) at room temperature in the space group P21/c. The quality and resolution of the 1974 structure are, by modern standards, relatively poor. For example, the position of the acidic hydrogen atom was not resolved, leading to a questionable inter­pretation of the data, such as the possibility that the compound exists as a mixture of neutral mol­ecules and zwitterions. To get a better understanding of the structure of Form I, data were recollected at both room temperature and 150 K. Variable-temperature unit-cell determinations were also conducted, repeated every 20 K, starting from the complete dataset acquired at 150 K up to room temperature. This paper also describes for the first time the details of the crystal structure of a second polymorph (Form II) of psilocin, collected at room temperature in the space group P21/n (preliminary data reported in a patent; Schultheiss et al., 2022[Schultheiss, N., Houston, T. L. & Parent, S. D. (2022). US Patent 2022/0371994, A1.]).

[Scheme 1]

2. Structural commentary

Structural data for two polymorphic forms of psilocin, Forms I and II, were collected and analyzed. The two forms were obtained from different solvent mixtures: chloro­form/heptane for Form I and chloro­form for Form II. For Form II, the solution was acidified using HCl in attempts to form the psilocin hydro­chloride salt. A single crystal from the sample was identified and isolated; however, the bulk material was not suitable for additional analytical characterization. The exact mechanism that induces the formation of the different polymorphs remains unclear and requires additional exploration.

The two forms crystallize in different settings of the same centrosymmetric monoclinic space group, P21/c and P21/n for Forms I and II, respectively. Each form has one crystallographically independent mol­ecule (Z* = 1, Z = 4) and similar mol­ecular volume and density. Form I is more densely packed, with ρ = 1.202 rather than 1.190 g cm−3 for Form II (at room temperature). Although this difference could be attributed to the distinct mol­ecular conformations and packing between the forms (see below), we do not consider this difference to be significant.

Displacement ellipsoid plots of the mol­ecules for Form I and II are shown in Fig. 1[link]. The mol­ecules in both forms share the almost planar 4-hy­droxy indole moiety. Bond lengths and angles in these moieties are unexceptional and as expected. The primary differences between the two forms lie in the mol­ecular conformations of the psilocin mol­ecules and the presence of disorder for Form II. Form I, previously described by Petcher and coworkers in 1974, exists in the crystal in its phenol–amine form, with the di­methyl­amine ethyl­ene pendant grouping rotated away from the phenol oxygen atom and hydrogen-bonded to the phenol hydroxyl group of a neighboring mol­ecule, forming centrosymmetric dimers (see Supra­molecular features section). In contrast, Form II establishes an intra­molecular O—H⋯N hydrogen bond, with the phenol O—H group bonded to the dimethyl amine of the same mol­ecule. Thus, the mol­ecules in the two forms differ by the torsion angles of the di­methyl­amine chain. For Form I, the C6—C1—C2—N2 unit is trans with a torsion angle of −172.27 (11)° [–170.10 (8)° at 150 K]. The same unit in Form II adopts a gauche conformation, with a torsion angle of −84.6 (6)° [83.2 (13)° for the minor disorder component] for the equivalent atoms.

[Figure 1]
Figure 1
The mol­ecular structures of psilocin (Form I left, Form II right) drawn at the 50% probability level. The major components of disorder are shown.

Another aspect that differentiates the two polymorphs is the presence of whole-mol­ecule disorder in Form II. The entire mol­ecule is disordered across its average plane, induced by an inversion at the two ethyl­ene carbon atoms (C5 and C6). This is reflected in the already mentioned C6—C1—C2—N2 torsion angles, which are opposite in sign. The occupancy ratio refined to 0.689 (5):0.311 (5) (see the Refinement section for details). Consequently, the largest deviation between atom positions occurs at these two atoms (C1 and C2), but significant deviations are also observed for the disordered 4-hy­droxy indole and di­methyl­amine fragments [0.804 (8) Å for the O1⋯O1B distance, for example].

The intra­molecular O—H⋯N hydrogen bond is unaffected by the disorder; the acidic phenol proton is situated on the pseudo-mirror plane between the two moieties, maintaining the same position for both the major and minor moieties. As is typical for a strong hydrogen bond such as phenol-to-amine, the O—H distance is elongated beyond the standard hydroxyl O—H distance (0.82–0.84 Å for X-ray based data): see Tables 1[link]–3[link][link] for all metric parameters. The refined O—H distances are 1.03 (2) Å for Form I [1.038 (19) Å at 150 K], and 1.08 (5) and 1.12 (5) Å for the major and minor moieties of Form II, respectively. These O—H bond lengths are slightly longer than those reported for similar compounds in the Cambridge Structural Database (CSD, 2023 version 5.45, including November 2023 update; Groom et al., 2016[Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171-179.]): for 39 entries from 28 compounds featuring a phenol-to-di­methyl­amine hydrogen bond (excluding compounds where the O—H distance was constrained to a default value such as 0.82, 0.84 or 0.85 Å), an average O—H distance of 0.934 Å was reported. However, six of the 39 entries also feature O—H bond lengths greater than 1 Å, thus placing psilocin at the upper end of the observed range, although these values are not unprecedented. The H⋯N and O⋯N distances for Form I are 1.61 (2) and 2.6242 (14) Å [1.590 (19) and 2.6175 (10) Å at 150 K], and for Form II, they are 1.54 (5) and 2.584 (8) Å [1.43 (5) and 2.52 (2) Å for the minor moiety]. The average values from the CSD (for the same selection as for O—H distances) are 1.796 Å for H⋯N and 2.665 Å for the donor–acceptor distance, both significantly longer than the values found here, indicating that the elongated O—H distances in psilocin result from a very strong O—H⋯N hydrogen bond compared to other compounds with phenol to di­methyl­amine hydrogen bonds. This aligns with 4-hy­droxy indole being more acidic than phenol itself or alkyl-substituted phenols, which constitute the majority of the 28 compounds from the CSD. However, the potential inaccuracy of refined H atom positions from X-ray data, especially for older or lower quality/resolution data, should be considered when comparing the data observed here with those from the CSD.

Table 1
Hydrogen-bond geometry (Å, °) for Form I at 150 K[link]

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1O⋯N2i 1.038 (19) 1.590 (19) 2.6175 (10) 169.5 (16)
N1—H1N⋯O1ii 0.913 (16) 1.995 (17) 2.8867 (11) 165.0 (15)
Symmetry codes: (i) [-x+1, -y+1, -z+1]; (ii) [x, -y+{\script{1\over 2}}, z-{\script{1\over 2}}].

Table 2
Hydrogen-bond geometry (Å, °) for Form I at 300 K[link]

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1O⋯N2i 1.03 (2) 1.61 (2) 2.6242 (14) 166.6 (18)
N1—H1N⋯O1ii 0.92 (2) 1.99 (2) 2.8944 (14) 167.9 (18)
Symmetry codes: (i) [-x+1, -y+1, -z+1]; (ii) [x, -y+{\script{1\over 2}}, z-{\script{1\over 2}}].

Table 3
Hydrogen-bond geometry (Å, °) for Form II at 293 K[link]

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯O1i 0.86 1.99 2.823 (8) 164
N1B—H1NB⋯O1Bi 0.86 2.14 2.984 (18) 169
O1—H1⋯N2 1.08 (5) 1.54 (5) 2.584 (8) 161 (4)
O1B—H1⋯N2B 1.12 (5) 1.43 (5) 2.52 (2) 162 (4)
Symmetry code: (i) [x-{\script{1\over 2}}, -y+{\script{3\over 2}}, z-{\script{1\over 2}}].

In their previous description of the structure of Form I, Petcher et al. (1974[Petcher, T. J. & Weber, H. P. (1974). J. Chem. Soc. Perkin ITrans. 2, pp. 946-948.]) were unable to locate the acidic hydrogen atom and speculated that the compound likely exists as a mixture of neutral mol­ecules and zwitterions; that is, the phenol H atom might occasionally be transferred to the amine, forming a phenolate–ammonium proton-transfer complex. Proton transfer from a (relatively) strongly acidic phenol to an amine would not be unprecedented. However, observations of this in the solid state are, with one exception, limited to very acidic di- and tri­nitro-substituted phenolates (25 entries in the CSD, excluding metal-coordinated phenolates). The one exception is a 4-bromo substituted phenolate (Ghosh et al., 2022[Ghosh, R., Debnath, S., Bhattacharya, A., Pradhan, D. & Chatterjee, P. B. (2022). J. Inorg. Biochem. 233, 111845.]). In this case, the proton transfer to the dimethyl amine is facilitated by a second N—H group (from a hydrazinyl fragment) also hydrogen-bonded to the phenolate, thus stabilizing the anionic charge. No cases of a partial proton transfer, with an equilibrium between O—H⋯N and N—H+⋯O states, have been reported for the solid state. With the new data now on hand, this can unequivocally be excluded as an option for psilocin. The electron densities of the acidic protons are well resolved for both polymorphic forms, and they are clearly associated with the phenol oxygen atom. The O—H bond lengths are elongated as expected for a strong hydrogen bond (as described above), but no split electron density or a full transfer of the proton is observed in either Form I (RT and 150 K) or in Form II.

To unequivocally exclude the possibility of partial proton transfer for psilocin in the solid state, low-temperature data were also collected for the better-defined, non-disordered polymorph, Form I. The refinement against the data collected at 150 K showed no indication of partial or full proton transfer, with well-defined and localized electron densities for the acidic hydrogen atoms. Variable-temperature unit-cell data were collected as well, showing a steady change in all unit-cell parameters between 300 and 150 K, with no indications of the presence of a discontinuity or phase change, see Fig. 2[link] and supporting information. The a- and c-axes exhibit a steady decline on cooling, while the b-axis marginally increases. The largest relative changes are observed for the a-axis and the unit-cell volume, which shrink by ∼2 and 2.5%, respectively, upon cooling. The β angle increases from 90.8366 (24)° at 300 K to 92.6122 (19)° at 150 K (see supporting information). Overall, no unusual behavior is observed in the studied temperature range.

[Figure 2]
Figure 2
Variable-temperature unit-cell data of Form I from 150–300 K expressed as relative change compared to the 150 K values.

The closeness of the β angle to 90° allows for twinning by pseudo-merohedry. During the screening of crystals for data collection, twinning was indeed observed for some crystals (TWIN transformation matrix −1 0 0 / 0 −1 0 / 0 0 1, corresponding to twofold rotation around the c-axis). Pseudo-merohedry led to twinning by non-merohedry upon cooling. All data reported here were collected from a crystal that was not twinned.

3. Supra­molecular features

The difference between Forms I and II of psilocin are based on mol­ecular conformations that lead to either intra- or inter­molecular O—H⋯N bonds. Consequently, inter­actions between neighboring mol­ecules also differ significantly between the two polymorphs. In Form I, all hydrogen-bonding inter­actions are inter­molecular. Two types of classical hydrogen bonds involving acidic protons are observed: phenol OH to amine, and indole N—H to phenol. The O—H⋯N hydrogen bonds connect pairs of mol­ecules into hydrogen-bonded dimers, see Fig. 3[link]: mol­ecules are inversion-related [symmetry operator: (i) 1 − x, 1 − y, 1 − z]. The N—H⋯O hydrogen bonds operate perpendicular to the plane of the inversion dimers [symmetry operator: (ii) x, [{1\over 2}] − y, [{1\over 2}] + z], thus connecting the mol­ecules to other dimers and creating infinite layers that extend perpendicular to the a-axis direction. Additional weak inter­actions enhance adhesion within the layers, such as a weak C—H⋯O inter­action originating from methyl­ene C atom C1, supporting the inversion dimer, and a C—H⋯π inter­action of a pyrrole H atom to a neighboring phenyl ring [C5—H5 to C7iv, symmetry operator: (iv) 1 − x, −[{1\over 2}] + y, [{1\over 2}] − z]. Perpendicular to the layers, along [100], no hydrogen bonds are realized, and no other directional inter­actions such as C—H⋯O, C—H⋯N, C—H⋯π, or π-stacking inter­actions are present, thus creating a distinctly two-dimensional layered packing arrangement, see Fig. 4[link].

[Figure 3]
Figure 3
Inter­molecular N—H⋯O hydrogen bonding between mol­ecules of Form I.
[Figure 4]
Figure 4
Inter­molecular N—H⋯O and O—H⋯N hydrogen bonding between mol­ecules of Form I resulting in two-dimensional layers.

In Form II, the O—H⋯N hydrogen bond is intra­molecular, as described above. An inter­molecular indole N—H to phenol O bond is also present, as in Form I. This inter­action connects mol­ecules along the ac-diagonal (the [101] direction) into infinite chains. Parallel chains with opposite direction (inversion-related to the original chain) extend in parallel, thus creating an infinite array of N—H⋯O connected chains, see Fig. 5[link]. Minor weak inter­actions connect neighboring chains. For the major disordered moiety, the most prominent inter­action is a C—H⋯π inter­action of a methyl group to C6 of a neighboring pyrrole ring (at [{3\over 2}] − x, −[{1\over 2}] + y, [{1\over 2}] − z). For the minor moiety, a number of shorter-than-usual contacts involve close contacts between C atoms that are unlikely to be attractive inter­actions, like a 3.259 Å contact between methyl C atoms C3B and C3Bv [symmetry operator: (v) 2 − x, 1 − y, 1 − z]. The most unfavorable inter­actions are present only between neighboring mol­ecules of minor moieties, providing an explanation for why less than 50% of mol­ecules are in the minor moiety orientation, as more than 50% occupancy would invariably lead to close and unfavorable contacts. The actual approximate 2:1 occupancy ratio [refined: 0.689 (5) to 0.311 (5)] avoids those close contacts.

[Figure 5]
Figure 5
Hydrogen bonding in Form II with infinite chains along [101]. Minor moieties of the whole-mol­ecule disorder are shown for one strand in red. Inter­molecular N—H⋯O hydrogen bonds displayed in turquoise.

4. Database survey

A search of the CSD revealed one entry of 4-hy­droxy-N,N-di­methyl­tryptamine (psilocin) and one entry of a structurally very similar mol­ecule, 5-hy­droxy-N,N-di­methyl­tryptamine (bufotenine). The Form I (P21/c) polymorph of 4-hy­droxy-N,N-di­methyl­tryptamine, with data collected at room temperature, was reported in 1974 (CSD refcode PSILIN; Petcher et al., 1974[Petcher, T. J. & Weber, H. P. (1974). J. Chem. Soc. Perkin ITrans. 2, pp. 946-948.]). The crystal structure of 5-hy­droxy-N,N-di­methyl­tryptamine, also collected at room temperature, was reported in 1972 (CSD refcode BUFTEN; Falkenberg 1972[Falkenberg, G. (1972). Acta Cryst. B28, 3219-3228.]). In this case, the mol­ecule possesses two hydrogen-bond donors/acceptors; however, moving the hydroxyl group from the 4- to the 5-position results in one-dimensional strands formed through a series of O—H⋯N hydrogen bonds (O⋯N = 2.719 Å) from the hydroxyl group to the ethyl­amino nitro­gen atom. The indole hydrogen-bond donor and hydroxyl oxygen hydrogen-bond acceptor do not participate significantly in the overall structure. A series of results featuring the 4-hy­droxy-N,N-di­alkyl­tryptamine structural backbone were identified. In each case, when the tryptamine mol­ecule reacts with iodo­methane (MeI), the ethyl­amino group is alkyl­ated, resulting in the formation of iodide salts (CSD refcodes EDOYIJ, EDOYUV, EDOZIK, XUXFAA; Glatfelter et al., 2022[Glatfelter, G. C., Pham, D. N. K., Walther, D., Golen, J. A., Chadeayne, A. R., Baumann, M. H. & Manke, D. R. (2022). ACS Omega, 7, 24888-24894.]; Chadeayne et al., 2020b[Chadeayne, A. R., Pham, D. N. K., Reid, B. G., Golen, J. A. & Manke, D. R. (2020b). ACS Omega, 5, 16940-16943.]). Similarly, when 4-hy­droxy-N,N-di­alkyl­tryptamine reacts with fumaric acid, the ethyl­amino group protonates, resulting in fumarate salts (CSD refcodes RONSUL, TUFQAP, WUCGAF; Chadeayne et al., 2019a[Chadeayne, A. R., Pham, D. N. K., Golen, J. A. & Manke, D. R. (2019a). Acta Cryst. E75, 1316-1320.],b[Chadeayne, A. R., Pham, D. N. K., Golen, J. A. & Manke, D. R. (2019b). IUCrData, 4, x191469.], 2020a[Chadeayne, A. R., Pham, D. N. K., Golen, J. A. & Manke, D. R. (2020a). Acta Cryst. E76, 514-517.]).

5. Synthesis and crystallization

Crystallization of Form I: 44.6 mg of psilocin (Cayman Chemical) was dissolved in a 20-ml solvent mixture of chloro­form (Supelco) and heptane (Sigma-Aldrich) in a 1:4 volume-to-volume ratio. The clear solution obtained was left to evaporate at ambient conditions until dry, resulting in the formation of rosettes of crystalline plates.

Crystallization of Form II: a suspension of 129.4 mg of psilocin (Cayman Chemical) in 8 ml of chloro­form (Macron Chemicals) was briefly sonicated in the presence of activated charcoal. After sonication, the mixture was filtered through a 0.2 µm nylon filter to remove particulates. The resulting clear solution was then acidified by adding 52 ml of 37% HCl (Sigma-Aldrich) over dry ice. The mixture was left to stand in the freezer for one day to facilitate phase separation. Subsequently, the upper layer was deca­nted from the biphasic mixture. The supernatant was partially evaporated under a stream of dry nitro­gen at room temperature until lamellar plates began to form.

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4[link]. For both Forms I and II, the carbon-bound hydrogen atoms were refined isotropically at calculated positions using a riding model. The methyl H atoms were allowed to rotate but not to tip to best fit the experimental electron density. The positions and displacement parameters of acidic H atoms (O—H and N—H) were freely refined. The displacement parameter of the acidic phenol H atom of Form II was freely refined. Uiso values were constrained to 1.5 times the Ueq of their pivot atoms for the other acidic H atoms and methyl groups and 1.2 times for all other hydrogen atoms.

Table 4
Experimental details

  Form I at 150 K Form I at 300 K Form II at 293 K
Crystal data
Chemical formula C12H16N2O C12H16N2O C12H16N2O
Mr 204.27 204.27 204.27
Crystal system, space group Monoclinic, P21/c Monoclinic, P21/c Monoclinic, P21/n
Temperature (K) 150 300 293
a, b, c (Å) 10.4041 (4), 8.5286 (3), 12.4087 (4) 10.6228 (5), 8.4984 (4), 12.5073 (5) 9.5331 (7), 8.9358 (3), 14.0279 (7)
β (°) 92.5663 (19) 90.807 (2) 107.490 (7)
V3) 1099.95 (7) 1129.01 (9) 1139.73 (11)
Z 4 4 4
Radiation type Mo Kα Mo Kα Cu Kα
μ (mm−1) 0.08 0.08 0.61
Crystal size (mm) 0.43 × 0.29 × 0.06 0.43 × 0.29 × 0.06 0.37 × 0.16 × 0.04
 
Data collection
Diffractometer Bruker AXS D8 Quest Bruker AXS D8 Quest SuperNova, Single source at offset, Pilatus 200/300K
Absorption correction Multi-scan (SADABS ; Krause et al., 2015[Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3-10.]) Multi-scan (SADABS; Krause et al., 2015[Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3-10.]) Multi-scan (CrysAlis PRO; Rigaku OD, 2015[Rigaku OD (2015). CrysAlis PRO Rigaku Corporation, The Woodlands, Texas, USA.])
Tmin, Tmax 0.663, 0.747 0.663, 0.747 0.675, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 33575, 4199, 3116 34680, 4323, 2421 4929, 2329, 1754
Rint 0.051 0.066 0.019
(sin θ/λ)max−1) 0.770 0.771 0.634
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.046, 0.138, 1.05 0.052, 0.172, 1.03 0.065, 0.221, 1.13
No. of reflections 4199 4323 2329
No. of parameters 146 146 280
No. of restraints 0 0 532
H-atom treatment H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.35, −0.24 0.21, −0.19 0.18, −0.16
Computer programs: CrysAlis PRO (Rigaku OD, 2015[Rigaku OD (2015). CrysAlis PRO Rigaku Corporation, The Woodlands, Texas, USA.]), APEX4 (Bruker, 2022[Bruker (2022). APEX4. Bruker AXS Inc., Madison, Wisconsin, USA.]), SAINT (Bruker, 2020[Bruker (2020). SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]), SHELXT (Sheldrick, 2015a[Sheldrick, G. M. (2015a). Acta Cryst. A71, 3-8.]), SHELXL2019/2 (Sheldrick, 2015b[Sheldrick, G. M. (2015b). Acta Cryst. C71, 3-8.]), ShelXle (Hübschle et al., 2011[Hübschle, C. B., Sheldrick, G. M. & Dittrich, B. (2011). J. Appl. Cryst. 44, 1281-1284.]), Mercury (Macrae et al., 2020[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]) and publCIF (Westrip, 2013[Macrae, C. F., Sovago, I., Cottrell, S. J., Galek, P. T. A., McCabe, P., Pidcock, E., Platings, M., Shields, G. P., Stevens, J. S., Towler, M. & Wood, P. A. (2020). J. Appl. Cryst. 53, 226-235.]).

For Form II, disorder was observed and refined. A rotation of the ethyl­ene bridge connecting the dimethyl amino group to the indole ring system induces whole-mol­ecule disorder. The two disordered moieties were restrained to have similar geometries [SAME command in SHELXL (Sheldrick, 2015b[Sheldrick, G. M. (2015b). Acta Cryst. C71, 3-8.])]. The indene fragment of the minor moiety, including the directly adjacent C and O atoms, was restrained to be close to planar (FLAT command). The acidic phenol H atom was excluded from the disorder, and its position and displacement parameter were freely refined. The Uij components of ADPs for disordered atoms closer to each other than 2.0 Å were restrained to be similar. Subject to these conditions, the occupancy ratio refined to 0.689 (5) to 0.311 (5).

For the variable temperature unit cell measurements, a colorless, plate-shaped crystal of Form I (the same as used for the full data collections) was mounted on a Mitegen micromesh mount in a random orientation. Data were collected on a Bruker AXS D8 Quest three-circle diffractometer with a fine-focus sealed tube X-ray source, using a Triumph curved graphite crystal as monochromator and a PhotonII charge-integrating pixel array (CPAD) detector. The diffractometer used Mo Kα radiation (λ = 0.71073Å). The crystal was initially shock-cooled to 150 K, at which temperature a full dataset was collected. The temperature was then increased at a rate of 6° per minute to the next target temperature. After a waiting period of 15 minutes for temperature equilibration, a 180° φ scan (`Fast Scan') was collected (5 cm detector-to-crystal distance, 2θ = 0°, shutterless continuous mode, 5 seconds exposure time per read out every 1°). The last 120 of the 180 frames of each run were integrated using SAINT V8.40B (Bruker, 2020[Bruker (2020). SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]). The results (unit-cell parameters, orientation matrices, and correction parameters) were reimported, and the integration was repeated once. The procedure was repeated every 20 K, and the unit-cell data were obtained from the integration files (p4p files).

Supporting information


Computing details top

3-[2-(Dimethylamino)ethyl]-1H-indol-4-ol (Form_II_293K) top
Crystal data top
C12H16N2OF(000) = 440
Mr = 204.27Dx = 1.190 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 9.5331 (7) ÅCell parameters from 2141 reflections
b = 8.9358 (3) Åθ = 4.9–77.1°
c = 14.0279 (7) ŵ = 0.61 mm1
β = 107.490 (7)°T = 293 K
V = 1139.73 (11) Å3Plate, colourless
Z = 40.37 × 0.16 × 0.04 mm
Data collection top
SuperNova, Single source at offset, Pilatus 200/300K
diffractometer
1754 reflections with I > 2σ(I)
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray SourceRint = 0.019
ω scansθmax = 78.0°, θmin = 5.0°
Absorption correction: multi-scan
(CrysAlisPro; Rigaku OD, 2015)
h = 118
Tmin = 0.675, Tmax = 1.000k = 1111
4929 measured reflectionsl = 1717
2329 independent reflections
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: mixed
wR(F2) = 0.221H atoms treated by a mixture of independent and constrained refinement
S = 1.13 w = 1/[σ2(Fo2) + (0.1062P)2 + 0.3139P]
where P = (Fo2 + 2Fc2)/3
2329 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.18 e Å3
532 restraintsΔρmin = 0.16 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Rotation of the ethylene bridge connecting the dimethyl amino group induces whole molecule disorder. The two disordered moieties were restrained to have similar geometries. The indene fragment of the minor moiety including the directly adjacent C and O atoms was restrained to be close to planar. The acidic phenol H atom was excluded from the disorder and its position and thermal parameter were freely refined. Uij components of ADPs for disordered atoms closer to each other than 2.0 Angstrom were restrained to be similar. Subject to these conditions the occupancy ratio refined to 0.689 (5) to 0.311 (5).

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
H10.629 (5)0.548 (5)0.379 (3)0.120 (13)*
C10.6049 (6)0.4321 (5)0.1961 (3)0.0786 (12)0.689 (5)
H1A0.7019410.4770620.2183440.094*0.689 (5)
H1B0.5988390.3745800.1363260.094*0.689 (5)
C20.5891 (7)0.3248 (5)0.2772 (3)0.0793 (11)0.689 (5)
H2A0.4853730.3091390.2687000.095*0.689 (5)
H2B0.6315330.2289590.2687220.095*0.689 (5)
N20.6602 (6)0.3790 (7)0.3790 (4)0.0700 (13)0.689 (5)
C30.8215 (7)0.3657 (8)0.4111 (6)0.0991 (18)0.689 (5)
H3A0.8484900.2622280.4106690.149*0.689 (5)
H3B0.8606800.4051600.4774770.149*0.689 (5)
H3C0.8605350.4209370.3661470.149*0.689 (5)
C40.6000 (8)0.3008 (7)0.4497 (5)0.0880 (16)0.689 (5)
H4A0.4967210.3214720.4337270.132*0.689 (5)
H4B0.6492200.3345740.5163440.132*0.689 (5)
H4C0.6146680.1950020.4453890.132*0.689 (5)
N10.3190 (10)0.6949 (9)0.0677 (6)0.0731 (15)0.689 (5)
H1N0.2537270.7244720.0141980.110*0.689 (5)
C50.3974 (7)0.5670 (8)0.0772 (5)0.0692 (15)0.689 (5)
H50.3871320.4966680.0266960.083*0.689 (5)
C60.4918 (6)0.5555 (6)0.1692 (4)0.0646 (11)0.689 (5)
C70.4692 (9)0.6852 (8)0.2248 (5)0.0557 (14)0.689 (5)
C80.5353 (6)0.7405 (7)0.3216 (4)0.0573 (12)0.689 (5)
C90.4903 (8)0.8781 (8)0.3460 (6)0.0651 (16)0.689 (5)
H90.5334830.9181160.4092630.078*0.689 (5)
C100.3792 (13)0.9580 (11)0.2755 (6)0.0687 (18)0.689 (5)
H100.3468231.0479460.2948410.082*0.689 (5)
C110.3173 (13)0.9095 (11)0.1803 (6)0.0683 (17)0.689 (5)
H110.2495680.9673900.1332190.082*0.689 (5)
C120.3599 (13)0.7700 (10)0.1570 (6)0.0570 (13)0.689 (5)
O10.6453 (5)0.6668 (4)0.3906 (3)0.0720 (9)0.689 (5)
C1B0.5012 (11)0.3867 (10)0.2090 (7)0.078 (2)0.311 (5)
H1C0.4789360.3230390.1502780.094*0.311 (5)
H1D0.4463150.3484230.2517800.094*0.311 (5)
C2B0.6645 (12)0.3715 (13)0.2644 (7)0.079 (2)0.311 (5)
H2C0.6963120.2701130.2572420.095*0.311 (5)
H2D0.7201140.4390260.2354090.095*0.311 (5)
N2B0.6939 (15)0.4062 (19)0.3706 (9)0.073 (3)0.311 (5)
C3B0.8539 (14)0.443 (2)0.4141 (14)0.105 (4)0.311 (5)
H3D0.9115780.3554530.4116640.158*0.311 (5)
H3E0.8728390.4738780.4822860.158*0.311 (5)
H3F0.8796710.5217940.3762680.158*0.311 (5)
C4B0.6546 (16)0.2889 (18)0.4287 (12)0.096 (3)0.311 (5)
H4D0.5497960.2762670.4075030.143*0.311 (5)
H4E0.6873370.3155290.4981720.143*0.311 (5)
H4F0.7006900.1970230.4189510.143*0.311 (5)
N1B0.306 (2)0.722 (2)0.0774 (13)0.068 (2)0.311 (5)
H1NB0.2486170.7629230.0244370.102*0.311 (5)
C5B0.3611 (15)0.5824 (19)0.0815 (11)0.065 (2)0.311 (5)
H5B0.3439520.5195230.0262880.078*0.311 (5)
C6B0.4454 (12)0.5433 (12)0.1756 (10)0.067 (2)0.311 (5)
C7B0.446 (2)0.6822 (18)0.2322 (11)0.055 (2)0.311 (5)
C8B0.4966 (13)0.7291 (15)0.3325 (9)0.056 (2)0.311 (5)
C9B0.4612 (18)0.8680 (16)0.3603 (12)0.058 (2)0.311 (5)
H9B0.4991460.8954790.4270870.070*0.311 (5)
C10B0.374 (3)0.968 (2)0.2955 (13)0.059 (2)0.311 (5)
H10B0.3574851.0639560.3165120.071*0.311 (5)
C11B0.312 (3)0.924 (2)0.2009 (13)0.059 (2)0.311 (5)
H11B0.2418890.9845530.1568080.071*0.311 (5)
C12B0.352 (3)0.788 (2)0.1687 (14)0.058 (2)0.311 (5)
O1B0.5739 (11)0.6420 (9)0.4069 (5)0.076 (2)0.311 (5)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.106 (3)0.067 (2)0.072 (2)0.004 (2)0.041 (2)0.0041 (17)
C20.105 (3)0.055 (2)0.081 (2)0.003 (2)0.033 (2)0.0001 (17)
N20.078 (3)0.059 (3)0.080 (2)0.0124 (19)0.0338 (19)0.0092 (18)
C30.072 (3)0.097 (4)0.134 (4)0.026 (3)0.039 (3)0.019 (4)
C40.104 (4)0.076 (3)0.094 (3)0.002 (3)0.045 (3)0.015 (2)
N10.084 (3)0.078 (4)0.050 (2)0.007 (2)0.0099 (18)0.004 (2)
C50.084 (3)0.072 (3)0.0559 (19)0.008 (2)0.028 (2)0.0104 (18)
C60.082 (3)0.0618 (19)0.0557 (17)0.0055 (19)0.028 (2)0.0054 (14)
C70.064 (3)0.0537 (18)0.0522 (19)0.0065 (17)0.0216 (17)0.0023 (15)
C80.064 (3)0.0563 (19)0.0525 (19)0.0007 (19)0.0193 (18)0.0034 (15)
C90.081 (3)0.060 (2)0.059 (3)0.001 (2)0.028 (2)0.0028 (18)
C100.078 (2)0.063 (3)0.072 (4)0.009 (2)0.032 (3)0.004 (3)
C110.069 (2)0.070 (3)0.066 (3)0.011 (2)0.020 (3)0.005 (2)
C120.059 (2)0.063 (3)0.049 (2)0.009 (2)0.0173 (19)0.0030 (19)
O10.083 (2)0.0611 (17)0.0585 (17)0.0045 (16)0.0007 (15)0.0042 (12)
C1B0.095 (4)0.066 (4)0.073 (4)0.004 (3)0.026 (3)0.012 (3)
C2B0.096 (4)0.071 (4)0.076 (4)0.010 (4)0.035 (3)0.004 (3)
N2B0.081 (5)0.065 (5)0.078 (4)0.009 (4)0.032 (4)0.001 (4)
C3B0.069 (6)0.113 (9)0.131 (8)0.016 (7)0.026 (6)0.003 (8)
C4B0.099 (7)0.086 (6)0.108 (7)0.012 (6)0.040 (6)0.023 (6)
N1B0.083 (4)0.064 (4)0.053 (4)0.001 (3)0.014 (3)0.002 (3)
C5B0.077 (4)0.068 (4)0.054 (3)0.006 (4)0.024 (3)0.012 (3)
C6B0.077 (4)0.063 (3)0.065 (3)0.001 (3)0.026 (3)0.008 (3)
C7B0.065 (4)0.053 (3)0.050 (3)0.000 (3)0.021 (3)0.001 (3)
C8B0.067 (4)0.054 (3)0.047 (3)0.000 (3)0.019 (3)0.001 (3)
C9B0.074 (4)0.054 (3)0.052 (4)0.000 (3)0.029 (3)0.001 (3)
C10B0.073 (4)0.053 (4)0.060 (4)0.009 (3)0.034 (4)0.007 (3)
C11B0.064 (4)0.061 (4)0.059 (5)0.011 (3)0.030 (4)0.001 (4)
C12B0.065 (4)0.061 (4)0.051 (4)0.006 (3)0.019 (3)0.000 (3)
O1B0.098 (5)0.066 (4)0.051 (3)0.014 (4)0.005 (3)0.002 (3)
Geometric parameters (Å, º) top
C1—C61.509 (6)C1B—C2B1.523 (12)
C1—C21.530 (6)C1B—H1C0.9700
C1—H1A0.9700C1B—H1D0.9700
C1—H1B0.9700C2B—N2B1.463 (13)
C2—N21.466 (7)C2B—H2C0.9700
C2—H2A0.9700C2B—H2D0.9700
C2—H2B0.9700N2B—C4B1.444 (14)
N2—C41.463 (7)N2B—C3B1.498 (14)
N2—C31.471 (7)N2B—H11.43 (5)
C3—H3A0.9600C3B—H3D0.9600
C3—H3B0.9600C3B—H3E0.9600
C3—H3C0.9600C3B—H3F0.9600
C4—H4A0.9600C4B—H4D0.9600
C4—H4B0.9600C4B—H4E0.9600
C4—H4C0.9600C4B—H4F0.9600
N1—C51.350 (7)N1B—C5B1.347 (13)
N1—C121.370 (6)N1B—C12B1.359 (13)
N1—H1N0.8600N1B—H1NB0.8600
C5—C61.337 (7)C5B—C6B1.368 (13)
C5—H50.9300C5B—H5B0.9300
C6—C71.449 (6)C6B—C7B1.472 (12)
C7—C81.403 (6)C7B—C8B1.407 (12)
C7—C121.404 (6)C7B—C12B1.416 (13)
C8—O11.364 (5)C8B—O1B1.333 (11)
C8—C91.379 (7)C8B—C9B1.374 (12)
C9—C101.408 (7)C9B—C10B1.369 (13)
C9—H90.9300C9B—H9B0.9300
C10—C111.358 (7)C10B—C11B1.340 (13)
C10—H100.9300C10B—H10B0.9300
C11—C121.380 (7)C11B—C12B1.397 (13)
C11—H110.9300C11B—H11B0.9300
O1—H11.08 (5)O1B—H11.12 (5)
C1B—C6B1.521 (12)
C6—C1—C2114.9 (4)C2B—C1B—H1C108.1
C6—C1—H1A108.5C6B—C1B—H1D108.1
C2—C1—H1A108.5C2B—C1B—H1D108.1
C6—C1—H1B108.5H1C—C1B—H1D107.3
C2—C1—H1B108.5N2B—C2B—C1B110.8 (9)
H1A—C1—H1B107.5N2B—C2B—H2C109.5
N2—C2—C1113.5 (4)C1B—C2B—H2C109.5
N2—C2—H2A108.9N2B—C2B—H2D109.5
C1—C2—H2A108.9C1B—C2B—H2D109.5
N2—C2—H2B108.9H2C—C2B—H2D108.1
C1—C2—H2B108.9C4B—N2B—C2B114.7 (13)
H2A—C2—H2B107.7C4B—N2B—C3B109.4 (12)
C4—N2—C2110.0 (5)C2B—N2B—C3B108.7 (12)
C4—N2—C3109.9 (5)C4B—N2B—H1114 (2)
C2—N2—C3113.9 (6)C2B—N2B—H1108.3 (19)
N2—C3—H3A109.5C3B—N2B—H1101 (2)
N2—C3—H3B109.5N2B—C3B—H3D109.5
H3A—C3—H3B109.5N2B—C3B—H3E109.5
N2—C3—H3C109.5H3D—C3B—H3E109.5
H3A—C3—H3C109.5N2B—C3B—H3F109.5
H3B—C3—H3C109.5H3D—C3B—H3F109.5
N2—C4—H4A109.5H3E—C3B—H3F109.5
N2—C4—H4B109.5N2B—C4B—H4D109.5
H4A—C4—H4B109.5N2B—C4B—H4E109.5
N2—C4—H4C109.5H4D—C4B—H4E109.5
H4A—C4—H4C109.5N2B—C4B—H4F109.5
H4B—C4—H4C109.5H4D—C4B—H4F109.5
C5—N1—C12109.1 (6)H4E—C4B—H4F109.5
C5—N1—H1N125.4C5B—N1B—C12B110.4 (12)
C12—N1—H1N125.4C5B—N1B—H1NB124.8
C6—C5—N1110.7 (5)C12B—N1B—H1NB124.8
C6—C5—H5124.7N1B—C5B—C6B112.7 (12)
N1—C5—H5124.7N1B—C5B—H5B123.6
C5—C6—C7107.0 (5)C6B—C5B—H5B123.6
C5—C6—C1121.4 (5)C5B—C6B—C7B102.2 (10)
C7—C6—C1131.3 (5)C5B—C6B—C1B125.6 (11)
C8—C7—C12119.4 (5)C7B—C6B—C1B131.7 (10)
C8—C7—C6134.9 (5)C8B—C7B—C12B113.1 (11)
C12—C7—C6105.5 (4)C8B—C7B—C6B137.3 (12)
O1—C8—C9118.9 (5)C12B—C7B—C6B108.8 (10)
O1—C8—C7122.9 (5)O1B—C8B—C9B115.5 (10)
C9—C8—C7118.2 (5)O1B—C8B—C7B123.5 (11)
C8—C9—C10120.1 (6)C9B—C8B—C7B120.9 (10)
C8—C9—H9119.9C10B—C9B—C8B123.9 (12)
C10—C9—H9119.9C10B—C9B—H9B118.1
C11—C10—C9122.8 (7)C8B—C9B—H9B118.1
C11—C10—H10118.6C11B—C10B—C9B117.7 (14)
C9—C10—H10118.6C11B—C10B—H10B121.2
C10—C11—C12116.7 (6)C9B—C10B—H10B121.2
C10—C11—H11121.6C10B—C11B—C12B119.6 (14)
C12—C11—H11121.6C10B—C11B—H11B120.2
N1—C12—C11129.5 (6)C12B—C11B—H11B120.2
N1—C12—C7107.7 (5)N1B—C12B—C11B129.8 (13)
C11—C12—C7122.6 (6)N1B—C12B—C7B105.7 (11)
C8—O1—H1109 (2)C11B—C12B—C7B124.4 (13)
C6B—C1B—C2B116.7 (8)C8B—O1B—H1111 (2)
C6B—C1B—H1C108.1
C6—C1—C2—N284.6 (6)C6B—C1B—C2B—N2B83.2 (13)
C1—C2—N2—C4160.7 (5)C1B—C2B—N2B—C4B76.8 (14)
C1—C2—N2—C375.4 (6)C1B—C2B—N2B—C3B160.4 (12)
C12—N1—C5—C61.3 (8)C12B—N1B—C5B—C6B1.6 (15)
N1—C5—C6—C71.9 (7)N1B—C5B—C6B—C7B3.9 (10)
N1—C5—C6—C1172.9 (5)N1B—C5B—C6B—C1B168.7 (12)
C2—C1—C6—C5117.6 (6)C2B—C1B—C6B—C5B130.1 (10)
C2—C1—C6—C769.1 (8)C2B—C1B—C6B—C7B59.5 (17)
C5—C6—C7—C8177.2 (8)C5B—C6B—C7B—C8B173 (2)
C1—C6—C7—C83.3 (13)C1B—C6B—C7B—C8B1 (3)
C5—C6—C7—C121.6 (9)C5B—C6B—C7B—C12B4.8 (19)
C1—C6—C7—C12172.3 (7)C1B—C6B—C7B—C12B167.2 (18)
C12—C7—C8—O1177.9 (8)C12B—C7B—C8B—O1B173.0 (19)
C6—C7—C8—O12.8 (12)C6B—C7B—C8B—O1B5 (3)
C12—C7—C8—C90.4 (11)C12B—C7B—C8B—C9B3 (3)
C6—C7—C8—C9174.7 (8)C6B—C7B—C8B—C9B171.8 (19)
O1—C8—C9—C10178.6 (7)O1B—C8B—C9B—C10B175.0 (17)
C7—C8—C9—C101.1 (10)C7B—C8B—C9B—C10B2 (2)
C8—C9—C10—C113.6 (14)C8B—C9B—C10B—C11B4 (3)
C9—C10—C11—C125.1 (16)C9B—C10B—C11B—C12B8 (3)
C5—N1—C12—C11174.9 (11)C5B—N1B—C12B—C11B173 (3)
C5—N1—C12—C70.2 (10)C5B—N1B—C12B—C7B2 (2)
C10—C11—C12—N1178.3 (12)C10B—C11B—C12B—N1B180 (3)
C10—C11—C12—C74.4 (16)C10B—C11B—C12B—C7B6 (4)
C8—C7—C12—N1177.3 (8)C8B—C7B—C12B—N1B175.7 (18)
C6—C7—C12—N10.8 (10)C6B—C7B—C12B—N1B4 (3)
C8—C7—C12—C112.2 (15)C8B—C7B—C12B—C11B0 (4)
C6—C7—C12—C11174.3 (10)C6B—C7B—C12B—C11B171 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.861.992.823 (8)164
N1B—H1NB···O1Bi0.862.142.984 (18)169
O1—H1···N21.08 (5)1.54 (5)2.584 (8)161 (4)
O1B—H1···N2B1.12 (5)1.43 (5)2.52 (2)162 (4)
Symmetry code: (i) x1/2, y+3/2, z1/2.
(Form_I_150K) top
Crystal data top
C12H16N2OF(000) = 440
Mr = 204.27Dx = 1.233 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.4041 (4) ÅCell parameters from 9931 reflections
b = 8.5286 (3) Åθ = 3.1–33.1°
c = 12.4087 (4) ŵ = 0.08 mm1
β = 92.5663 (19)°T = 150 K
V = 1099.95 (7) Å3Plate, colourless
Z = 40.43 × 0.29 × 0.06 mm
Data collection top
Bruker AXS D8 Quest
diffractometer
4199 independent reflections
Radiation source: fine focus sealed tube X-ray source3116 reflections with I > 2σ(I)
Triumph curved graphite crystal monochromatorRint = 0.051
Detector resolution: 7.4074 pixels mm-1θmax = 33.2°, θmin = 2.9°
ω and phi scansh = 1616
Absorption correction: multi-scan
(SADABS 2016/2; Krause et al., 2015)
k = 1313
Tmin = 0.663, Tmax = 0.747l = 1918
33575 measured reflections
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: mixed
wR(F2) = 0.138H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0713P)2 + 0.1621P]
where P = (Fo2 + 2Fc2)/3
4199 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = 0.24 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. The atom naming scheme was adopted from an earlier determination of this structure (T. J. Petcher, H. P. Weber, J. C. S. Perkin Trans. 2, 1974, 946-948, https://doi.org/10.1039/P29740000946).

Positions and isotropic displacement parameters of acidic H atoms (O-H and N-H) were freely refined.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.70597 (7)0.47588 (8)0.47509 (5)0.03151 (16)
H1O0.7335 (17)0.592 (2)0.4841 (14)0.071 (5)*
N10.64472 (10)0.13425 (11)0.18670 (7)0.0385 (2)
H1N0.6505 (15)0.0898 (19)0.1202 (13)0.056 (4)*
N20.24988 (8)0.22499 (9)0.49394 (6)0.02849 (16)
C10.47558 (9)0.23991 (11)0.43345 (7)0.02952 (18)
H1A0.4728770.3519030.4542140.035*
H1B0.5132770.1805680.4957330.035*
C50.54133 (11)0.12554 (12)0.25174 (8)0.0350 (2)
H50.4672920.0622480.2378560.042*
C60.56084 (9)0.22194 (10)0.33987 (7)0.02783 (18)
C70.68352 (9)0.29695 (10)0.32686 (7)0.02674 (18)
C80.75460 (9)0.41272 (10)0.38446 (7)0.02762 (18)
C90.87124 (10)0.46122 (13)0.34568 (9)0.0357 (2)
H90.9208180.5378420.3844680.043*
C100.91725 (11)0.39842 (14)0.24952 (9)0.0415 (3)
H100.9973890.4339330.2249680.050*
C110.84970 (11)0.28788 (14)0.19068 (9)0.0403 (3)
H110.8811220.2462870.1259000.048*
C120.73231 (10)0.23859 (11)0.22993 (7)0.0324 (2)
C20.33887 (9)0.18255 (12)0.40912 (8)0.0326 (2)
H2A0.3065390.2278580.3396290.039*
H2B0.3399160.0670700.4010860.039*
C30.11742 (11)0.18671 (17)0.45855 (11)0.0477 (3)
H3A0.0955060.2406630.3904630.072*
H3B0.0586650.2206430.5135440.072*
H3C0.1094440.0731910.4479730.072*
C40.28086 (12)0.14338 (14)0.59591 (9)0.0417 (2)
H4A0.2744080.0298880.5845360.063*
H4B0.2202210.1755930.6499120.063*
H4C0.3686480.1701380.6213910.063*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0440 (4)0.0254 (3)0.0263 (3)0.0044 (3)0.0143 (3)0.0015 (2)
N10.0508 (5)0.0386 (5)0.0265 (4)0.0103 (4)0.0070 (3)0.0076 (3)
N20.0294 (4)0.0283 (4)0.0280 (3)0.0019 (3)0.0039 (3)0.0006 (3)
C10.0325 (4)0.0296 (4)0.0269 (4)0.0009 (3)0.0058 (3)0.0038 (3)
C50.0437 (5)0.0319 (5)0.0295 (4)0.0051 (4)0.0025 (4)0.0067 (4)
C60.0345 (4)0.0245 (4)0.0249 (4)0.0047 (3)0.0052 (3)0.0014 (3)
C70.0340 (4)0.0244 (4)0.0224 (3)0.0081 (3)0.0079 (3)0.0028 (3)
C80.0343 (4)0.0249 (4)0.0244 (4)0.0049 (3)0.0093 (3)0.0043 (3)
C90.0355 (5)0.0361 (5)0.0364 (5)0.0024 (4)0.0119 (4)0.0043 (4)
C100.0373 (5)0.0480 (6)0.0408 (5)0.0100 (4)0.0186 (4)0.0091 (4)
C110.0448 (6)0.0457 (6)0.0318 (5)0.0170 (5)0.0174 (4)0.0041 (4)
C120.0422 (5)0.0304 (4)0.0251 (4)0.0125 (4)0.0094 (3)0.0015 (3)
C20.0334 (4)0.0346 (5)0.0301 (4)0.0006 (4)0.0033 (3)0.0078 (4)
C30.0306 (5)0.0634 (8)0.0492 (6)0.0026 (5)0.0012 (4)0.0151 (6)
C40.0452 (6)0.0420 (6)0.0383 (5)0.0024 (5)0.0067 (4)0.0142 (4)
Geometric parameters (Å, º) top
O1—C81.3645 (10)C7—C121.4165 (12)
O1—H1O1.038 (19)C8—C91.3884 (13)
N1—C121.3662 (15)C9—C101.4110 (15)
N1—C51.3755 (14)C9—H90.9500
N1—H1N0.913 (16)C10—C111.3674 (18)
N2—C31.4644 (14)C10—H100.9500
N2—C41.4672 (13)C11—C121.3995 (15)
N2—C21.4776 (12)C11—H110.9500
C1—C61.5004 (12)C2—H2A0.9900
C1—C21.5215 (14)C2—H2B0.9900
C1—H1A0.9900C3—H3A0.9800
C1—H1B0.9900C3—H3B0.9800
C5—C61.3759 (13)C3—H3C0.9800
C5—H50.9500C4—H4A0.9800
C6—C71.4432 (13)C4—H4B0.9800
C7—C81.4090 (13)C4—H4C0.9800
C8—O1—H1O110.8 (10)C11—C10—C9121.84 (10)
C12—N1—C5109.28 (8)C11—C10—H10119.1
C12—N1—H1N123.8 (10)C9—C10—H10119.1
C5—N1—H1N126.4 (10)C10—C11—C12117.19 (9)
C3—N2—C4108.68 (9)C10—C11—H11121.4
C3—N2—C2110.07 (8)C12—C11—H11121.4
C4—N2—C2112.18 (8)N1—C12—C11129.50 (9)
C6—C1—C2113.17 (8)N1—C12—C7107.71 (9)
C6—C1—H1A108.9C11—C12—C7122.78 (10)
C2—C1—H1A108.9N2—C2—C1112.95 (8)
C6—C1—H1B108.9N2—C2—H2A109.0
C2—C1—H1B108.9C1—C2—H2A109.0
H1A—C1—H1B107.8N2—C2—H2B109.0
N1—C5—C6110.04 (10)C1—C2—H2B109.0
N1—C5—H5125.0H2A—C2—H2B107.8
C6—C5—H5125.0N2—C3—H3A109.5
C5—C6—C7106.01 (8)N2—C3—H3B109.5
C5—C6—C1127.22 (9)H3A—C3—H3B109.5
C7—C6—C1126.71 (8)N2—C3—H3C109.5
C8—C7—C12118.49 (8)H3A—C3—H3C109.5
C8—C7—C6134.47 (8)H3B—C3—H3C109.5
C12—C7—C6106.95 (8)N2—C4—H4A109.5
O1—C8—C9122.01 (9)N2—C4—H4B109.5
O1—C8—C7119.29 (8)H4A—C4—H4B109.5
C9—C8—C7118.69 (8)N2—C4—H4C109.5
C8—C9—C10120.99 (11)H4A—C4—H4C109.5
C8—C9—H9119.5H4B—C4—H4C109.5
C10—C9—H9119.5
C12—N1—C5—C61.19 (12)C7—C8—C9—C101.12 (15)
N1—C5—C6—C71.10 (11)C8—C9—C10—C110.03 (17)
N1—C5—C6—C1176.13 (9)C9—C10—C11—C120.17 (17)
C2—C1—C6—C519.25 (14)C5—N1—C12—C11178.23 (10)
C2—C1—C6—C7164.07 (9)C5—N1—C12—C70.76 (11)
C5—C6—C7—C8175.89 (10)C10—C11—C12—N1178.11 (10)
C1—C6—C7—C86.86 (16)C10—C11—C12—C70.75 (16)
C5—C6—C7—C120.61 (10)C8—C7—C12—N1177.24 (8)
C1—C6—C7—C12176.64 (8)C6—C7—C12—N10.08 (10)
C12—C7—C8—O1176.77 (8)C8—C7—C12—C111.83 (14)
C6—C7—C8—O10.57 (15)C6—C7—C12—C11178.99 (9)
C12—C7—C8—C91.96 (13)C3—N2—C2—C1171.85 (9)
C6—C7—C8—C9178.15 (10)C4—N2—C2—C167.00 (11)
O1—C8—C9—C10177.57 (9)C6—C1—C2—N2170.10 (8)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1—H1O···N2i1.038 (19)1.590 (19)2.6175 (10)169.5 (16)
N1—H1N···O1ii0.913 (16)1.995 (17)2.8867 (11)165.0 (15)
Symmetry codes: (i) x+1, y+1, z+1; (ii) x, y+1/2, z1/2.
(Form_I_300K) top
Crystal data top
C12H16N2OF(000) = 440
Mr = 204.27Dx = 1.202 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.6228 (5) ÅCell parameters from 7001 reflections
b = 8.4984 (4) Åθ = 3.1–30.2°
c = 12.5073 (5) ŵ = 0.08 mm1
β = 90.807 (2)°T = 300 K
V = 1129.01 (9) Å3Plate, colourless
Z = 40.43 × 0.29 × 0.06 mm
Data collection top
Bruker AXS D8 Quest
diffractometer
4323 independent reflections
Radiation source: fine focus sealed tube X-ray source2421 reflections with I > 2σ(I)
Triumph curved graphite crystal monochromatorRint = 0.066
Detector resolution: 7.4074 pixels mm-1θmax = 33.2°, θmin = 2.9°
ω and phi scansh = 1616
Absorption correction: multi-scan
(SADABS 2016/2; Krause et al., 2015)
k = 1313
Tmin = 0.663, Tmax = 0.747l = 1918
34680 measured reflections
Refinement top
Refinement on F2Primary atom site location: isomorphous structure methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: mixed
wR(F2) = 0.172H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0782P)2 + 0.1036P]
where P = (Fo2 + 2Fc2)/3
4323 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = 0.19 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. The structure was solved from its 150 K analogue by isomorphous replacement. The atom naming scheme was adopted from an earlier determination of this structure (T. J. Petcher, H. P. Weber, J. C. S. Perkin Trans. 2, 1974, 946-948, https://doi.org/10.1039/P29740000946).

Positions and isotropic displacement parameters of acidic H atoms (O-H and N-H) were freely refined.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.69993 (9)0.47438 (10)0.46870 (6)0.0560 (2)
H1O0.7313 (19)0.588 (3)0.4810 (15)0.103 (6)*
N10.64455 (13)0.13744 (16)0.18151 (10)0.0705 (4)
H1N0.6508 (18)0.095 (2)0.1144 (16)0.093 (6)*
N20.25313 (10)0.22804 (13)0.49141 (9)0.0552 (3)
C10.47404 (11)0.24181 (16)0.42811 (10)0.0541 (3)
H1A0.4735330.3512540.4501110.065*
H1B0.5071160.1801510.4874130.065*
C50.54246 (14)0.12965 (17)0.24671 (11)0.0639 (4)
H50.4711560.0688800.2333300.077*
C60.55999 (12)0.22397 (14)0.33453 (9)0.0502 (3)
C70.68108 (11)0.29721 (13)0.32125 (8)0.0464 (3)
C80.75013 (11)0.41104 (14)0.37825 (9)0.0483 (3)
C90.86570 (13)0.45722 (18)0.33999 (12)0.0636 (3)
H90.9131170.5310820.3778310.076*
C100.91262 (14)0.3942 (2)0.24471 (13)0.0739 (4)
H100.9909000.4272320.2210630.089*
C110.84729 (15)0.2863 (2)0.18597 (12)0.0709 (4)
H110.8790460.2456100.1228220.085*
C120.73034 (13)0.23927 (16)0.22452 (10)0.0567 (3)
C20.34100 (13)0.19072 (18)0.40446 (11)0.0620 (3)
H2A0.3118210.2417900.3393300.074*
H2B0.3400350.0780530.3920460.074*
C30.12307 (15)0.2040 (3)0.45468 (18)0.1042 (7)
H3A0.1053290.2721510.3951380.156*
H3B0.0666780.2276210.5117970.156*
H3C0.1119400.0964680.4330200.156*
C40.27790 (19)0.1351 (2)0.58787 (15)0.0928 (6)
H4A0.2636110.0257630.5726810.139*
H4B0.2226110.1685330.6435150.139*
H4C0.3637260.1499900.6107120.139*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0711 (6)0.0524 (5)0.0450 (4)0.0088 (4)0.0212 (4)0.0048 (3)
N10.0868 (9)0.0741 (8)0.0509 (6)0.0118 (6)0.0123 (6)0.0191 (6)
N20.0498 (5)0.0578 (6)0.0582 (6)0.0052 (4)0.0087 (4)0.0046 (5)
C10.0550 (7)0.0573 (7)0.0502 (6)0.0007 (5)0.0100 (5)0.0069 (5)
C50.0720 (8)0.0631 (8)0.0568 (7)0.0026 (6)0.0053 (6)0.0161 (6)
C60.0567 (6)0.0473 (6)0.0467 (6)0.0075 (5)0.0080 (5)0.0035 (5)
C70.0546 (6)0.0456 (5)0.0393 (5)0.0132 (5)0.0115 (4)0.0027 (4)
C80.0538 (6)0.0504 (6)0.0412 (5)0.0077 (5)0.0128 (4)0.0061 (4)
C90.0558 (7)0.0719 (8)0.0635 (8)0.0007 (6)0.0169 (6)0.0038 (6)
C100.0583 (8)0.0934 (11)0.0709 (9)0.0135 (7)0.0281 (7)0.0103 (8)
C110.0722 (9)0.0856 (10)0.0557 (7)0.0240 (8)0.0278 (6)0.0008 (7)
C120.0669 (7)0.0587 (7)0.0449 (6)0.0190 (6)0.0142 (5)0.0003 (5)
C20.0589 (7)0.0664 (8)0.0609 (7)0.0042 (6)0.0082 (6)0.0170 (6)
C30.0523 (8)0.1488 (19)0.1117 (15)0.0096 (10)0.0041 (9)0.0549 (14)
C40.0979 (13)0.0873 (12)0.0940 (12)0.0032 (10)0.0288 (10)0.0360 (10)
Geometric parameters (Å, º) top
O1—C81.3678 (13)C7—C121.4135 (15)
O1—H1O1.03 (2)C8—C91.3809 (17)
N1—C121.362 (2)C9—C101.405 (2)
N1—C51.3676 (19)C9—H90.9300
N1—H1N0.92 (2)C10—C111.359 (2)
N2—C41.463 (2)C10—H100.9300
N2—C31.4640 (19)C11—C121.397 (2)
N2—C21.4776 (16)C11—H110.9300
C1—C61.5022 (15)C2—H2A0.9700
C1—C21.5038 (18)C2—H2B0.9700
C1—H1A0.9700C3—H3A0.9600
C1—H1B0.9700C3—H3B0.9600
C5—C61.3703 (17)C3—H3C0.9600
C5—H50.9300C4—H4A0.9600
C6—C71.4407 (17)C4—H4B0.9600
C7—C81.4026 (18)C4—H4C0.9600
C8—O1—H1O111.3 (11)C11—C10—C9122.10 (13)
C12—N1—C5109.09 (11)C11—C10—H10118.9
C12—N1—H1N123.6 (12)C9—C10—H10118.9
C5—N1—H1N126.6 (12)C10—C11—C12117.14 (12)
C4—N2—C3109.96 (15)C10—C11—H11121.4
C4—N2—C2112.52 (12)C12—C11—H11121.4
C3—N2—C2110.01 (12)N1—C12—C11129.70 (13)
C6—C1—C2113.42 (11)N1—C12—C7107.80 (12)
C6—C1—H1A108.9C11—C12—C7122.50 (14)
C2—C1—H1A108.9N2—C2—C1113.26 (11)
C6—C1—H1B108.9N2—C2—H2A108.9
C2—C1—H1B108.9C1—C2—H2A108.9
H1A—C1—H1B107.7N2—C2—H2B108.9
N1—C5—C6110.47 (13)C1—C2—H2B108.9
N1—C5—H5124.8H2A—C2—H2B107.7
C6—C5—H5124.8N2—C3—H3A109.5
C5—C6—C7105.78 (11)N2—C3—H3B109.5
C5—C6—C1127.32 (12)H3A—C3—H3B109.5
C7—C6—C1126.84 (11)N2—C3—H3C109.5
C8—C7—C12118.56 (11)H3A—C3—H3C109.5
C8—C7—C6134.49 (10)H3B—C3—H3C109.5
C12—C7—C6106.86 (11)N2—C4—H4A109.5
O1—C8—C9122.25 (12)N2—C4—H4B109.5
O1—C8—C7118.99 (10)H4A—C4—H4B109.5
C9—C8—C7118.75 (11)N2—C4—H4C109.5
C8—C9—C10120.89 (15)H4A—C4—H4C109.5
C8—C9—H9119.6H4B—C4—H4C109.5
C10—C9—H9119.6
C12—N1—C5—C60.99 (17)C7—C8—C9—C101.3 (2)
N1—C5—C6—C71.03 (15)C8—C9—C10—C110.2 (2)
N1—C5—C6—C1176.28 (12)C9—C10—C11—C120.3 (2)
C2—C1—C6—C520.34 (19)C5—N1—C12—C11179.00 (15)
C2—C1—C6—C7162.90 (12)C5—N1—C12—C70.52 (15)
C5—C6—C7—C8175.62 (13)C10—C11—C12—N1178.25 (14)
C1—C6—C7—C87.1 (2)C10—C11—C12—C71.2 (2)
C5—C6—C7—C120.69 (13)C8—C7—C12—N1176.89 (11)
C1—C6—C7—C12176.64 (11)C6—C7—C12—N10.12 (14)
C12—C7—C8—O1176.31 (10)C8—C7—C12—C112.67 (19)
C6—C7—C8—O10.3 (2)C6—C7—C12—C11179.68 (12)
C12—C7—C8—C92.62 (17)C4—N2—C2—C168.20 (16)
C6—C7—C8—C9178.60 (13)C3—N2—C2—C1168.82 (15)
O1—C8—C9—C10177.63 (12)C6—C1—C2—N2172.27 (11)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1—H1O···N2i1.03 (2)1.61 (2)2.6242 (14)166.6 (18)
N1—H1N···O1ii0.92 (2)1.99 (2)2.8944 (14)167.9 (18)
Symmetry codes: (i) x+1, y+1, z+1; (ii) x, y+1/2, z1/2.
The unit-cell parameters of Form I as a function of temperature. Axes in [Å], angle in [°], volume in [Å3]. Alpha and gamma angles are 90° (monoclinic crystal system). Estimated standard deviations are given below each value. top
a-axisb-axisc-axisbetaVolume
15010.40558.524712.417092.61221100.296
0.00040.00030.00040.00190.093
17010.45068.521912.428992.32371106.001
0.00100.00070.00110.00290.278
19010.48638.514512.441792.07071110.171
0.00110.00070.00120.00310.293
21010.51858.507212.451691.78171113.659
0.00100.00060.00110.00280.262
23010.54628.500912.463491.50681116.985
0.00110.00080.00130.00320.318
25010.57288.497512.479091.30721120.845
0.00110.00080.00130.00310.315
27010.58978.493512.488691.06581123.084
0.00090.00060.00100.00260.243
29010.61378.493712.499490.93111126.671
0.00120.00080.00140.00330.337
30010.62088.494312.506690.83661128.181
0.00050.00040.00050.00240.104
Relative changes of unit cell parameter as a function of temperature. Values relative to the 150 K number. top
a-axisb-axisc-axisVolume
1501.001.001.001.00
1701.00430.99971.00101.0052
1901.00780.99881.00201.0090
2101.01090.99791.00281.0121
2301.01350.99721.00371.0152
2501.01610.99681.00501.0187
2701.01770.99631.00581.0207
2901.02000.99641.00661.0240
3001.02070.99641.00721.0253

Footnotes

Current affiliation: Improved Pharma LLC, West Lafayette, IN 47906, USA.

Acknowledgements

NS thanks Curia, West Lafayette, USA for the single-crystal data collection of Form II. This material is based upon work supported by the National Science Foundation through the Major Research Instrumentation Program under Grant No. CHE 1625543 (funding for the single-crystal X-ray diffractometer).

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